AMCG00018284 (arhgdib,LOC108432841,LOC107590585,LOC107685923,LOC107568023,LOC106601960)


Basic Information

Item Value
gene id AMCG00018284
gene name arhgdib,LOC108432841,LOC107590585,LOC107685923,LOC107568023,LOC106601960
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6653889 ~ 6675207 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018284
ACTGCTCTGATTCAGAGACAATGTTGGGAGTGGATGTATGTGAGTTTGGTGGGCAGTTTCTTGAGCTGCTGTGGCTCACGGTGTGCTATAGAGACATCATGGCtgacaaagagacagagaagcATGttggggaggaggaagaggaaacCGATCTGAACTACCAGCCGCCGGCCCAGAAATCTCTGCAGGAGATCCAGGAGCTGGACAAGGATGATGAGAGCCTGAACAAGTACAAGCAGGCTCTGCTGGGGGCGGGGCCTGTAGTGGCAGATCCTACTATCCCCAACGTTCAAGTCACAAGGCTAACTCTCGTCTGTGAGCAGGCTCCTGGACCAATCACGATGGATCTGCAAGgtgACTTAGAGGCCCTGAAGAAGGAGAACTTTGTGCTGAAGGAAGGAGTCGACTACAGAGTCAAAATCCATTTCAAGGTCAACCGGGATATTGTATCTGGATTAAAGTATGTGCACCATACTTACAGGAAAGGGCTAAGAGTGGACAAGGCCGTCTACATGGTGGGCAGCTATGGGCCACGCGTCGAGGAACATGAGTTCATGACCCCTGTGGAAGAGGCGCCCAAAGGCATGCTCGTCCGCGGTGGCTACCACATCAAGTCCTACTTCACAGACGACGACAAGACGGACCACCTGTCCTGGGAGTGGAACCTGCAGATCAAGAAGGAGTGGAACGAGTAGAAGCCCAGGCGCTGCCCCGGAGCCGCCTTGCAGAAACAGATTGCAAAAGTTGTACAAACAGGAAGTTAGGCAAAGCTTAGCAGTCGGAGAAACCCTGAAAACAGCTCTTAACTGATAGAAACTACTTTACTGAGACGAAGGAAGGCAACTCACTCACTAACAGATCGGAGAGAGAGCAGACTCGCACTTCACAAGCCATGTCTTTAAGAGAAAATATCTcgtataaataatgcattttcacgCTATAGTTTTAAGTGTTTCGATCTAGTGCAAGTTTGGATGTGATgattacatacatgtacatactGAAATTTAAATGGCTAAGTAGTATACATGAATAAAGTCCTGCCTGTGTTCTGAAATAGTCTAGCAAAAACTACTGGGTAGAGAACACCAAAACAGCAGAGATGAGTCTTAGGATCTCATGAGCGAATATCTTAGTGTAAACTGAAGTGTGTAAATGGAGGTTTAGTCTTGCTACGTTGATAACTCATTTTAAGTTCAGAATAAATGTCTCTGCCAGTGATGAAGCCTCCCCTATGATTGCATTTGTCTTGGTGGAAGGCCTGTTGTCTGTATATTATGTACCAAGTTTCTGCCTGAAAAGTCTCTGATTTTCTGTTTACGCAACTTTCATGCGTCTGCTTTTGGTATATGTAACGGGAGATTTTGCTCAGTGTAATGATgggttgttattgttttatctgaaaaaaGGACTAATTGatgagattaataaaaaaaaaagcaccacaCATACCTGAAGTACAGTGTCTTTATACCTGTTCTGTAgggacttatttttttaacccagTATACAAAGCATTACTGACCTGTTTATGCTAATGATTGATTAGTAAATTGccaaaattaaatgcagagtttttttttttgtttgttttttttttaccaatgtgtaattaaacaaaCCTCTAAAGTATAAATAAGAATCCTAAGATCATTAGATTACACTGGAAGTGTAATATTgctttaaattagtattttccattatttagaTAATCCAATAATGACTGTCCTTTGGCATGCAattgtaatgtttcattttttatatattgacttATTCTTGCGATACTAAAATAAATCGGAAGGAATAAAGAATCTGCGATTATTCATGTATTATGTGAAAGTGTAAATCTTGCAGACACAACACAAGGACTGATATTGATTAAAGGTTTAGGCTGCTCTAAATAGGAGCATTTCGTTTTGGGGAAGTTGTTGACACTGGCATGTAAAGTTATATATAGGAGCCcaacaatatacatttgtaattctCACTAGGCCTTTATTGAAGTGACCcaatgattttaaatgcattaagcAGTGGAGATTCAATACTTTGAAGAAGTGTGCTGTATGGTGACAAGCAGTGAATATTAATGTTTCTGATGTATTTGAATGAATTGCAGTGTTCATTGCAGTTGCTATAAAAGTACTTTATAATTATCCTCAGCAGACAGGTTTCAAAATCAGTAATAATGAGGGGGGTGGAGGAATTGCCAAATGTTAATCTCCATCTGAAAAGATAGCTTAATGTCACTTTGGGCCTGAGAATGAAGTGTAGCCTTTAAGCACAGCTGCGCTTTTCTGTGTGACTCGGTCATTAAAAGTATCTCGCAAGGAGTTCTTAGTACATGTGTAtctttaaaactaaatctaatatccacattgtaaaatatgttaatgtacattttaatgtcatCGGATCAAAAACGGATCTTGAAGCGTAGAGTGTCAGTGCTGTCTTCCTGTTGCATGACTGTCTGAAagatatttcctttttaacattGATTGCATTTCTCCAAAGTGTTAAATGAAATGGAACAAGAAAAAGTGTGCTTAAGACTGCAacataatttctgtattttatacaaataaagtgCTTATTGTTCTGTGCCTCTGTGTTGCATCGGCAACAAATCCGTGGTGTGGATTTGCTGTATCTTAAAATCGTAGTTTGTCAGACATTTTCAAGCATCTTGTATCTTTTAATAAAGTAAAGATTTaaccattattttgtttttaagtactATGGAAGTCATGAATAAATCCACCAGATGAACATGCCCAaccaaaggatttttttttttttaaacttttaaaatgccATCAGAAGCTGTAAATCAGTCTGACCtcttttttctggtttgtttattttgcagttaaACGGTGTGTTATTATAAAGGGGTTGCGgtaatacttgtttgttttggtttttaatgaACTTGTTAAGAACTGGTG

Function

symbol description
arhgdib Enables GTPase activity; Rho GDP-dissociation inhibitor activity; and small GTPase binding activity. Involved in negative regulation of trophoblast cell migration; regulation of Rho protein signal transduction; and regulation of actin cytoskeleton reorganization. Located in cytosol.

NR:

description
rho GDP-dissociation inhibitor 2 isoform X1

GO:

id name namespace
GO:0050790 regulation of catalytic activity biological_process
GO:0005737 cytoplasm cellular_component
GO:0005094 Rho GDP-dissociation inhibitor activity molecular_function

KEGG:

id description
K12462 ARHGDI, RHOGDI; Rho GDP-dissociation inhibitor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018284 True 2951 mRNA 0.39 6 6653889 6675207

Neighbor

gene id symbol gene type direction distance location
AMCG00018283 c2h16orf72,zgc:77849,LOC105900007,LOC107590581,LOC107738628,LOC107685917 coding downstream 60787 6584976 ~ 6593102 (-)
AMCG00018293 grin2a,LOC107685916,LOC107690256,LOC107568390 coding downstream 189032 6309369 ~ 6464857 (-)
AMCG00018286 NA coding downstream 422882 6219973 ~ 6231007 (-)
AMCG00018292 nubp1,LOC107690260,LOC107590599 coding downstream 471077 6158280 ~ 6182812 (-)
AMCG00018289 NA coding downstream 498098 6128713 ~ 6155791 (-)
AMCG00018287 NA coding upstream 41677 6716884 ~ 6729381 (-)
AMCG00018288 clcn7,LOC106594444 coding upstream 62378 6737585 ~ 6754642 (-)
AMCG00018285 NA coding upstream 84777 6759984 ~ 6764079 (-)
AMCG00018290 NA coding upstream 101130 6776337 ~ 6777438 (-)
AMCG00018298 NA coding upstream 105564 6780771 ~ 6783583 (-)
G115395 NA non-coding downstream 434673 6217528 ~ 6219216 (-)
G115332 LOC100136012 non-coding downstream 607271 6046030 ~ 6046618 (-)
G115279 NA non-coding downstream 899867 5750092 ~ 5754022 (-)
G115278 NA non-coding downstream 903846 5749783 ~ 5750043 (-)
G115277 NA non-coding downstream 905530 5747458 ~ 5748359 (-)
G115534 NA non-coding upstream 326595 7001802 ~ 7002005 (-)
G115577 NA non-coding upstream 1058890 7734097 ~ 7734384 (-)
G115579 NA non-coding upstream 1066767 7741974 ~ 7742210 (-)
G115580 NA non-coding upstream 1067334 7742541 ~ 7742747 (-)
G115596 NA non-coding upstream 1167130 7842337 ~ 7842708 (-)
AMCG00018291 NA other downstream 1116 6610633 ~ 6652773 (-)
G115320 NA other downstream 702834 5950421 ~ 5951055 (-)
AMCG00018251 natd1,LOC107745813 other downstream 1287135 5356846 ~ 5366754 (-)
G115183 NA other downstream 1349460 5300107 ~ 5304429 (-)
G115174 NA other downstream 1366016 5286386 ~ 5287873 (-)
G115581 NA other upstream 1068011 7743218 ~ 7773892 (-)
AMCG00018344 NA other upstream 1966689 8641896 ~ 8648807 (-)
AMCG00018339 NA other upstream 1991530 8666737 ~ 8676808 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 2564605 9239812 ~ 9258202 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 3099099 9774306 ~ 9779545 (-)

Expression


Co-expression Network