AMCG00018288 (clcn7,LOC106594444)


Basic Information

Item Value
gene id AMCG00018288
gene name clcn7,LOC106594444
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6737585 ~ 6754642 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018288
CCTGTGATATGGGAGTCATATGAAAACTGACGGGAAGGAGTGCTGCGGAAACATTGCAAACATTAAAGGGGGGAAACGGCAACACATACACAGGGCAGCACCGAGACCCTGCTCCTGGGAACCATGGCCAATATTACCAAGAAAGTGTCGTGGTCCAGCCGTGACGAGGACTCGGCCCCGGGGGAGGGCACCCCGCTTCTGAACGGCACCGGTGGAGCGGTGAGATCCCCCAGACGGGTGTCAGATACAGGCATGTTTCGCATAGGAAGGCTGAGCACCGTGGATCTAGAGGAAGACATCACAGAGGATGAGGATACTATATTGGGCCGACCCAAGGAAATTCCTCACAACGAAAAGCTCCTTTCACTCAAATATgagAGCCTTGATTATGACAACAGTGAGAATCAGCTGTTTTTGGAAGAGGAGCGGCGCATGAGCCAAATGGGTTTCCGACTGCTGGAGATCAGCCGATGGATAGTGTGCGCCTTGATTGGCATCCTGACGGGACTCATTGCCTGCTTCATAGACATCGTGGTGGAGAAATTGGCCGGCGTGAAATATGACGTGGTCAAAAAGAGTATTGAGAAATTCACCGAAGTGGGCGGTCTGTCGATATCCCTGATTCTCTGGGCGGCTCTGAATGCCATCTTCGTCATGTTTGGCTCTGTGATCGTGGCCTTTTTTGAGCCCATCGCGGCTGGGAGTGGGATACCGCAGATAAAGTGCTACCTCAATGGAGTGAAAGTCCCGCGTGTGGTGCGTCTGAAGATCTTTGAGTATTTCCGCCGAGACACAGAGAAGCGGGATTTTGTGTCGGCAGGAGCAGCTGCGGGAGTCTCTGCCGCCTTTGGTGCTCCAGTTGGTGGGGTACTTTTCAGTTTGGAGGAAGGGGCTTCTTTCTGGAATCAGATGTTAACCTGGAGAATTttctttGCTTCCATGATCTCCACCTTCACGCTGAACTTCTTCCTGAGTGTGTACCACCACAAACCGGGAGATCTTTCCAGCCCTGGTCTCATCAACTTTGGTCGTTTTGAGAGTGAGAGTGTGGAGTACAGCCTCTATGAAATTCCCATCTTCATACTAATGGGAGCTGCAGggGGCGCTCTTGGAGCACTTTTTAACATCTTAAACTACTGGCTGACAATCTTCAGAATAAGGTATATTCATCGGCCGTGTCTGCAGGTGATGGAGGCCATGCTGGTAGCGGTTGTCACTGCTGCCGTTTCCTTCGCGATGATTTACTTTTCTGATGACTGCCAGCCCATCGGGGAAGATAGACTGTTCTGCGACGATGGGGAGTACAACTCGATGGCGACGGCCTTCTTCAACACGCCAGAGAAGAGCGTCAGAAGCCTCTTTCACGATCCGCCAGGCTCGTATAACCCCATGACCCTGGGCCTCTTCACTTTGAGCTATTTTTTCCTGGCCTGCTGGACCTACGGGCTGACGGTATCGGCAGGAGTCTTCATCCCAACCCTGTTGATCGGGGCTGCCTGGGGGAGACTCTTTGGCATCTGTCTGGCCAAGATGCCAACAAATGATACTGGCAAAATTTGGGCAGATCCAGGGAAATATGCCTTGATTGGAGCAGCTGCTCAGCTTgGTGGGATTGTCAGGATGACCCTCAGTCTGACTGTAATCATGGTGGAAGCCACAGGGAATGTTACATATGGCCTTCCCATCATGCTAGTGTTGATGACATCGAAGATAGTGGGCGATTACTTTATAGAGggCTTGTATGACATCCACATTAAACTGCAGAGTGTGCCTTTCTTACATTGGGAGGCTCCAGCTACTTCACATTCCCTCACTGCCAGGGAAGTGATGAGCTCTCCAGTGACGTGTTTTAGCCGGCTCGAGAAAGTGGGCACTATTGTGGAGATTCTCAGTAACACAACGATGAACCACAATGGCTTCCCAGTGGTCAGTGAATTCACAGATGGACACGTGcctGGAAAAATATGCGGATTAATACTGCGGTCACAACTGATTGTTCTTTTGAAGCACAAGGTGTTCGTGGAGAGGGCGCGCTCCCGCCTCAATCGGAGAACGCTGCAGCTGAAGGACTTCCGAGACGCCTACCCCCGCTTCCCCCCCATCCAGTCCATCCACGTGTCGCAGGACGAGCGCGAGTGCATGATGGACCTGACCGAATTCATGAACCCCACACCCTATACCGTGCCACAGGAGACCTCCCTTCCTCGGGTATTTAAGTTGTTCCGAGCCCTGGGACTGAGGCACCTGGTAGTTGTAGACAGCGAGAACATGGTGGTGGGGCTGGTGACCAGGAAGGACCTGGCGCGGTACCACCTGGGCAAGCATGGTCTGGAGGAGATGCAGCTGTCCCAGACGTGAGCGGAGAGCCACAGCGCGCTCTGTACAGCCTGTTCAAATTGCACTGTCCACCTGCGGCCCACCCAGACACCGCCTGCACCGCTGGGCAGAGATgagcgggggggcggggggttctAATCTGACATTATGTGGAAGATGCCAAAACGCTCTCAACAGCGTCAcctttaaaattgtttttcattattttaggaGATTTTTGTTgctccttttttttcttgttagttTTTTGCTGCAGTGactttcattatatatattgcacagtcatctgcatttattaatattgtttttttaacgaGGAACAGAGTGTTCCACTTCCGATTAGGCAGAGGAGAAGTGTCCTGGACTCTGTGTCTCCCTGCTATATATGATCTGCAAGTTTGAAtagtttttaatgattgtttAGTCTGAGattgcacaaacacagaagtatttatttcaactaACGGCTTCAGCGTATTTCAGTTACTGGTACTGGAACATTCCAGCTTTCAATAggagtgttttaaattaaatacaacacaggtttgtgtattcatttacaGCAAGATTTTTCATAGTTTGTTAATATTTCAGAAATTATGATTTGATTGAGTGAGTGGTGGGCAGCCATTGAAATGCTAATGACATGATTAATCCACCAATCGTTTGACTCGAGTCAAATCGGATAACGATACGATACATTATTTCAGCCTGACAACTTCGGTCAGTTGAACaccaacaaaataatttactgaAACTGAGAGGTTTATCAAAGACTTCTGAAATGAGAATTAATCCCAGGTGAAGGGTCCCATCTCTTTTTGTTAGAatgcacttttcttttcagttaaATTCACTTTTCAGTGCTGTACTGAGATTGAAGTagaatgttattatttaaaaaatatgcaacagttgatgtataaatatataatgagagTTTTTTTGAAGTGAGATGCAATTTAATagattgttttgcaaaaatacCAAACAAACTGAGTTTgtaaactggaaaaacaagtcTAGCTGAATTTTATTAGTTGTTTTAGtcgtctttttttattattattaactccATTTTAATTCACTGGTTCTTTTTCATGTGGTTATCAAGTATATAAAATAAGGTCCAATGTCAGAAATGAAAACCTGTTTGGCCATTTTGAGTTGGACTCTTGTGCTCCGccatgtaaaatacatactttgttTTGTCCATGACTTCAAACACTCCGTGACTGATTTATCATGTTTAGAATTCtacaataaagtatttttaataataattttaatatattacttttcacATGAGTCTGATGGTTATCAACACAAAAGCTGATTGAAAGAGATAAAACAGCCATGCGGATAAGAGAATCAGCTCAGAATGCAAGAATAaccagatgaaaatgaaaatccacACGTGTGGtctatttgtgttttgatgagtgtgtgttttggaGGGTGGGGGTGTTGATATCTTTTTGACAGTGGCTGCTACtttgcacttattttatttcacacatgTAATAAGATATACCGATTTTAACGTAGGTTAAAAACTGCTGTTTGCATCATGTTTACTCCTCCTGGAAGTAACTTTAAATAGAtggatttaaacaaattatttgagAATACAATTGATTCCATTTTAGCAACTTACTGTCTTTCTGCTTAGACCATTGTTGTGCTGCTTGAGCTGTTTTCATTCATGTCTTGTTTTGGACACACTCAATACACCACACAGTGCCTTTTGTCTTCCTGTTATTACTAatggttttaatacatttttgttatgcAGAAAACCCCTAAAGATATGGAAATAACAGTGTTACCCCCATCTCTAACCAGCTGGCAAATGCAGCTGTTATCAATTGTGTTCAATATTTCTAAAACTGTATGTAGCGGCTTCAGTTTaaagtgtttgtattgtttgtatcaGACATCTAAACTTTTGTGGGGTTTTTTCCTGTAACTAAAAAAAATTGATCTGCTTTTTccccatattgttttgtttttgttcaaactttgtttttaacattgtatGTATTGAGGAATGATTCCAGATTTTGCTGAATTATATACCTCAACATTctgggaaattatttttgtgCACCAATAAAACTActgattaataata

Function

symbol description
clcn7 Predicted to enable chloride transmembrane transporter activity. Predicted to act upstream of or within chloride transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in several structures, including EVL; blastomere; head; periderm; and pleuroperitoneal region. Used to study lysosomal storage disease and osteopetrosis. Human ortholog(s) of this gene implicated in autosomal dominant osteopetrosis 2 and autosomal recessive osteopetrosis 4. Orthologous to human CLCN7 (chloride voltage-gated channel 7).

NR:

description
PREDICTED: H(+)/Cl(-) exchange transporter 7-like

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0044070 regulation of anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0030554 adenyl nucleotide binding molecular_function
GO:0005247 voltage-gated chloride channel activity molecular_function

KEGG:

id description
K05016 CLCN7; chloride channel 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018288 True 4471 mRNA 0.44 23 6737585 6754642

Neighbor

gene id symbol gene type direction distance location
AMCG00018287 NA coding downstream 8204 6716884 ~ 6729381 (-)
AMCG00018284 arhgdib,LOC108432841,LOC107590585,LOC107685923,LOC107568023,LOC106601960 coding downstream 62378 6653889 ~ 6675207 (-)
AMCG00018283 c2h16orf72,zgc:77849,LOC105900007,LOC107590581,LOC107738628,LOC107685917 coding downstream 144483 6584976 ~ 6593102 (-)
AMCG00018293 grin2a,LOC107685916,LOC107690256,LOC107568390 coding downstream 272728 6309369 ~ 6464857 (-)
AMCG00018286 NA coding downstream 506578 6219973 ~ 6231007 (-)
AMCG00018285 NA coding upstream 5342 6759984 ~ 6764079 (-)
AMCG00018290 NA coding upstream 21695 6776337 ~ 6777438 (-)
AMCG00018298 NA coding upstream 26129 6780771 ~ 6783583 (-)
AMCG00018299 NA coding upstream 66953 6821595 ~ 6826223 (-)
AMCG00018301 NA coding upstream 72977 6827619 ~ 6850794 (-)
G115395 NA non-coding downstream 518369 6217528 ~ 6219216 (-)
G115332 LOC100136012 non-coding downstream 690967 6046030 ~ 6046618 (-)
G115279 NA non-coding downstream 983563 5750092 ~ 5754022 (-)
G115278 NA non-coding downstream 987542 5749783 ~ 5750043 (-)
G115277 NA non-coding downstream 989226 5747458 ~ 5748359 (-)
G115534 NA non-coding upstream 247160 7001802 ~ 7002005 (-)
G115577 NA non-coding upstream 979455 7734097 ~ 7734384 (-)
G115579 NA non-coding upstream 987332 7741974 ~ 7742210 (-)
G115580 NA non-coding upstream 987899 7742541 ~ 7742747 (-)
G115596 NA non-coding upstream 1087695 7842337 ~ 7842708 (-)
AMCG00018291 NA other downstream 84812 6610633 ~ 6652773 (-)
G115320 NA other downstream 786530 5950421 ~ 5951055 (-)
AMCG00018251 natd1,LOC107745813 other downstream 1370831 5356846 ~ 5366754 (-)
G115183 NA other downstream 1433156 5300107 ~ 5304429 (-)
G115174 NA other downstream 1449712 5286386 ~ 5287873 (-)
G115581 NA other upstream 988576 7743218 ~ 7773892 (-)
AMCG00018344 NA other upstream 1887254 8641896 ~ 8648807 (-)
AMCG00018339 NA other upstream 1912095 8666737 ~ 8676808 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 2485170 9239812 ~ 9258202 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 3019664 9774306 ~ 9779545 (-)

Expression


Co-expression Network