AMCG00018289


Basic Information

Item Value
gene id AMCG00018289
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6128713 ~ 6155791 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018289
ATGCATTGTGGTCGCAGTGATGAAGCCAGCGGTGTTGCACTCAAATGGGTCCGAGTTGGAGCTGAAGTGCATCTGAGCAGGAAACAGCCGCAGCATCACCAGCTGCTCAGGACGACCTTGGACCATGTGAAGTGGACACTCGGCCATGCGTCCTCGGGGGAGATCCAGGGTTTGCTCACTGACTTGCTGGAGGCTGGCATCCTCTCCAAGGACTACTATCTGTGCCTCACGAAGGAGAAAGATGCCGACGACCTTGCTAGAAGGATCTCTTTACCTGTGTGGGAGAAATGGAATATGTGCCAAAGCAAGATTCACGCGACGAGCCGCAGCTCTGCGCCTCCAGAGCCAGAGATCAGCATCCCCTCCATACACACGACCTCAGTCCATGTGGATGCCTCGGCTGCAGATGATGAGGGGAACCAACTGCCTCTGGCAACAAATTTTATGGACTTACTGTGTTCCCTGGACCCTGAGACCAGCAGCCTGTGGGAGGACTGCAATTCTCAGAGCTCCTACCCACTGGAGGATAGAGAAAACATAGGTGAAATCGAGACAAGCCCAGCGACAGCAGAAGCAGACAGTTCAGACGCGCCATGCCatgaaacaaaagtgaaaagtaCCAAGCTAGGAAAACGGGATGGCCCAGCAGTCCAGGTGTTTCAAACATTCACTGCTCTTCCACCGCAAGTTATTAACATCCCCGTAGGCAACACTGTCAATCCTGGGGGGGCTACCTATGTTTGGGTCCCTCCTGCTTCACTGCCCTCACCCAAGCCTCAGAATCCGCCAAGCTCACCCGAGCCAGGGACCGTTGTGTCTGCAGACCTTGCGAATGTCAACCACGCACTTCTCAATTCCTCTTCGGATTCAATTAGCGCATCACTCTCTCCATCATCAGCCTCTCCTCAGTCTTCCACAACAGAATCTGGATTATCACCGCCTCCTCCTCAACCGGTTCAGACCCCTGAAAAACCAAAATGTGTTGAAGACTACATTGAATCCCTCAAGTCTTTCATGCTTGACAACTGCCAACTTATGAGTATGGAGACTGAAATCGCCCTGGAGAGACTGTATGTGGATGTGCCTTTGGTGCAGAGGCAGATCAAGACAAAGCCAGGCAAGCACGGGAACAAGTATCTGGAGAAAGAGCTAGTCATCTGTGATATAGCAGAGACAAGGAAATTTGCGATACAGAGAAATGAACTTTTTGAGGATACAGACCAGAAACCAGCCAAGGTGATTGCTTTGCTTGGAAAGGCTGGGATGGGCAAGAGCACATTCATCCAGAAGCTTTGCCAGGACTGGGCAAATGGAGACTATCAGCGCTTTGAGTTTGTCTTCTCCTTTGAGAGCAAGAGACTGAATGTGCCAGGGGAGACATTTAGCCTGAGGAGCTTGCTGTTTGACCCTCTCACATCCCCACCTGGCACAAATGCCCACAAGGTCTTCAGATACATTCTTGACAACCCCCAAAAGGTGTTGATCATATTTGATGGTTTTGATGACTTTCAGGACAGCGAAGGACTTCTACATAATCCTGCTACCAGTCACACAAAAGCAACCTACAGCATTAAACAGCTCTTTTCGGGTCTGTTTCAGAAGAAGTTGCTTGCTGGAAGTACACTATTAATTGCTGCCAGACCGAAAGAGGTTTTGAACCAGTTTTTGGGCAAAGTCAACAAAATTGTAGAGTTGTGTGGCTTTTCAGAAGAAGAGATAGAGTTGTACATGGCAAGGTATTTTAATGGTACCTCATACAGTGACGGAGGCTGGAAGACAGTGAAGAACAATAGATTTCTATTTAGTCTATGTTATAATCCTTTGATCTGCAGGTTTGTTTGCTTCCTCCTTGAACATGTGGATGAGAATCAAAGCTTACCGTCTACACTTACACATCTCTACCAACAGGTGCTTCATTATAAATTACACATGAATTTGCCTGAAGCAGATACTTCAAagaagcaacagcaacaacatatTCCAAAGCTAGGGGCCTTGGCTTGGGCGGGTGTGAAGAATCACACCTGTCTCTTGAACCAAGAGGACTTGGCCTCCACAGAACTGAGAGAGTTTGGACTGAGTGGTGgtgtttttattccatttagCTTGAGACACAGCAATGGTGAGGAACAGTTTGGCCATGGATTTGCACATTTGCTCATGCAGAATTTCTTGGCTGCTTTGTATATCACAATGTCCAAACAACTGACTGATAAGGGCCTTGTCAACCAAATGGTGCtccagcaaaagaaaaagaagcccCAGAGTGAGTGGCTGGACGTGACCCGATGGTTCATGATGGGGCTCCTCTTCCAGAAAATACCTCCCTTTCTGGACGGCTTTCCTGACGGCACTGTCAACACTATGGCTAAGAGGAATGCTATGGAAGACTACTTGAAAAAGATGAACCCCAGCGATCTGAATGGCAACAGGCTGCTGGAGCTCTGCCACTGTGTCTATGAGAGTCAAAACATGAAACTCATTAAAGACCTGGTGCAGAAATTACCTGAAAAGATATCTGGAGCCCAGCTCACCCCACCGGATGTTTTTGTCCTGCATTACTTCCTGAAGAAAGTCAAGGAAACCACAAAGACCTTCTCCGTTGATCTGCAGGAATCCGGCATCAACCTCTGTGGCCTGAAGGAGCTGGTGGGGCTGAAGTGTGTCACGTCTTTCAGGGCTTCTATATCCGATACGATAAGCCTGTGGGAGCATTTGCAGCACACCGGGGAAAAGGAGCTATTAAAGAAAGCAGTGGCCAAGTTCACCATCAACCCTTTCAAGGCAAAACGGATCACTGATGTGGAAAACCTGGCTCTCCTTGTTCAAATCTACAGACAGAAAAAGCTTATCCATTGTGACTCTGGTGATCCTGAGTCCAACCTGGATGAAGATACGTTCCACATTCCAGCTGTGGAGAACCTTCACGATCTGGAATTTGCGTTGGGCCCACAGAACGGATCTTTGGGTTTTCTAGGCCTGGTGGAATTTCTTCCCTCGTTACAGTGGCTAAAACACTTGGACCTGGAATCGCTGACTGACAATAAAATAGGAGACATGGAGGCAGAGAAATTGGCAGAAGTGCTGCCAGCGCTATCATCACTTGAGACTCTGAATCTGTCCCAAAACTGCATTGGAGATAAAGGAGCAGAGAAACTGGCCCAGGCCCTTCCCTCTCTGATGTCACTAAGGAGTCTCAGCTTGTACAGTAACCTAATCGGTGACAGTGGAGCAGAGAATGTGGCAAAAGTTCTCCCAGAAATGAAGTCTCTCATGGATCTAAATGTGAAATATAACAAGATCACAGATGTTGGGGCGCTCAAGCTAAGTGAAAGCCTGAAAGGTTGTCCATGGATAAAAAGCATTGCAATGTGGAACGAGTCGATCCCACACGGGGTTCTAGAACACCTAAAGCAACAGGACTCTAGAATCAACACGCTCTAGAGAGGTTACCCTCCATCCAGAAACACACCTGCtgagagaaaaggaagaaagcaCTGCAGCACCTTTTTACAGAaggctttttcattttcagggcTTATTTCATATGAATATGGTggtttttttatgattgttatttttatgattttattttttcaagtttaATTGGATTTATAACCATTCACTACAACAGAATTGTACATGCAGaattcattgtttctgtatgtctcTGACTGTGTTTTACACTAATTTCTGTTCCCAGTTCATTTCAAACTGACCTCTTTATTATCCTGCTTTctatgtacaaatacaaaatgactcTTCACACTTACAATTGAACAATCACTGGACTCTATTTTCATCAACTTGAGGCATTTTGCTATTAAGAAACTTGACTTGGcaccggattaaatcaaaactttgacccaacccaaacctgtacatcatagcggttacatttctgattaggagAAAGTGGCGTCTAACTAAAAacgaagctgcaactgagtacagttctgtagttttctgttagcaggtgggtcaaagttttgatttgctgCCAccaaggctgggattaaatggttttgaaaataGTCCTTCACACaagcaataaaatatttaatttaaaaaaacattaagctgCTTTATCAGTATTATACTGAAACTATAGCAAATTATCTGCACTAgaatttgattttgttaatttggcATATAACTCACTTAAGCACAATTATAAGTCCAGctataaaacaatgcaatgtgtAACTAGTTTACTTTTTTAGACACGCATCGTGACtagaaaaacatgtaatggAAGAGATTTTAAGAGACCCCATTTAGTTTCTGAGTAACATGTGATTCATAGTTGAAGAAAAGGACGGGGGGACATTTCATTGTAAAACTATATTACTTTGTAAAGAGTAATGTAAAGATTTGAgagaattttatttttagtaagtTTTGTACTGTTTGAAAGAGTAGCTTTGGAATTGCACCTGACCATACCTTATGCTGCTTATGTACTTCTTGATATCTTCTGTAccataaatgtttatttttaatttaaaagtatgttgTCCAT

Function

GO: NA

KEGG:

id description
K08060 CIITA; MHC class II transactivator

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018289 True 4522 mRNA 0.44 18 6128713 6155791

Neighbor

gene id symbol gene type direction distance location
AMCG00018274 clec16a coding downstream 3881 6068303 ~ 6124832 (-)
AMCG00018263 NA coding downstream 242713 5881546 ~ 5886000 (-)
AMCG00018265 NA coding downstream 319870 5794517 ~ 5808843 (-)
AMCG00018264 rasd1,LOC107653935,LOC107720458 coding downstream 343813 5783076 ~ 5784900 (-)
AMCG00018262 cops3 coding downstream 383009 5741029 ~ 5745704 (-)
AMCG00018292 nubp1,LOC107690260,LOC107590599 coding upstream 2489 6158280 ~ 6182812 (-)
AMCG00018286 NA coding upstream 64182 6219973 ~ 6231007 (-)
AMCG00018293 grin2a,LOC107685916,LOC107690256,LOC107568390 coding upstream 153578 6309369 ~ 6464857 (-)
AMCG00018283 c2h16orf72,zgc:77849,LOC105900007,LOC107590581,LOC107738628,LOC107685917 coding upstream 429185 6584976 ~ 6593102 (-)
AMCG00018284 arhgdib,LOC108432841,LOC107590585,LOC107685923,LOC107568023,LOC106601960 coding upstream 498098 6653889 ~ 6675207 (-)
G115332 LOC100136012 non-coding downstream 82095 6046030 ~ 6046618 (-)
G115279 NA non-coding downstream 374691 5750092 ~ 5754022 (-)
G115278 NA non-coding downstream 378670 5749783 ~ 5750043 (-)
G115277 NA non-coding downstream 380354 5747458 ~ 5748359 (-)
G115243 NA non-coding downstream 520644 5607833 ~ 5608069 (-)
G115395 NA non-coding upstream 61737 6217528 ~ 6219216 (-)
G115534 NA non-coding upstream 846011 7001802 ~ 7002005 (-)
G115577 NA non-coding upstream 1578306 7734097 ~ 7734384 (-)
G115579 NA non-coding upstream 1586183 7741974 ~ 7742210 (-)
G115580 NA non-coding upstream 1586750 7742541 ~ 7742747 (-)
G115320 NA other downstream 177658 5950421 ~ 5951055 (-)
AMCG00018251 natd1,LOC107745813 other downstream 761959 5356846 ~ 5366754 (-)
G115183 NA other downstream 824284 5300107 ~ 5304429 (-)
G115174 NA other downstream 840840 5286386 ~ 5287873 (-)
AMCG00018220 NA other downstream 1477072 4646147 ~ 4651641 (-)
AMCG00018291 NA other upstream 454842 6610633 ~ 6652773 (-)
G115581 NA other upstream 1587427 7743218 ~ 7773892 (-)
AMCG00018344 NA other upstream 2486105 8641896 ~ 8648807 (-)
AMCG00018339 NA other upstream 2510946 8666737 ~ 8676808 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 3084021 9239812 ~ 9258202 (-)

Expression


Co-expression Network