AMCG00018290


Basic Information

Item Value
gene id AMCG00018290
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6776337 ~ 6777438 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018290
atgTTCTTAACGCATTGCCCCTTccctgtcactgtgtctgtgtgtgttcaagGCATTGCTGTGATGACCATGCAGACCCCCCCCGTGAACAGCATGAGTCTGGACCTCCTGACCGAGTTCTCCATCAGCCTGGAGAAGCTGGAGATGGACCGCAGCTGCCGGGGAGTTGTCCTGACCTCGGTGAGCGAGCGAGGGATCTTCACGGCGGGGCTGGACCTCACCGATATGTACGAGAAGAGCCCAGAGTACTGCGGCGAGTTCTGGAAAGCGGTGCAGGAGATGTGGCTGAAACTTTACGGCTCCAATATGGTCACCATCGCAGCCGTTAATGGCTCCAGTCCAGCGGGGGGCTGCCTGATGGCCATGTCGTGTGACTACAGGATCATGGCCGACAGCCCCAAGTTCAAGGAGACCATGGTGAACACGTTGGGCAATAGGACGACTGAGCTGGCTCTGCAGCTGGGTCTCCTGTACAGCGCCCCCGAGGCCCTGAAGATCGGCTTGGTGGACCAGCTTGTCCCAGAGGAGAAGGTCCTAAGCACGGCCACCAGCACCATGGCCAAATGGTTCACCATCCCAGGTCAGAGTCCACTGAGTTCAAAGCTGTCCACATAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K13238 ECI1, DCI; Delta3-Delta2-enoyl-CoA isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018290 True 615 mRNA 0.58 4 6776337 6777438

Neighbor

gene id symbol gene type direction distance location
AMCG00018285 NA coding downstream 12258 6759984 ~ 6764079 (-)
AMCG00018288 clcn7,LOC106594444 coding downstream 21695 6737585 ~ 6754642 (-)
AMCG00018287 NA coding downstream 46956 6716884 ~ 6729381 (-)
AMCG00018284 arhgdib,LOC108432841,LOC107590585,LOC107685923,LOC107568023,LOC106601960 coding downstream 101130 6653889 ~ 6675207 (-)
AMCG00018283 c2h16orf72,zgc:77849,LOC105900007,LOC107590581,LOC107738628,LOC107685917 coding downstream 183235 6584976 ~ 6593102 (-)
AMCG00018298 NA coding upstream 3333 6780771 ~ 6783583 (-)
AMCG00018299 NA coding upstream 44157 6821595 ~ 6826223 (-)
AMCG00018301 NA coding upstream 50181 6827619 ~ 6850794 (-)
AMCG00018304 NA coding upstream 89474 6866912 ~ 6876178 (-)
AMCG00018302 LOC107568067,LOC107685930,LOC107733849 coding upstream 356460 7133898 ~ 7136847 (-)
G115395 NA non-coding downstream 557121 6217528 ~ 6219216 (-)
G115332 LOC100136012 non-coding downstream 729719 6046030 ~ 6046618 (-)
G115279 NA non-coding downstream 1022315 5750092 ~ 5754022 (-)
G115278 NA non-coding downstream 1026294 5749783 ~ 5750043 (-)
G115277 NA non-coding downstream 1027978 5747458 ~ 5748359 (-)
G115534 NA non-coding upstream 224364 7001802 ~ 7002005 (-)
G115577 NA non-coding upstream 956659 7734097 ~ 7734384 (-)
G115579 NA non-coding upstream 964536 7741974 ~ 7742210 (-)
G115580 NA non-coding upstream 965103 7742541 ~ 7742747 (-)
G115596 NA non-coding upstream 1064899 7842337 ~ 7842708 (-)
AMCG00018291 NA other downstream 123564 6610633 ~ 6652773 (-)
G115320 NA other downstream 825282 5950421 ~ 5951055 (-)
AMCG00018251 natd1,LOC107745813 other downstream 1409583 5356846 ~ 5366754 (-)
G115183 NA other downstream 1471908 5300107 ~ 5304429 (-)
G115174 NA other downstream 1488464 5286386 ~ 5287873 (-)
G115581 NA other upstream 965780 7743218 ~ 7773892 (-)
AMCG00018344 NA other upstream 1864458 8641896 ~ 8648807 (-)
AMCG00018339 NA other upstream 1889299 8666737 ~ 8676808 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 2462374 9239812 ~ 9258202 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 2996868 9774306 ~ 9779545 (-)

Expression


Co-expression Network