AMCG00018291


Basic Information

Item Value
gene id AMCG00018291
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6610633 ~ 6652773 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018291
TCGTCATGCACTGGCCTGCTTTATCAGCACTGGTGCCCGTGGACAGCACTGCAGGTGTGTCTATCCCGAGCAGCCAGGTGCATCGCCATGAGGTTTAAACTGTGTCTGCTTGCCCTGCTTTGCGCATCGGCCTCCTACACCACAGCCGAGGAGAACGGAGAAGACGCTCCAGGAGAGGTAGAGGAGGAAACGGTGGAGAAGTCAGAGGAGATCACAGAAGAAAAGGGCGTCTTGGTCCTTCATGAGAAAAACTTTGCGAGGGCGCTCAGCGAGAACAAGTTCCTTCTTGTTGAATTTTATGCACCGTGGTGTGGGCACTGCCGTGCACTGGAGCCTGAGTACACCGCAGCGGCAGGGATCCTGAAGAACACAACCTCCGACATCAGGCTCGCTAAAGTGGACGCCACCGAGGAGAAAGGCCTGGCAGACGAATTCGGAATCAGCAGCTTTCCCATCCTGAAATTCTTTCAAGACGGCGACAGGAAGAACGCCATTGAATTCACAGGAAAGAGGAAAGCGCAGGGGATCGTTCAGTGGCTGAAGCGACGGACTGAACCCAGTGCTTCTGTCCTAGAGAGCGACCTCGACAGTGAGGATGTGAAGACCTTTTATGAAGTGGCCACCGACATAGTAGATATTACCTTTGGCATCACCAGTGATCCTGCTGTTTTCCAGAATTATGATGTTTCCAAGAACAAAgtcatattatttaaaaagTTTGATGAAAAACGTGCCGATCTGGAAATTACAGAGGAGCAGGAACTGGATAAGGAAGAGCTGACGAAGTTCATTCAAACCAACGCCCTTGAACTCGTCATTGAGTTTAATGAGCAGAATGCAGACAAGATTTTTGGTGCGAAAATAAACCATCACATCCTGCTTTTCATCAACAAGACTTTGGAGAAACACCAGCCGGCTCTGGAGTCATTCAGAGAAGCTGCCTCTGGGCTCAAAGGCCagGTGCTTTTCATTCTGATTGATGTCAACGCCAGCAACGATCACGTCCTGAACTACTTTGGCTTGAAAAGCGAAGATGCTCCCACCATCCGCCTCGTCAACATCGAAACAACCAAGAAGTACACCCTGGAGCAAGCAGATATCACAGCTGAAAACCTGCAAAACCTCTGCCAGGGAGTGCTGGAGGGCACAGTCAAGCCTAACCTCATGAGCCAAGAAATCCCAGAGGATTGGGATAAGAAGCCCGTGAAGGTGCTGGTAGGCAAAAACTTTGAGCAAGTGGCCTTTGACGAAACCAAGAACGTCTTTGTGGAGTTCTATGCCCCCTGGTGTGGACACTGTAAGGAGCTAGCACCAATCTGGGATGAGCTggcagaaaaatacaaagaccACGAGGACATTGTCATCGCCAATATGGATTCCACGGCTAACGAAGTAGAAGGGGTCACCATTTCTGGGTTTCCCACTCTGAAGTACTTCCCTGCCGGTCCAGAAAAAAAGATTGTAGACTATAATGGTCAGAGGGATCTGGAGACATTTTCCAAGTTCCTGGATAATGGAGGTGAACTGCCTGAGGAAAAAGAAGAGATGCTGCTCATTACGGACAAGTGCAGACTCAGCCCCAGCCACAGCAACAGCCACGGACAGCTTCTGTACATCCTCATTGACACGGACGAAAGCAGGAACGGGCGGATCTTTGAGTATTTCCAGGTGCGCGACGTGGACACACCTGCGGTCAGACTGCTGAACCTGACGGACAACATGCAGTACCAGATGCCAGCAGACGAGGTCACTGTGCGCAATCCGAAGCTGGATAGTCAACCCATTCCTGAGAACTGGGACAAGCAACCAGTGAAGGAACTTGTGGGCCTGAATTTTGAAAGAGTTGCTTTCAATGATGAGAGGAAcgtttttgtcatgttttATAAGCCATGGTCTCAGGAATGCAAGGATCTGTTTCCTGTGTGGGAGAAAGTGGGGAAGGTGTACGAAAACCACGAGTCTGTGGTGATCGCTAGGATAGACAGCACAGCCAACGACGTTCACACTCTGCTGCATGAGCGCAACCCCATGTTCAAGTTCTTCCCAGCGGTATACGGTGAAAAGGTGGTTCCCTATTCTGGAAAAAGAACGTTAGAAGACTTTGTTCAGTTTGTTGAAAGTGAAGTGGAATTAGCCAAGGAAGAAAAGGCAAAGgaggaggtggagagaaacaaaatagcCGAGGCAGAGAAAGcaaaagagaaggagaagaaggaggagtTATTCTTAAAAAGAGCgagaaagagaaataattacccccctcccctcccctccgcAGAGCACCGTGAGGAGGCGAGGATGAGCTCCACGACCAAAGCAGGGGACACGCTGCCCGCCCCACCGCCCTATGGGGGACCGGGTGGTACAATCAAAACTGGTGCCTCTGGTGTGACGGTCTACCATTTACACTCCCCAGTTAGCCCACCCCCACCGAGAGATGGGGAGTACGAGAACAAAATCGCAGactaCAACCAGTCTTCAGAAAGCCCAAACAAGTTTGTCAGTTATGATGACACACAACTGGGACGTAATCCGGGAATGACAACGTGCATATACTGCCGTCAGCAGGTCCTGACCAACGTCCAGTACAAAGTGGGAACGTATGCTTGGCTCATGTGCCTGCTTTTTATACTATGTGGGCTCATCGTTGGCTGCTGCCTGATCCCGTTTTTTGTTAAATTCTTCAAGGATGCTTATCACACCTGCCCCAAATGCCAGCGCATGCTTCACATTCACAAGAGGAGCTGCTTTACGTCGAAGATGTCAGTTGTGGATCTTGATTGCTTTTTCCAGAAATATTGTCCACGGGTTTTCATTGTCACTCAAGTCAATCATCTATTTGGAAAGCAACACGATATAATGCATGTAGACAACGAGCTCATGCCGATCAGATGGCAGACAGCTTCGCAGACCGCTTCACATCAAATCAAAGAACACACTGGCAAGCGCGTCAGACTTCAGACTCGGGGAGGACAAAACCTCCTCCTTGGCAGCAGCATGAGGTTCGAGTTTTTCTTGCAAGCCACGTTACTAATGAGTGTGAGCTTCCTGtctctccttcctcttttgAGCCTCCACTCGCTTCTCCTCTTGAAGTCGCTCGACAAGCTGCTGTGGGATGTCAAGGTCTGTGACTGGCTGCAAAACCTCACCTTCAAggaggggagaagaaaaaacaaaccacttaTCCTCCAGGAAGAAATCTGTTCTGACACATGGACATCAATACTAGACTAG
>TU144568
ACATTCCTATTAACATATACGCATGATCCCACCCATTGATATTTAATGAAGATGAAATACTATGCAAATTTCAAGAAAGGAGTGGCAGTAGAAACTGGTGGAAACACCTGCATTTTTCTCAGTGTTACTTTGGGCTGCGTTGGATTTGGATCACCTGACTATTCACTGAGCACCGTGAGGAGGCGAGGATGAGCTCCACGACCAAAGCAGGGGACACGCTGCCCGCCCCACCGCCCTATGGGGGACCGGGTGGTACAATCAAAACTGGTGCCTCTGGTGTGACGGTCTACCATTTACACTCCCCAGTTAGCCCACCCCCACCGAGAGATGGGGAGTACGAGAACAAAATCGCAGactaCAACCAGTCTTCAGAAAGCCCAAACAAGTTTGTCAGTTATGATGACACACAACTGGGACGTAATCCGGGAATGACAACGTGCATATACTGCCGTCAGCAGGTCCTGACCAACGTCCAGTACAAAGTGGGAACGTATGCTTGGCTCATGTGCCTGCTTTTTATACTATGTGGGCTCATCGTTGGCTGCTGCCTGATCCCGTTTTTTGTTAAATTCTTCAAGGATGCTTATCACACCTGCCCCAAATGCCAGCGCATGCTTCACATTCACAAGAGGAGCTGCTGTGATTAACTGCCTTAACGCCTTTCAATGCCCACACCTCTTCCTTACAAAATCAGTAATAAGATTAAAGGGGATGTACAAGTGTCACATTGGTGATTCAGTAatttgtgtacatgtatatttttgttgcatgaattaaaatgtcaccCTGTGGAAGACCAAGCAGGTGGCATGTATGTGGAAAAGCCTTAATCCCAGAGTCCTGTTGTTCAAGGGTTTCGGGGGTTCTGTGAGGAACATTTTAACTGTTGATTAAATGTGCTATGGAAACTCTTATGACCATCCATTTGACTTAATAAAATTGTACCTGTTATATGaagtataaaaatgtaaataaccaCTTATTCATTGACTACCCTTGTTGTATCTAGGTGTATGGTGACTGGAGTACTTGTGATTTAACTAACCTAATACTATgcacatgttaaataaataaaaatcccaaaCTCCTTATGTAAGGAATAGCAAGCAATTTATTGCTAAACTCTTAATACTTGAAGACTTCTAACAATTGACTAATAGTCCTTGCAGTGATTGAGAGCCTTTTACACCTGTGATGGGTAGCTGTACATTGGAGTAGTTTACAAGTTTGAAGtgcaata
>TU144582
ttaaagtattaacaGCATGTGATCTTATTTTGCACAGGTCCTTGGGTAAGATTTCTAGACCACAAAAAAGCAGGTCAAGACCTTCAGGAATACATCTTTACAGTTAACAGCATTCAGAAATTGTACTGACCACACAGTACATGTCCTTCGGTTTCCCACACATTAACTCTTATTCCATTCATCCATAAGTTTATCTTTTGAAGCTGTGCAGAGATTTACACTAGAACGGCCATTTATGACTCGTATCTCTCTCTACCAGTATATCAGATGAAACAAAGGAATGCAGTTTTGAACAAAGCAAGAAACGACCAATGAACTTATCAAAAAGCATAAACTAGACTTGCTGGTTTTTCTGTGTGATGTATACCatggtgattgttttttttttttaatcaaaatgtgaGGGAGTAATAGAAACATAACTTACCAAGCACTTCCTATATGTGGTCCATTTGTGCTCGATCTCTGCAGATGCTGCTCATTACGGACAAGATAAACCTAAAACGATGGATCCAAACACTGCTGGTCCTGtcaacaaggaaaacaaaaacacaatttccatCAATATCAATTCCATGCCACCTACTCCTGCCCCCGTAGTGCAGACTCAGCCCCAGCCACAGCAACAGCCACGGACAGTTCATGTTGTGCAGGCGATTCCTGTGCAGGGTATATACCACAATCTTGCAGAGAACCCCTGCACCACAACATGCACTAACTGCCAACAGAGAATCACAACTAATGTGGTCTACAAAGCAGGGACCTTTTCCTGGGTgatgtgcattgtttttgttattttcggGTTGGTCTGTGGCTGCTGCATTCTCCCCTTCTTTGCGCAGATATTTTTGGATGCTCACCATAGTTGTCCCCTTTGCAACCAACACCTCGGTATTTATAAACGAATGTGACCTTTCACCACTGGGATGGTGCACTGCTGGTGTTGTTGATAGAAGACAGCATCTTCTGATGAAAGAACACCAACGATGGGGAAaggatgaaaatgtttcaaattcagATGCTTGGAATTATATCTGCTCTGGCGAAGACACAATCACTGAATGTACatgctatatatacatacacaatttttttctttttctgtcattttctttaaaactgcAAAGTACATACACTGATTTAGGGCTTTGAAAGAGGTTTCAtcaaatttgatttgattgggcagtatatatttttgtctccCTCTGCTGTTGGTAAAAGATATAGCTCTGTGTTGCAACTTGCTTTTATACTGTATTCTACACCCAACTACCTGCAGGTAATACagattgatgccattgactacTACAGCCAACATGTCAGAGATAGCAATGGCTATGCCCTGTTGGTgccaaaaatataaaacctaCATCCGAAAAACAAGACTCTATCGGTTACTCAAGGGCAGGAATAACCTTGCCTCAGAAAAGGTTTCAGTAGATTAAGCACTCCAATAAGACATGCAAATCCTGCCTGCAGGTTTTTATCTATACCTGCAAACATGTGAATTCTGAAATCTGTGCGAGTTTAAATGGTTTCCATTTGCTCAAAATTACCTACCAAGAACTATGGTAAAAATGCATAACTTAACAGAGTTCAACACATCACCTTTATTGTTTGCTACTCTCACTGTTctccttttatttatgtaattcatCCATAACTTTTTGGTTTAGACTGCTTTTATGCTTGATAGATCTAaaagtgacaaaataaaaaaacataacttgGACAAATAAACA

Function

GO: NA

KEGG:

id description
K09581 PDIA2; protein disulfide-isomerase A2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018291 True 3237 mRNA 0.50 24 6610633 6652773
TU144568 False 1240 TUCP 0.43 5 6618475 6623613
TU144582 False 1742 TUCP 0.39 5 6638342 6643272

Neighbor

gene id symbol gene type direction distance location
AMCG00018283 c2h16orf72,zgc:77849,LOC105900007,LOC107590581,LOC107738628,LOC107685917 coding downstream 17531 6584976 ~ 6593102 (-)
AMCG00018293 grin2a,LOC107685916,LOC107690256,LOC107568390 coding downstream 145776 6309369 ~ 6464857 (-)
AMCG00018286 NA coding downstream 379626 6219973 ~ 6231007 (-)
AMCG00018292 nubp1,LOC107690260,LOC107590599 coding downstream 427821 6158280 ~ 6182812 (-)
AMCG00018289 NA coding downstream 454842 6128713 ~ 6155791 (-)
AMCG00018284 arhgdib,LOC108432841,LOC107590585,LOC107685923,LOC107568023,LOC106601960 coding upstream 1116 6653889 ~ 6675207 (-)
AMCG00018287 NA coding upstream 64111 6716884 ~ 6729381 (-)
AMCG00018288 clcn7,LOC106594444 coding upstream 84812 6737585 ~ 6754642 (-)
AMCG00018285 NA coding upstream 107211 6759984 ~ 6764079 (-)
AMCG00018290 NA coding upstream 123564 6776337 ~ 6777438 (-)
G115395 NA non-coding downstream 391417 6217528 ~ 6219216 (-)
G115332 LOC100136012 non-coding downstream 564015 6046030 ~ 6046618 (-)
G115279 NA non-coding downstream 856611 5750092 ~ 5754022 (-)
G115278 NA non-coding downstream 860590 5749783 ~ 5750043 (-)
G115277 NA non-coding downstream 862274 5747458 ~ 5748359 (-)
G115534 NA non-coding upstream 349029 7001802 ~ 7002005 (-)
G115577 NA non-coding upstream 1081324 7734097 ~ 7734384 (-)
G115579 NA non-coding upstream 1089201 7741974 ~ 7742210 (-)
G115580 NA non-coding upstream 1089768 7742541 ~ 7742747 (-)
G115596 NA non-coding upstream 1189564 7842337 ~ 7842708 (-)
G115320 NA other downstream 659578 5950421 ~ 5951055 (-)
AMCG00018251 natd1,LOC107745813 other downstream 1243879 5356846 ~ 5366754 (-)
G115183 NA other downstream 1306204 5300107 ~ 5304429 (-)
G115174 NA other downstream 1322760 5286386 ~ 5287873 (-)
AMCG00018220 NA other downstream 1958992 4646147 ~ 4651641 (-)
G115581 NA other upstream 1090445 7743218 ~ 7773892 (-)
AMCG00018344 NA other upstream 1989123 8641896 ~ 8648807 (-)
AMCG00018339 NA other upstream 2013964 8666737 ~ 8676808 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 2587039 9239812 ~ 9258202 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 3121533 9774306 ~ 9779545 (-)

Expression


Co-expression Network