AMCG00018292 (nubp1,LOC107690260,LOC107590599)


Basic Information

Item Value
gene id AMCG00018292
gene name nubp1,LOC107690260,LOC107590599
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6158280 ~ 6182812 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018292
ATGGCGGATGTGCCGAGTGACGCGCCGCAGCatTGCCCTGGCACAACCAGTACCCAGGCAGGGAAGACCTCTGCTTGTCAGGGGTGCCCTAATCAGACGATATGTGCCTCAGGAATGCCCAAAGCCCCTGATCCCGcAATTGAAGAAATCAAGCTGAAGATGGCCACGGTCAAACACAAGATCCTTGTCCTCTCGGGAAAAGGAGGGGTGGGCAAGAGCACGTTCAGTGCACACCTGGCTCATGGCTTAGCAAGCGATGGATCCACAGAGGTGGCTTTGCTCGATGTTGACATCTGTGGGCCGTCCATCCCAAGAATCATGGGGCTTGAAGGGGAACAGGTTCACCAGAGTGGTTCTGGGTGGTCTCCTGTGTACGTCGAGGACAATCTCGCGGTGATGTCCATTGGGTTTTTGCTCAGCAGCCCCGATGATGCGGTCATTTGGAGGGGCCCAAAGAAGAATGGAATGATCAAGCAGTTCCTGAGGGATGTGGACTGGGGTGAggttgattacctcattgtggACACCCCACCCGGGACTTCAGATGAGCATCTGTCCGTGGTCCAGTACCTCAGCAGTGCCGGCATCGACGGGACCGTGATTATAACCACCCCGCAGGAAGTATCGTTGCAAGATGTCAGAAAAGAGATCAATTTCTGCCAGAAGGTGAAACTGCCCATCATTGGAGTTGTTGAAAACATGAGTGGCTTTGTGTGTCCTAAATGTAAGAATAATTCCCAGATCTTCCCTCCTACTACCGGAGGCGCAGAGAAGATGTGTCAGGATTTAAACATTCCTCTTCTAGGCCGAGTGCCCTTAGACCCTCGGATAGGAAAAAGCTGCGATGAGGGAAAGTCTTTCTTGGCGGAAGTCACAGATTCTCCAGCAACTGCGGCCTATAAGAGCATTATTCACACGGATATAGCCGTAGAGATTGGCAGCCTGAAGAGAGATCCCCGCAATGACCAGAGCCTGCAAGGAGAGGAACAATTAGTGGAGCTGCAGCTTTGA

Function

symbol description
nubp1 Predicted to enable iron-sulfur cluster binding activity. Predicted to be involved in iron-sulfur cluster assembly. Predicted to be located in cell projection and cytoplasm. Predicted to be active in cytosol. Orthologous to human NUBP1 (nucleotide binding protein 1).

NR:

description
PREDICTED: cytosolic Fe-S cluster assembly factor NUBP1

GO:

id name namespace
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0005829 cytosol cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018292 True 1011 mRNA 0.53 11 6158280 6182812

Neighbor

gene id symbol gene type direction distance location
AMCG00018289 NA coding downstream 2489 6128713 ~ 6155791 (-)
AMCG00018274 clec16a coding downstream 33448 6068303 ~ 6124832 (-)
AMCG00018263 NA coding downstream 272280 5881546 ~ 5886000 (-)
AMCG00018265 NA coding downstream 349437 5794517 ~ 5808843 (-)
AMCG00018264 rasd1,LOC107653935,LOC107720458 coding downstream 373380 5783076 ~ 5784900 (-)
AMCG00018286 NA coding upstream 37161 6219973 ~ 6231007 (-)
AMCG00018293 grin2a,LOC107685916,LOC107690256,LOC107568390 coding upstream 126557 6309369 ~ 6464857 (-)
AMCG00018283 c2h16orf72,zgc:77849,LOC105900007,LOC107590581,LOC107738628,LOC107685917 coding upstream 402164 6584976 ~ 6593102 (-)
AMCG00018284 arhgdib,LOC108432841,LOC107590585,LOC107685923,LOC107568023,LOC106601960 coding upstream 471077 6653889 ~ 6675207 (-)
AMCG00018287 NA coding upstream 534072 6716884 ~ 6729381 (-)
G115332 LOC100136012 non-coding downstream 111662 6046030 ~ 6046618 (-)
G115279 NA non-coding downstream 404258 5750092 ~ 5754022 (-)
G115278 NA non-coding downstream 408237 5749783 ~ 5750043 (-)
G115277 NA non-coding downstream 409921 5747458 ~ 5748359 (-)
G115243 NA non-coding downstream 550211 5607833 ~ 5608069 (-)
G115395 NA non-coding upstream 34716 6217528 ~ 6219216 (-)
G115534 NA non-coding upstream 818990 7001802 ~ 7002005 (-)
G115577 NA non-coding upstream 1551285 7734097 ~ 7734384 (-)
G115579 NA non-coding upstream 1559162 7741974 ~ 7742210 (-)
G115580 NA non-coding upstream 1559729 7742541 ~ 7742747 (-)
G115320 NA other downstream 207225 5950421 ~ 5951055 (-)
AMCG00018251 natd1,LOC107745813 other downstream 791526 5356846 ~ 5366754 (-)
G115183 NA other downstream 853851 5300107 ~ 5304429 (-)
G115174 NA other downstream 870407 5286386 ~ 5287873 (-)
AMCG00018220 NA other downstream 1506639 4646147 ~ 4651641 (-)
AMCG00018291 NA other upstream 427821 6610633 ~ 6652773 (-)
G115581 NA other upstream 1560406 7743218 ~ 7773892 (-)
AMCG00018344 NA other upstream 2459084 8641896 ~ 8648807 (-)
AMCG00018339 NA other upstream 2483925 8666737 ~ 8676808 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 3057000 9239812 ~ 9258202 (-)

Expression


Co-expression Network