AMCG00018293 (grin2a,LOC107685916,LOC107690256,LOC107568390)


Basic Information

Item Value
gene id AMCG00018293
gene name grin2a,LOC107685916,LOC107690256,LOC107568390
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6309369 ~ 6464857 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018293
ATGTTCTATGAAAAGGCAGCGCTGGTGGCCATAGCTGACGACTCCAATTTGTCATgTTACAGGTATCTGGAGATAAAGGAATCCAAACAAGAGCCGGGCCACCAAAGTCCTGAAATGAAGCCGAGTGCTCAGAGTGCAAGGCTAGGGAGCTCACTCAGAGTAAGACAACAATGGATCAACAAGAACATCCAATCAAATATTGTGAGACATGAAGAGGTGAAGAGACAGGTAGACCTCAACCTTCAAGTCTACCATCATGTGACAGGGGAGTCAGGCGTTCTCAAGGACAGAGGAATTCACAGAATGCTGGAGAATTTGGGCCTTTTCCCTCTGCAGGCTGACAGCGCCAGGGAAtttgtggCATCATTCTTTATCTTAAACTGCCTAGGCTTGGAGCCACCTTGCGTGGTGTCGGCGCTGACCGCCACCTCCACCGTGTTGGGGTTCGACTCGTTCAGGATACCAGTCAGCCACTGTGCTTCCAGTTCCTCCATCTCACCTGTGGGGGACAGCAAAAATTCAGCCCAGCTGAACAAGGAAGTGATTGTGAACACGAGGACACGATATTCCACGTTCCTGTTGAATCCCAGAGGACTGAGGTACTCAAATATAAAGACGGCCATCGCTGTGACAATGAGCAGCATCACAAACATCATCACCCACACGGAAGCACTGAAGGGCTCTGCAGAGGGAACGAGGACACAGAAGCGCGTCAAAAACTCTAATCCCAACACTCCAATGGGCCTGGACACAACCGCCTGTCCCGTATTCCCTGGAAACTTGCAATCAAGTCGAAGTCTGGGCACAGAGTTGCGCATGCAGGTGCCGGTCAGGCGCTCCACGTTCTCCACGATGACGAAGGGCGCCTCTTCCAGGGTGACGATGCTCAGGTGGTTGTCGTCGGACTCGGCGTCTCCGAAGGAATTGAATCGAGGCCAGACGGGGTACTTCAGGcCCAAAGGAAGGCTTAGgtgGATAACCATGGATACAGCTGGTCTTTGCCTCCGGTATGTCACCAAACTCTTCCAGCATGGAGACCGCCGCTGTGGTTATAATCCCAAGGCCGTCTCGCACCCGGGCCTCCAGAGGGACACCGAGATCATTCCAGACGGGAACTCGCCAGGGGTGATTTCGGTGTTCCCAGTGGTCAGGCTGGGAACGATCCAGTTGAAGCCATACCCTGTCAAACCCAAAGAGCGCGCCTCTTCCAGAATGTACGCGGCCTCGTCTTTGGAACAATACAGCAAGATCACAGAGGACTGGATCTTCTTCAGCTGGATCTGGGTCCTGGTGTCCCCAGCGACCGCATCCAGCGTGATCATGTTCTGTAAATCCCATCCCACGAAGCTGTTGTCCACCGTGCTCTTGAGGATGCTGATGAAATCCTGGTAG

Function

symbol description
grin2a Enables glutamate-gated calcium ion channel activity. Involved in calcium ion transmembrane import into cytosol and response to ethanol. Located in plasma membrane. Is integral component of plasma membrane. Part of NMDA selective glutamate receptor complex. Implicated in Huntington's disease; bipolar disorder; and schizophrenia. Biomarker of Alzheimer's disease and vascular dementia.

NR:

description
PREDICTED: glutamate receptor ionotropic, NMDA 2A-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018293 True 1392 mRNA 0.53 16 6309369 6464857

Neighbor

gene id symbol gene type direction distance location
AMCG00018286 NA coding downstream 78362 6219973 ~ 6231007 (-)
AMCG00018292 nubp1,LOC107690260,LOC107590599 coding downstream 126557 6158280 ~ 6182812 (-)
AMCG00018289 NA coding downstream 153578 6128713 ~ 6155791 (-)
AMCG00018274 clec16a coding downstream 184537 6068303 ~ 6124832 (-)
AMCG00018263 NA coding downstream 423369 5881546 ~ 5886000 (-)
AMCG00018283 c2h16orf72,zgc:77849,LOC105900007,LOC107590581,LOC107738628,LOC107685917 coding upstream 120119 6584976 ~ 6593102 (-)
AMCG00018284 arhgdib,LOC108432841,LOC107590585,LOC107685923,LOC107568023,LOC106601960 coding upstream 189032 6653889 ~ 6675207 (-)
AMCG00018287 NA coding upstream 252027 6716884 ~ 6729381 (-)
AMCG00018288 clcn7,LOC106594444 coding upstream 272728 6737585 ~ 6754642 (-)
AMCG00018285 NA coding upstream 295127 6759984 ~ 6764079 (-)
G115395 NA non-coding downstream 90153 6217528 ~ 6219216 (-)
G115332 LOC100136012 non-coding downstream 262751 6046030 ~ 6046618 (-)
G115279 NA non-coding downstream 555347 5750092 ~ 5754022 (-)
G115278 NA non-coding downstream 559326 5749783 ~ 5750043 (-)
G115277 NA non-coding downstream 561010 5747458 ~ 5748359 (-)
G115534 NA non-coding upstream 536945 7001802 ~ 7002005 (-)
G115577 NA non-coding upstream 1269240 7734097 ~ 7734384 (-)
G115579 NA non-coding upstream 1277117 7741974 ~ 7742210 (-)
G115580 NA non-coding upstream 1277684 7742541 ~ 7742747 (-)
G115596 NA non-coding upstream 1377480 7842337 ~ 7842708 (-)
G115320 NA other downstream 358314 5950421 ~ 5951055 (-)
AMCG00018251 natd1,LOC107745813 other downstream 942615 5356846 ~ 5366754 (-)
G115183 NA other downstream 1004940 5300107 ~ 5304429 (-)
G115174 NA other downstream 1021496 5286386 ~ 5287873 (-)
AMCG00018220 NA other downstream 1657728 4646147 ~ 4651641 (-)
AMCG00018291 NA other upstream 145776 6610633 ~ 6652773 (-)
G115581 NA other upstream 1278361 7743218 ~ 7773892 (-)
AMCG00018344 NA other upstream 2177039 8641896 ~ 8648807 (-)
AMCG00018339 NA other upstream 2201880 8666737 ~ 8676808 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 2774955 9239812 ~ 9258202 (-)

Expression


Co-expression Network