AMCG00018295


Basic Information

Item Value
gene id AMCG00018295
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6785250 ~ 6790463 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018295
CGACACTTGTTCGGTCTAATGCAATCGCCATTTGTCCTAAAAGGGCTGCCGTACTTCAGCCTCACCGCTGCGGTATACGGCGAAACTCTATTGTGTGCCTCTTTGTAacagatatttttgtatttgttttgtttcgttaAACCAAAGGGATGTTGGGGTGACATTGAGGAATAAGAACACGATGAGTGATATCCGCCATTCGCTCCTGCGCCGAGATGCCCTGAGCGCTGCGAAGGAGGTCCTCTATCACCTGGACATCTACTTCAGCAGCCAGCTCCAGAACACAGCGGTGCCCATTGTGGACAAGGGAACCATTGAACTGGTGGAAGAGTTTGTGTTTCACGTTCCTAAAGATCGCAATGTTCAGCCAAAGAGGATGAGCTCCCTGCAGGAGCTGCAGTTACTGGAGATCATGTGCAGCTACTTCCAGGAGCAGAGCAAAGATGCAGTGCGTCAGATCATCTTCTCCGCTCTGTTCAGCCCTCAGGGAAACAAGGCCGACGACAACAGGATGGCCATGCTGGGGAAGCTGGTCTCCATGGCCGTGGCGGTCTGCAGGGTGCCGATCTTAGAGTGTGCAGCTTCGTGGCTGCAGAGAACCCATTCTATCTACTGTGTGAGGCTTGCCAAGGTCCTGGTTGATGATTACTGCAGCCTGGTGCCTGGATCAGTGCAGACCCTGAAACAGATCTTCAGTGCCAGCCCTCGCTTCTGCTGTCAGTTCATCACCGCAGTCACGGCACTCTATGACTTGTCTACAGaAGACCTGACCCCACCCCACGATCTGCTGGAGATGGTGGTCACCTGGATCTTTGATGACCCCCGACTGACCCTTATCACCTTCCTCAACACCCCCATTTCCGCCAATCTCCCACTGGGCTGCCTGGACCTCACCCCTGTGGTCGGCCTGGTGCGCTGGTGTGTCAAGTCCTCTCTGGCCTACAAGAGGAACAGGAAACCCTCGCTCACCAATGGCCACGCCAACAAACTCTCCAAAGAGCAAGTGGAGATTGACAGGGACAGGGACTCGCAGTCGCTCTACTCCAAGCTCCACCTGAGCGTCCTGCAGGTTCTCATGATTCTCCAGGTCCACTTGACTGAAAAAAACTTGTATGGACGCCTCGGGCTGCTCTTGTTCGAGCACGTGGCGCAGCTCGTTGAGGAGCTTGGCAGACTTGTGGACGAACTGAATCCACTCAATGCCACCAAAGAGACGGAGCTTTCTTTGGACCGGTTGGCGCAGGCCTTGCAGGTTGCTGTGGCGTCCGGAGCTCTTTTGTGCACCAGAGaggaCCTGAGATCGCTGTGCTCCAGGTTGCCCCATAACAACTTGCTTCAGCTGGTTCTGTCGGGCCCTGTGCAGCAGCCAGCTCCGCCTGCATTCCAGCCTGGATTTTACCCCCACATCCACACCCCTCCACTGGCCTACCCTGCTCATCCTGCCCGCCCTGCTCCTGCCGCACTCCCCACCCATCCTGTGCACCCCGCCCACAACGCACACCCCGTTCACAACGCACACCCAGTGCCGACTTTTCTACCAGGGATGGCCTTTTCTTATCGCCCGATTCGCTAGCAGCAGCACGTATCCATTTGattgcactgtatatatatctcTACAACCGTCTGCAGGCTGGATTAGCAGTACCAACCCTGATATTTGTTGTGCATCTATATCTTGCTTACCCCTGTGGACTGAGGTCCTTGGCAAAGGAAAGGTCAGAAAAGTTCAGCTTTAAAGGGCTGCTGTGTGAGGTTCCCTAACTTccatattaaatacttttttctagTATCATTAGGTAAAGGGAAAGTGGAATCCCACAGAGCGTTTCAAGAAACCATTTTCAAATTCATGGAAACTTGagttttttgttcattttctcgGGGGGAAAGATCCATCTGTTAACTTTAAATGTTGCAGGGATGCATGATGGCACAGACTTTTCATAAGCAAGACATATTGGATAGTAGGAGAATGGAGGGTTTATTCTTTGATATGTAATGCACAGTGGCTCCcaaattattttgtcattttttttgcatatacTTAAAAATATCTGGAGATTCATAACAATGCTTTGGGCTGTTAGCGAATGAGCATCAGTTTTGATGATATGCTAACTGATGACTTCAGTAGCTCTTTAAACTTATTCCTGAAACCTGTTAAAAATTGGACACAAGATAAAACCTCATTTAAATTCTGCATAAAAACTGATTCCACATACATACCAAAGAcgatgttttattataattgatgCTCTATGATATGGTAAACCTGTACCGCAGGGTCAATGAATTCTCAACAGTCAGAAATTCACTGCACTAAATCGGCATCTAAAGCACAATTTTTATTACATGAACATTGTTCATCGTCAGCAACATGATGTTCTCCACACTGGGAATGTAGAACATGGAAAATGttagttatatatacagtgcaaagATGGAGGTGGAAATGGTATGGACCAGAaatgatgtatacatttttcatagtttgttcaaaataaatgctaCTAATTGTATGACCGTAAATGTAAAacacctttttttgtatttgttgggCAGTTGTAATAAATTTTATATTCTAATta

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko04110 Cell cycle
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018295 True 2588 mRNA 0.48 7 6785250 6790463

Neighbor

gene id symbol gene type direction distance location
AMCG00018281 NA coding upstream 52756 6731610 ~ 6732494 (+)
AMCG00018282 NA coding upstream 81119 6688637 ~ 6704131 (+)
AMCG00018279 usp7 coding upstream 167632 6599598 ~ 6617618 (+)
AMCG00018278 grin2a,LOC107690256,LOC107733867 coding upstream 420010 6339451 ~ 6365240 (+)
AMCG00018276 grin2a,LOC107685916,LOC108413991,LOC107690256 coding upstream 475407 6306395 ~ 6309843 (+)
AMCG00018297 naa60 coding downstream 1591 6792054 ~ 6798225 (+)
AMCG00018296 carhsp1,LOC107733846,LOC107576530,LOC107590589 coding downstream 24971 6815434 ~ 6818771 (+)
AMCG00018294 NA coding downstream 37228 6827691 ~ 6828740 (+)
AMCG00018300 NA coding downstream 93472 6883935 ~ 6899668 (+)
AMCG00018305 NA coding downstream 947163 7737626 ~ 7746484 (+)
G115467 NA non-coding upstream 5204 6733707 ~ 6780046 (+)
G115481 NA non-coding upstream 11987 6772432 ~ 6773263 (+)
G115439 NA non-coding upstream 106897 6654122 ~ 6678353 (+)
G115441 arhgdib,LOC106606251,LOC107685923,LOC107590585 non-coding upstream 118027 6658533 ~ 6667223 (+)
G115419 NA non-coding upstream 165153 6618178 ~ 6620097 (+)
G115511 NA non-coding downstream 38625 6829088 ~ 6833312 (+)
G115514 NA non-coding downstream 47243 6837706 ~ 6838861 (+)
G115535 NA non-coding downstream 295111 7085574 ~ 7086966 (+)
G115560 NA non-coding downstream 930144 7720607 ~ 7720964 (+)
G115585 NA non-coding downstream 1092742 7883205 ~ 7890901 (+)
AMCG00018280 NA other upstream 37812 6710482 ~ 6747438 (+)
AMCG00018272 NA other upstream 624634 6155488 ~ 6160616 (+)
G115299 NA other upstream 834233 5949463 ~ 5951017 (+)
G115049 NA other upstream 2021345 4761518 ~ 4763905 (+)
AMCG00018216 telo2 other upstream 2181145 4594933 ~ 4604105 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other downstream 1103164 7893627 ~ 7894449 (+)
G115648 NA other downstream 1329315 8119778 ~ 8122171 (+)
G115789 NA other downstream 1902901 8693364 ~ 8694719 (+)
AMCG00018358 polr3k,rpc11 other downstream 2409194 9199657 ~ 9206776 (+)
AMCG00018360 f100a other downstream 2449348 9239811 ~ 9245234 (+)

Expression


Co-expression Network