AMCG00018298


Basic Information

Item Value
gene id AMCG00018298
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6780771 ~ 6783583 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018298
ATGCTGTGCAAGGCATTGTTTGTACTGGGGCTGGTGTTGGCATGTGTCGAAGTGGCCAAGTGTTCCTTGTTGATTGGGGCCTTTAATATCAAAGTCTTTGGGGACAAAAAAGCATCCAATGCCACTTTAGTTAACATAATTGTTGAAGTAGTGCACAGGTATGACATTGTGGTCATTCAGGAAGTGAGAGACAGTGACCTGTCTGCCACCACCAGCCTGATGCGGGACCTGAACAGGGACTCACCTTATGTATACCGGCATATAGTCAGTGAGCCGCTCGGCAGAAGCACCTACAAAGAAAGATACCTGTTTATCTACAGAGATGAACGGGTGTCTGTGGTCGAAAGCTTCCAGTATGACGATGGCTGTGAGTCCTGTGGGATGGACACCTTCAACCGAGAACCCTTTGTGCACACCTCCCCTGACAGCGCTGTGGTGGAAATCGACGCTCTCTACGACGTCGCTGCATATGTGCAGAACCACTGGAACACCGATAACATCCTGCTGTTGGGAGACTTCAATGCAGACTGTAACTATGTGCTGCCCTCTGATTGGGAGAAGATTCGGTTGCACACTGACTCCCAATACGCCTGGCTCCTGCCCAACAGCGTGGATACCACTGTCGGCAATACACACTGCGCTTACGACAGGATTGTTGCCAGTGGAATAGAAATGAAGAAAGCCATCATTCCTGGGTCCGCTAGAGTGTATAACTTCATGGTTGCTTTAAATCTGCAGTACCCCATGGTAAGACCGTGTTTTGTCTAA

Function

GO:

id name namespace
GO:0006308 DNA catabolic process biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0004519 endonuclease activity molecular_function
GO:0004536 deoxyribonuclease activity molecular_function

KEGG:

id description
K11994 DNASE1; deoxyribonuclease-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018298 True 768 mRNA 0.49 7 6780771 6783583

Neighbor

gene id symbol gene type direction distance location
AMCG00018290 NA coding downstream 3333 6776337 ~ 6777438 (-)
AMCG00018285 NA coding downstream 16692 6759984 ~ 6764079 (-)
AMCG00018288 clcn7,LOC106594444 coding downstream 26129 6737585 ~ 6754642 (-)
AMCG00018287 NA coding downstream 51390 6716884 ~ 6729381 (-)
AMCG00018284 arhgdib,LOC108432841,LOC107590585,LOC107685923,LOC107568023,LOC106601960 coding downstream 105564 6653889 ~ 6675207 (-)
AMCG00018299 NA coding upstream 38012 6821595 ~ 6826223 (-)
AMCG00018301 NA coding upstream 44036 6827619 ~ 6850794 (-)
AMCG00018304 NA coding upstream 83329 6866912 ~ 6876178 (-)
AMCG00018302 LOC107568067,LOC107685930,LOC107733849 coding upstream 350315 7133898 ~ 7136847 (-)
AMCG00018303 rbfox1,LOC107568067 coding upstream 369508 7153091 ~ 7160634 (-)
G115395 NA non-coding downstream 561555 6217528 ~ 6219216 (-)
G115332 LOC100136012 non-coding downstream 734153 6046030 ~ 6046618 (-)
G115279 NA non-coding downstream 1026749 5750092 ~ 5754022 (-)
G115278 NA non-coding downstream 1030728 5749783 ~ 5750043 (-)
G115277 NA non-coding downstream 1032412 5747458 ~ 5748359 (-)
G115534 NA non-coding upstream 218219 7001802 ~ 7002005 (-)
G115577 NA non-coding upstream 950514 7734097 ~ 7734384 (-)
G115579 NA non-coding upstream 958391 7741974 ~ 7742210 (-)
G115580 NA non-coding upstream 958958 7742541 ~ 7742747 (-)
G115596 NA non-coding upstream 1058754 7842337 ~ 7842708 (-)
AMCG00018291 NA other downstream 127998 6610633 ~ 6652773 (-)
G115320 NA other downstream 829716 5950421 ~ 5951055 (-)
AMCG00018251 natd1,LOC107745813 other downstream 1414017 5356846 ~ 5366754 (-)
G115183 NA other downstream 1476342 5300107 ~ 5304429 (-)
G115174 NA other downstream 1492898 5286386 ~ 5287873 (-)
G115581 NA other upstream 959635 7743218 ~ 7773892 (-)
AMCG00018344 NA other upstream 1858313 8641896 ~ 8648807 (-)
AMCG00018339 NA other upstream 1883154 8666737 ~ 8676808 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 2456229 9239812 ~ 9258202 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 2990723 9774306 ~ 9779545 (-)

Expression


Co-expression Network