AMCG00018299


Basic Information

Item Value
gene id AMCG00018299
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6821595 ~ 6826223 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018299
ATGGCGCAGTCAGCAGTGGATACGACAACTCTGTGCTTGTTTGATGTCGATGGGACTCTAACTGCTGCTAGACAAAGCATCACTCCCGACATGGACGAGTTCCTCCAGCGGCTGAAGAAGAAGGTGCGGGTCGGCGTGAAAGTGGATTATGTGTTTGCTGAGAACGGATTAGTCGCCTACAAAGAGGGTAGACTGTTATCTGTACAGagtATTCGAGCACACTTAGGAGAGGAATTGCTAcaagattttattaatttctgtttgaATTACATGTCAAAGATTAAACTGCCCAAAAAAAGGGGCACTTTTATAGAGTTTCGTAACGGTATGCTGAACGTGTGTCCGGTGGGGAGAAGCTGTAGCCAGGAAGAGCGCATGGAGTTCTTTGAGTTTGATCAGAAGGAGTTTCGTGGAAGAGGGCTGGTGTTCTCCATAGGTGGACAGATCAGCATCGACATTTTCCCAGAAGGCTGGGATAAAAGATACTGCCTGGGCCTGCTGGAGCAAGACGGCTATGAGACGATTCATTTCTTTGGAGACAAAACCAAACCCGGGGGCAATGACTATGAGATCTATACAGACCCTAGGACCGTCGGCCATGAGGTGACCTCGCCAGCGGACACCAAGCGCATGTGCGAGGAGCTCTTCTTCAAATGA

Function

GO:

id name namespace
GO:0019307 mannose biosynthetic process biological_process
GO:0006487 protein N-linked glycosylation biological_process
GO:0090171 chondrocyte morphogenesis biological_process
GO:0022008 neurogenesis biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004615 phosphomannomutase activity molecular_function

KEGG:

id description
K17497 PMM; phosphomannomutase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018299 True 657 mRNA 0.49 8 6821595 6826223

Neighbor

gene id symbol gene type direction distance location
AMCG00018298 NA coding downstream 38012 6780771 ~ 6783583 (-)
AMCG00018290 NA coding downstream 44157 6776337 ~ 6777438 (-)
AMCG00018285 NA coding downstream 57516 6759984 ~ 6764079 (-)
AMCG00018288 clcn7,LOC106594444 coding downstream 66953 6737585 ~ 6754642 (-)
AMCG00018287 NA coding downstream 92214 6716884 ~ 6729381 (-)
AMCG00018301 NA coding upstream 1396 6827619 ~ 6850794 (-)
AMCG00018304 NA coding upstream 40689 6866912 ~ 6876178 (-)
AMCG00018302 LOC107568067,LOC107685930,LOC107733849 coding upstream 307675 7133898 ~ 7136847 (-)
AMCG00018303 rbfox1,LOC107568067 coding upstream 326868 7153091 ~ 7160634 (-)
AMCG00018307 NA coding upstream 895041 7721264 ~ 7743678 (-)
G115395 NA non-coding downstream 602379 6217528 ~ 6219216 (-)
G115332 LOC100136012 non-coding downstream 774977 6046030 ~ 6046618 (-)
G115279 NA non-coding downstream 1067573 5750092 ~ 5754022 (-)
G115278 NA non-coding downstream 1071552 5749783 ~ 5750043 (-)
G115277 NA non-coding downstream 1073236 5747458 ~ 5748359 (-)
G115534 NA non-coding upstream 175579 7001802 ~ 7002005 (-)
G115577 NA non-coding upstream 907874 7734097 ~ 7734384 (-)
G115579 NA non-coding upstream 915751 7741974 ~ 7742210 (-)
G115580 NA non-coding upstream 916318 7742541 ~ 7742747 (-)
G115596 NA non-coding upstream 1016114 7842337 ~ 7842708 (-)
AMCG00018291 NA other downstream 168822 6610633 ~ 6652773 (-)
G115320 NA other downstream 870540 5950421 ~ 5951055 (-)
AMCG00018251 natd1,LOC107745813 other downstream 1454841 5356846 ~ 5366754 (-)
G115183 NA other downstream 1517166 5300107 ~ 5304429 (-)
G115174 NA other downstream 1533722 5286386 ~ 5287873 (-)
G115581 NA other upstream 916995 7743218 ~ 7773892 (-)
AMCG00018344 NA other upstream 1815673 8641896 ~ 8648807 (-)
AMCG00018339 NA other upstream 1840514 8666737 ~ 8676808 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 2413589 9239812 ~ 9258202 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 2948083 9774306 ~ 9779545 (-)

Expression


Co-expression Network