AMCG00018303 (rbfox1,LOC107568067)


Basic Information

Item Value
gene id AMCG00018303
gene name rbfox1,LOC107568067
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 7153091 ~ 7160634 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018303
ATGGGGCGAGGACTGccaaggaaagagagagagagagagagagacgggagtGGGGGGCGGAATAAAGAGTCAAGGAAGCAAGAAACGAGAGAGTCCCATCTGGATGAGGCAGATGCTGCAGGGCCTGGGACTAGAGCAGCTGCTAAGTTTATGGAGGAAAAAGGGAACAAGATGGTGCAGCAGGGTAATCAGGACGCCACAGCACCTCCTGAAACGATGGCACAGCCTTACGCTTCAGCCCAGTTTGCGCCGCCTCAGAATGGAATCCCTGCCGAATACACGgcccctcacccccaccccGCGCCAGACTACACAGGCCAGACCACAGTCCCCGAGCACACACTAAACATGTACCCTCCCGCGCAGACACACAGCGAACAGAGCGGCCCTGACACAAATGCACAGACCGTCTCCGGGACCGCCACAGCCGGCAACCCTCAGCCTGCGAGGGCAGACCTGCACTCAAGTTGGGGGCCGTGCCTGGAGAGGTCAGTCCTGCCAAGCCGCTGGCCAGAGCTGAGGGAGAATAAAACGCTGCTAATTAAAGGCTTTGCGTGA

Function

symbol description
rbfox1 Predicted to enable mRNA binding activity. Acts upstream of or within heart contraction; hypothalamus development; and regulation of alternative mRNA splicing, via spliceosome. Predicted to be active in cytoplasm and nucleus. Is expressed in digestive system; heart; nervous system; neural keel; and skeletal muscle. Orthologous to human RBFOX1 (RNA binding fox-1 homolog 1).

NR:

description
PREDICTED: RNA binding protein fox-1 homolog 1-like isoform X2

GO:

id name namespace
GO:0021854 hypothalamus development biological_process
GO:0006397 mRNA processing biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018303 True 558 mRNA 0.59 4 7153091 7160634

Neighbor

gene id symbol gene type direction distance location
AMCG00018302 LOC107568067,LOC107685930,LOC107733849 coding downstream 16244 7133898 ~ 7136847 (-)
AMCG00018304 NA coding downstream 276913 6866912 ~ 6876178 (-)
AMCG00018301 NA coding downstream 302297 6827619 ~ 6850794 (-)
AMCG00018299 NA coding downstream 326868 6821595 ~ 6826223 (-)
AMCG00018298 NA coding downstream 369508 6780771 ~ 6783583 (-)
AMCG00018307 NA coding upstream 560630 7721264 ~ 7743678 (-)
AMCG00018306 NA coding upstream 584462 7745096 ~ 7763759 (-)
AMCG00018310 fbxl16,LOC107568165,LOC107685932,LOC107738613,LOC107568127,LOC107690242,LOC107733860 coding upstream 722573 7883207 ~ 7894569 (-)
AMCG00018311 gsg1l,LOC107738642,LOC107690243,LOC107685933,LOC103366699 coding upstream 783483 7944117 ~ 7972869 (-)
AMCG00018314 NA coding upstream 879876 8040510 ~ 8045893 (-)
G115534 NA non-coding downstream 151086 7001802 ~ 7002005 (-)
G115395 NA non-coding downstream 933875 6217528 ~ 6219216 (-)
G115332 LOC100136012 non-coding downstream 1106473 6046030 ~ 6046618 (-)
G115279 NA non-coding downstream 1399069 5750092 ~ 5754022 (-)
G115278 NA non-coding downstream 1403048 5749783 ~ 5750043 (-)
G115577 NA non-coding upstream 573463 7734097 ~ 7734384 (-)
G115579 NA non-coding upstream 581340 7741974 ~ 7742210 (-)
G115580 NA non-coding upstream 581907 7742541 ~ 7742747 (-)
G115596 NA non-coding upstream 681703 7842337 ~ 7842708 (-)
G115599 sept12,LOC107568113,LOC107690244,LOC107733855 non-coding upstream 699682 7860316 ~ 7868626 (-)
AMCG00018291 NA other downstream 500318 6610633 ~ 6652773 (-)
G115320 NA other downstream 1202036 5950421 ~ 5951055 (-)
AMCG00018251 natd1,LOC107745813 other downstream 1786337 5356846 ~ 5366754 (-)
G115183 NA other downstream 1848662 5300107 ~ 5304429 (-)
G115174 NA other downstream 1865218 5286386 ~ 5287873 (-)
G115581 NA other upstream 582584 7743218 ~ 7773892 (-)
AMCG00018344 NA other upstream 1481262 8641896 ~ 8648807 (-)
AMCG00018339 NA other upstream 1506103 8666737 ~ 8676808 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 2079178 9239812 ~ 9258202 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 2613672 9774306 ~ 9779545 (-)

Expression


Co-expression Network