AMCG00018306


Basic Information

Item Value
gene id AMCG00018306
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 7745096 ~ 7763759 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018306
ATGTTCATGTCTTCAGCGGAGGAGCGAAGTTTCATGCAGTTCCAACGTGCGAATTCCTCAGCTCTGGTTATTGActccccatccctctccctccagtACAGGATCGGGCAACTGTACACCATCAGCAAACACAGCCACGAGGAGAGCGACAAAGGAGAGGGGGTGGAGGTGGTACGAAACGAGCCGCACATTGACCCGGCGCACGGGGAAGGCCAGTTCACGGAGAAGAGAGTTCACTTGTCCAGCTTCCAAGCTGGGCTCGTGCCGTGGTACCTCGGATATTCTACATCACAGAGAAAGCCTGGAATTACTATCCATATACAATTACAGTGCTCTTTTTTGCCCAAATTCTCCATCCATATAGAGACAAAATATGAAGACAATTGTGGGGATAATGAAAACATTTTCAATGTGGACAAAAATAACTCGGACCCAGAGGTGTGCTTTCTGGATATTGCCTATGATGACATCCCGGATAGACATTACAAAAGCTCAGAGGATCTCCGGTGCTTTGCCTCGGTAAAAACGGGAAGAGGCCCTTTAAAAGAAGGCTGGAGAGAGAACACCAAGCCAGTGATGTGCTCTTACAAGCTAGTGGGAGTCAAGTTCGAGGTGTGGGGTCTGCAGACAAGGGTGGAGCAGTTTGTACATAAGGTCATCAGAGATATCTTGTTGGTGGGGCACCGGCAGGCCTTCGCTTGGGTGGATGAGTGGTACAATATGTCCATGGAAGAGGTCCGGGAGTACGAGAGAGAGACGCAAGAAGCCACCAATGAGAAAATTGGCCTGATGGCGCCCACCATCTCCATCCACGAGGTCGCCCAGCCACCCACCACACGCAGCGCCCCGGCCAGCGCACCTTCCACCCCTGTGAACGGAGACCCCCCGGACTTCCTCAGCGTTCCCAAGGATCGGCCCCGAAAGAAATCCGCCCCAGAGACACTCACCCTCCCTCAGCTGCGAGAACGCGCCCTTCCCAAATAG

Function

GO:

id name namespace
GO:0061982 meiosis I cell cycle process biological_process
GO:0051321 meiotic cell cycle biological_process
GO:1903046 meiotic cell cycle process biological_process
GO:0006259 DNA metabolic process biological_process

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018306 True 984 mRNA 0.53 8 7745096 7763759

Neighbor

gene id symbol gene type direction distance location
AMCG00018307 NA coding downstream 1418 7721264 ~ 7743678 (-)
AMCG00018303 rbfox1,LOC107568067 coding downstream 584462 7153091 ~ 7160634 (-)
AMCG00018302 LOC107568067,LOC107685930,LOC107733849 coding downstream 608249 7133898 ~ 7136847 (-)
AMCG00018304 NA coding downstream 868918 6866912 ~ 6876178 (-)
AMCG00018301 NA coding downstream 894302 6827619 ~ 6850794 (-)
AMCG00018310 fbxl16,LOC107568165,LOC107685932,LOC107738613,LOC107568127,LOC107690242,LOC107733860 coding upstream 119448 7883207 ~ 7894569 (-)
AMCG00018311 gsg1l,LOC107738642,LOC107690243,LOC107685933,LOC103366699 coding upstream 180358 7944117 ~ 7972869 (-)
AMCG00018314 NA coding upstream 276751 8040510 ~ 8045893 (-)
AMCG00018315 NA coding upstream 304442 8068201 ~ 8073947 (-)
AMCG00018316 NA coding upstream 315476 8079235 ~ 8081255 (-)
G115580 NA non-coding downstream 2349 7742541 ~ 7742747 (-)
G115579 NA non-coding downstream 2886 7741974 ~ 7742210 (-)
G115577 NA non-coding downstream 10712 7734097 ~ 7734384 (-)
G115534 NA non-coding downstream 743091 7001802 ~ 7002005 (-)
G115395 NA non-coding downstream 1525880 6217528 ~ 6219216 (-)
G115596 NA non-coding upstream 78578 7842337 ~ 7842708 (-)
G115599 sept12,LOC107568113,LOC107690244,LOC107733855 non-coding upstream 96557 7860316 ~ 7868626 (-)
G115732 NA non-coding upstream 666367 8430126 ~ 8433570 (-)
G115807 NA non-coding upstream 753575 8517334 ~ 8519203 (-)
G115874 NA non-coding upstream 1098114 8861873 ~ 8862377 (-)
AMCG00018291 NA other downstream 1092323 6610633 ~ 6652773 (-)
G115320 NA other downstream 1794041 5950421 ~ 5951055 (-)
AMCG00018251 natd1,LOC107745813 other downstream 2378342 5356846 ~ 5366754 (-)
G115183 NA other downstream 2440667 5300107 ~ 5304429 (-)
G115174 NA other downstream 2457223 5286386 ~ 5287873 (-)
AMCG00018344 NA other upstream 878137 8641896 ~ 8648807 (-)
AMCG00018339 NA other upstream 902978 8666737 ~ 8676808 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 1476053 9239812 ~ 9258202 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 2010547 9774306 ~ 9779545 (-)
G116165 NA other upstream 2155287 9919046 ~ 9924582 (-)

Expression


Co-expression Network