AMCG00018310 (fbxl16,LOC107568165,LOC107685932,LOC107738613,LOC107568127,LOC107690242,LOC107733860)


Basic Information

Item Value
gene id AMCG00018310
gene name fbxl16,LOC107568165,LOC107685932,LOC107738613,LOC107568127,LOC107690242,LOC107733860
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 7883207 ~ 7894569 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018310
GGTTTTGTTATGGAAGCTTGAACCTGTTCAACTGGTATTACGTCCTTAATTCTTGTTTTGCTGTGATGTGACCACTCTGTGTCTCCTGtgtccttctccctctctctctgtccagctCTAAATGCTGAAGATGTCCACTCCCAACGACCTCAAGTCTCCCTGCGTGCCAAGGAACGGCTTGGTCAAGCTTCCCCCACAGCCCAATGGCCTGGGCTCTGCCAGCATCACAAAAGGGACACCGGCAGCCAAGAACCGCCTGTGTCAGTCCTCCTCGGTGCCCACCATCCTGCCTCCACCCAGCCTGCCCTACCACATGGAGCCCCTGCCCACCGCCGCGTCCCTGCTGGGCCCCGACCCGGACGCCGGCTCCCCCACATCCGACCAGCCCCCCCGGAGAAAGCTCTCCAAGCCCTCCTTGGAGAGGCAGCTGGTGCTGGATGAGAAGGTCCTGAATCGGCTGCTGTGGTACTTCACCACCACAGAGAAGTGCGTTCTGGCGCAGGTGTGCAAGACCTGGCGGAAGGTGCTCTACCAGGCCAAGTTCTGGGAAGGGGTGACGCCTATTCTGCATGCCAAGGAACTCTACAGCATCCTGCCCAATGGGGAGAAGGAGTTTGTCAGCCTACAGGCCTTTGCGCTGAGGGGATTCCATGCATTCTGCCTGGTGGGCGTCTCCGACCTGGACATTTGCGAGTTCATCGACAACTACCCTCTGTCCAAGAAGGGTGTAAAGTCAGTCAGTCTCAAGAGGTCCACCATCACAGATGCTGGTTTAGAggtGATGCTGGAGCAGATGCAGGGCCTGGTGCACCTGGAGCTGTCGGGCTGCAACGACTTCACGGAGGCGGGGCTCTGGTCCAGCCTGAACGCGCGGCTCACCTCGCTCAGCGTCAGCGACTGCATCAACGTGGCTGACGACGCCATCGCCGCCATTTCCCAGCTGCTGCCCAACTTGTCGGAGCTGAGCCTGCAGGCCTACCACGTGACGGACACGGCCATGGCCTACTTCACCGCCAAGCAGGGCTACACCACCCACACGCTGCGGCTGCACTCCTGCTGGGAGATCACCAATCACGGCGTGGTCAACATGGTGCACAGCCTGCCCAACCTCACCGCCCTGAGCCTGTCGGGCTGCTCCAAGATCACGGACGACGGGGTGGAGCTGGTGGCAGAGAACCTGAGGAAACTGCGCAGCCTGGACCTGTCCTGGTGCCCCCGGATCACCGACATGGCCCTGGAGTACATCGCCTGTGACCTGCACAAGCTGGAGGAGCTCGTGTGTGAGGATCACCGATACAGGCCTGGGGTACCTCTCCACCATGTCTTCTCTCCGCAGCCTCTACCTGAGGTGCAAGATTTCGGATTGCAGCACCTGTTCGGCATGAGAAGTTTACGCCTCTTGTCCCTTGCAGGCTGCCCTCTGCTCACCACCACGGGGCTCTCTGGTCTCATTCAGTTGCAGGACCTGGAGGAGCTAGAGCTCACCAACTGTCCCGGGGCCACAGCTGAGCTCTTCAAGTACTATTCGCAGCACCTGCCTCGCTGCATGGTCATCGAGTAGCCAGAGCAAAGAGGTGACATCGCCACGTCACCAAAACCTTCTCCTCCAGTCAAAACCGAAAGCTGACCAACCAACTTCATTCAGAACCTGAGGGAgaaatcaacaacaaacaacaaaaaaaagggaaaacaaaagcaaggcTGAAAGAATTTAACGGAAGGAAGGAACGACATACAGGAAGGaaggacaaataaaaaatgagcgGGGGCTTGATTAACTGAAATAGACAAAATGGCAAAACTTTTAGCAGGAAGGAATatacagaaaacatgaaaaatctcaaaaaaaacacacacatatatgaaatatttaaaaaaacgaaaatcataaaaaaaaaaaagaactgaaaTTTCGCTTCGGTGTGACATCATTCCATGTTTTTTCAAAGGTTGTGTGTACAGGTTCCTCCAGCCATTTTGCGTACTTGTACCAGGCGTATGGCGGGAAGTGGGGAGAAGGCGAGGCAGCGAGGGGAGAAGACAGAAGCAGCAGGGGCCCGGTTTCTTTGCGAACGTGCTCGGCACATAGCGATGGCTGCTGTCTCGCGTAATTCCAGCTCCCTTTCAGCCCCTTGTGGTCTTCAAGCTGGTTTTTCCATGTCTGTGTCTTaacgggggggaaaaaaagaaaatagaaatatttaaagaaaacagctatgtagaattattttatttttgtctgagcTGCACGCTTACCCGCTTGTTGTCAtgctgatttttttgttttgtttgaagtattattttttcaatatgatttttaacgaaggaaaaaaaaaatgtttgtggtAAGCAATCAAGATATTCAGACTCCTCGAAAGAGGGGAAGCCTCCGTGACAAAAAGGTACAACTACCCTAATCgtaacatgtaaaatataataaaagttgCTAACATCGTACGAGTGTAAGACACTGATATGCTGTGAAGGAGTGGTTTGGCTTTCAGGCTTTGGTTTCGAAAATGGCTCTCTTTGGGGGTGTGGTGGGCTTGCGGTGGGGAAGGGGTTCAATTCAGAAGCGACTCCGCTGTACATACATTAGGTAATCTGCTCAGCTTggccttttcaaaatatttatttcattttaatagagTTTCTTGAGGTCAGACAGTGCGCAGGTTTGAGAGGTGAAACTGTCCTGCTCTACACGCTTCCCTATCGTTCCGTACAGAAGACAAAGCTAAGGAGTTCGGAGGTGGGAGACATATTATAGATCAGAAGATATGCCCCCTTTATTGTGACCCTTTAGACGTTGTATCGGGGTGACCAGAGATGCCCACGGTTGTCTTTAGAGACATAAACACATTGTATTGTACAGATTGGTACACGAATCTCATACTGttcatgcatacatatacatgtgtttgtgtgtgtatatgggATGAGCTTGGATGGGATGAGGGATGTGcagaaatgtacacacacaaaaacaaggaTCAAGGGAGTTATTTGCTTTTGCTCGAACACAACTCTGGAGTCGGTACAGACGCAGAGCGGCTCACAGTGAACAGTCACAGCACCCCCCAGGCAGCGCGGCTCGGGCCTCTCGGGCTGGCAGGAGATGCCAGGAATAGCTGATGTTAATGCCAACCCCCCAGCTTTAAATGAAGGGAGTCTACTTTTCATTTcctatacttttgttttctataaatattttgccttttcagtttaatttctgtttatttttctggttcTGGAGGAAGACATCTCTCTCTTGGTTTTCCCTCCATCTCTTGTTGCCGTCTGATTTTACACAGCGCCACAGttttctctgctctctgctctcctcCCCTTAATGCCTGGCACCGTTGCTGATTGGGTGTTGGTGGCTACTTGAGCCACAAGCCACCCCCACTTTCGTTTCGGCAGCATTTCGGAACAGCCGTGTTTTCCAGGGCTGGTTTTCTGGAATATTGAAGATTGGGTTAGTTTCTCGCTTTTCCTCTCTAGTGATCCGAGTCGGTAGTAAACGGAGGTGGCCTTCAATACCTGGGGATGCTGGTTCACACCACAAAAAACACCAGACGTTTTGCAGCGGGTGCTTCAGGTTGTATGATTAAGGTTATTGCGATGACTTGTTGTGTCTGCCAGAGCCAGGAAAGGCAATATTTAAATGTCCTTTATAATCAGTGTCAGTGTGACAATCAAGTGATCAAATAACAATGTATATAACTCCTTATAGAAAACCAACAGCCCGCAAAAATGATCTCCACCTTCGTGTGGCATATCATAGGCAGCTCCAATGAACTAACGACCCCtatcagaattaaaaacacCTGGAGAGCACGTCTGTCCAGCTGTGGAGTACATGCCTGCCGTGAAAGGCGCATGATTAATCTTCAGTCGTTTGGCACTGCGGATGTGCATGCTAACCTTCGACTATATAGTTCGATGTACTGAATTTGTGTCTATGCCGTAGAATACAGATAGAACTCTAAATAACTACTGATGTAACACTGTGCATTTTCCACCTTCAAGCCAAAAAGGACAAAGTGAAAGGTCGcccgtttttgtttttcctctcctgTTGCCATGTTAAGGATACATTATGTAAGACCGATGGGactctgtactgcactgtatgaCCTCGTTTGCAGGCCCACTGTCTTCAGCGATGCAGTGTAGGAACCGGGGGAAAGAAGTGGGTGGAAATATTCTCAAAAAATTGACAGAAGGGATAGGGAAATCAACTGCATTATGTATTATGCTATTATTCACACAAAAGTGGATCTTTGTAAAGTGAATATACAGTAAAACCATGCAATAGATCACGTATTTACCATGGCAGTGAGGAGCCATGAGATGTTGCTCGGGTTTGGAGTCTCCAGCACCGCAGTAGATCTGGATTTGCTGCTCTAACTGCTAGGGTACGTTGGAGGCCTGTCAGGTGAGGTTTGGCGATCGATGTAAAGAGAGGTCTGAGCAGAACACAGCTAAGGAAGCGAGCGGACGCAGGGTGCCGATGGGTTCAATCGGTCGAACTTCCTCCTACGGTGTATGTCCTCGGGCGCGCCACGTTTTACACACCGGAGCTGTGGTAGACCGGGTGGGTAGTGAGCAGATCCTTCAGCCAGAGATTTCGATTCGATCTGAGTAGCCTGTTGGCATCAAAGCTAGGTGACGATGTGACtgcatatttatgaatttattattttatttagacatgtatttatttgttttgtttatttatttatttatgtgttttttgtatggGGGAAAAGCGATAGGGAATCTTACTAAGCTGGGTTTTGTGTCTTAAAGCTAGTTTACAGCAGAATAAAAGGGGAGGAATTCAAAGAGgaggtatttgttttgttgttgttgggtttttatttattttgagctCTGGCTCTCTGAGAAGCCCCTGTAACGCTGCACAATCCAACGTTGCCATCTGTTGAGTCAGCTGAACCATTTGCAGACGCAGCGATGTTTACAATTAAAGCAACTTtggtgctttttttgtttcttgggcCTGTGGTATCTCAGGAGGACAGGAATTAACTCGGGGATTTGTAGATGACAGGAATGCCAGCAGGAGCGAGGCTGGATTTGCTCCGACTTATTTCCCCCacttagaaagaaaacaaaatgtcgCTCAGTAACAGTAATGCAATGTGCAGAATACAGCCTGTTCTAGTATTGATATGTATTTGGTATAACTGCATAACATTGCACTGTGCACAACATATTATATATGACAATACTACAGTACTTGGTCTCTTAGGTTGGTTAGTGCTGAACAATATATCAGAGGCTGGATTGTGGATTCATAATGATGTTCCTGTCATTCCTGTAGGGAAGCCCGTATTGTATGTTTCAGGAGCACGGATCAATCTTTTCAGGCGATCCGTTAGGAACGATTGTCTCCCCACCCTGTCTGAAATAGACAACCCTGGCACTACCTGTACTGCAGTATGTATGCAATACCACTGggtttaatttactgtaaacaGAGAAATGGGGAGCCACTGAGG

Function

symbol description
fbxl16 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human FBXL16 (F-box and leucine rich repeat protein 16).

NR:

description
PREDICTED: F-box/LRR-repeat protein 16

GO: NA

KEGG:

id description
K10282 FBXL16; F-box and leucine-rich repeat protein 16

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018310 True 5534 mRNA 0.48 5 7883207 7894569

Neighbor

gene id symbol gene type direction distance location
AMCG00018306 NA coding downstream 119448 7745096 ~ 7763759 (-)
AMCG00018307 NA coding downstream 139529 7721264 ~ 7743678 (-)
AMCG00018303 rbfox1,LOC107568067 coding downstream 722573 7153091 ~ 7160634 (-)
AMCG00018302 LOC107568067,LOC107685930,LOC107733849 coding downstream 746360 7133898 ~ 7136847 (-)
AMCG00018304 NA coding downstream 1007029 6866912 ~ 6876178 (-)
AMCG00018311 gsg1l,LOC107738642,LOC107690243,LOC107685933,LOC103366699 coding upstream 49548 7944117 ~ 7972869 (-)
AMCG00018314 NA coding upstream 145941 8040510 ~ 8045893 (-)
AMCG00018315 NA coding upstream 173632 8068201 ~ 8073947 (-)
AMCG00018316 NA coding upstream 184666 8079235 ~ 8081255 (-)
AMCG00018322 NA coding upstream 225419 8119988 ~ 8122196 (-)
G115599 sept12,LOC107568113,LOC107690244,LOC107733855 non-coding downstream 14581 7860316 ~ 7868626 (-)
G115596 NA non-coding downstream 40499 7842337 ~ 7842708 (-)
G115580 NA non-coding downstream 140460 7742541 ~ 7742747 (-)
G115579 NA non-coding downstream 140997 7741974 ~ 7742210 (-)
G115577 NA non-coding downstream 148823 7734097 ~ 7734384 (-)
G115732 NA non-coding upstream 535557 8430126 ~ 8433570 (-)
G115807 NA non-coding upstream 622765 8517334 ~ 8519203 (-)
G115874 NA non-coding upstream 967304 8861873 ~ 8862377 (-)
G115949 NA non-coding upstream 1306231 9200800 ~ 9215817 (-)
G116058 NA non-coding upstream 1586341 9480910 ~ 9482152 (-)
G115581 NA other downstream 109315 7743218 ~ 7773892 (-)
AMCG00018291 NA other downstream 1230434 6610633 ~ 6652773 (-)
G115320 NA other downstream 1932152 5950421 ~ 5951055 (-)
AMCG00018251 natd1,LOC107745813 other downstream 2516453 5356846 ~ 5366754 (-)
G115183 NA other downstream 2578778 5300107 ~ 5304429 (-)
AMCG00018344 NA other upstream 747327 8641896 ~ 8648807 (-)
AMCG00018339 NA other upstream 772168 8666737 ~ 8676808 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 1345243 9239812 ~ 9258202 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 1879737 9774306 ~ 9779545 (-)
G116165 NA other upstream 2024477 9919046 ~ 9924582 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026396 fbxl16 coding NC_007114.7 CM002887.2 28634467 ~ 28665291 (-)
grasscarp (Ctenopharyngodon idella) G273766 NA non-coding CI01000069 null 1517658 ~ 1541835 (+)