AMCG00018315


Basic Information

Item Value
gene id AMCG00018315
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8068201 ~ 8073947 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018315
ATGAAGAGCCTTCAGCTGGCTGCCCTCACGGCTGTCCTCTCTGCCACCATCCTTGCGTCCCACCAAGAGGTGATCGAGGATGTCCTCAGCAGTCTGGGCAGGGCGACACTGTTCTTTGAGACCCAGGTCAAGAACATCAACTTGGATGGAGTGGTTGGATACCGCATTCTCAATGACCCAGGAAGCGCAATCCAGGTCTCCAGAGCACTGAGCCTGGCCAGGAGATTGGATTACATCATCACGCAGTCAATCAACGCACTCCAGAACAGCGATCCGAAATACTACAGAGaGTTTGAGCCTTTGCTGGAGTCCAACTTTTGGACCGTGCCCCATGTGTGGAACAACACAGACCCAGCTCTGGCCTATTCCACCTTCAGAGCCATGGAGTGCTATGATGAGCAGCTCAGTGACAAGTGTATGACCCTCTTACTGGGAACATGGAAAGACAACGGCACTCCTTGCATAGTGACAAAGTCGTGCAGGGATATGATGACGAGGTTTGGATGTCCCAAttactccctctctcaccagcTGCTGTACTTCATGGTGGGGAGAATGAAAGGATGCTCCAACCTCCTGCAAGGGGAGCGCAGGGAGGCGCGTGCGAACCTGACCGCCCGTGACTACGAGAAGATCTTCTGCTCCAACATGATGAAGAGCAATGTGGAGTTCGAGAAGGACGGCTACCCGGTGCAGACCAGGGATATCTTCATAGAGAACATAATGCTGTGTGGCATGGCTGGCTTTGCGGATTTCTACAAATCTAGTTGGCTGAGGAACATCCTGATTTGGCAAGACCCAGACGAGGGATGTTTTGGCAAAGACGAGGAGGACCACACACAAGCGCAGGACAGAGGTGTTCTGGAAGCACTACAGCTTCACAAACGAgtgaagaggagagaaaaaaccCTGAAAGATGGGTGTTCGAGTCACATGACCGGAGTCGCCGTGAGCGCGCTGGGTGGATACCTGAACTACTACTTGACGGAACAGGACATCACAAAGAGACCACTGACGTTCTGA

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018315 True 1023 mRNA 0.53 8 8068201 8073947

Neighbor

gene id symbol gene type direction distance location
AMCG00018314 NA coding downstream 22308 8040510 ~ 8045893 (-)
AMCG00018311 gsg1l,LOC107738642,LOC107690243,LOC107685933,LOC103366699 coding downstream 95332 7944117 ~ 7972869 (-)
AMCG00018310 fbxl16,LOC107568165,LOC107685932,LOC107738613,LOC107568127,LOC107690242,LOC107733860 coding downstream 173632 7883207 ~ 7894569 (-)
AMCG00018306 NA coding downstream 304442 7745096 ~ 7763759 (-)
AMCG00018307 NA coding downstream 324523 7721264 ~ 7743678 (-)
AMCG00018316 NA coding upstream 5288 8079235 ~ 8081255 (-)
AMCG00018322 NA coding upstream 46041 8119988 ~ 8122196 (-)
AMCG00018323 NA coding upstream 49371 8123318 ~ 8140246 (-)
AMCG00018326 arl6ip1,LOC107658451 coding upstream 269183 8343130 ~ 8360156 (-)
AMCG00018330 smg1,LOC107729485,LOC107564004 coding upstream 289426 8363373 ~ 8391140 (-)
G115599 sept12,LOC107568113,LOC107690244,LOC107733855 non-coding downstream 199575 7860316 ~ 7868626 (-)
G115596 NA non-coding downstream 225493 7842337 ~ 7842708 (-)
G115580 NA non-coding downstream 325454 7742541 ~ 7742747 (-)
G115579 NA non-coding downstream 325991 7741974 ~ 7742210 (-)
G115577 NA non-coding downstream 333817 7734097 ~ 7734384 (-)
G115732 NA non-coding upstream 356179 8430126 ~ 8433570 (-)
G115807 NA non-coding upstream 443387 8517334 ~ 8519203 (-)
G115874 NA non-coding upstream 787926 8861873 ~ 8862377 (-)
G115949 NA non-coding upstream 1126853 9200800 ~ 9215817 (-)
G116058 NA non-coding upstream 1406963 9480910 ~ 9482152 (-)
G115581 NA other downstream 294309 7743218 ~ 7773892 (-)
AMCG00018291 NA other downstream 1415428 6610633 ~ 6652773 (-)
G115320 NA other downstream 2117146 5950421 ~ 5951055 (-)
AMCG00018251 natd1,LOC107745813 other downstream 2701447 5356846 ~ 5366754 (-)
G115183 NA other downstream 2763772 5300107 ~ 5304429 (-)
AMCG00018344 NA other upstream 567949 8641896 ~ 8648807 (-)
AMCG00018339 NA other upstream 592790 8666737 ~ 8676808 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 1165865 9239812 ~ 9258202 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 1700359 9774306 ~ 9779545 (-)
G116165 NA other upstream 1845099 9919046 ~ 9924582 (-)

Expression


Co-expression Network