AMCG00018334


Basic Information

Item Value
gene id AMCG00018334
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8519603 ~ 8541039 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018334
GGAAGGTCGAGTCCTGCCGGAACCGGGCGGGTATAACCGCACTGCGGGACAGCGCCCCCTACCGGTCTGTTCCCGGCGCGTCGCCTTAAATCACCGAAACTCTGAAGGACTGGTTATGAAACGAAAGCAGCACAAAATCGCACAATTTCCACGTCTTTTCACAGCAGAGGTTCTTTGCAGTCAATGGGGATCGATGACTTTTGCAGCCTGGACGGGTCCGATCCCTTCTGGAACTGGAACAAGACGTGGTACACCCCCAACCCGGACCTGACCCAGTGCTTCCAGAACACGGTGCTAGTGTGGGTTCCTTGTATCTACCTCTGGGTCTGCGCACCCTTCTATTGCCTTTACCTCTACTGCCATGACCGCGGTTACATCCGTATGACCCACCTCAACAGAGCCAAAACTGCTATTGGTTTCTTGTTGTGGATTCTCTGCTGGGTAGATGTTTTCTACTCTTTCTGGGAAAGAAGCCAGGGTACTTTGAAAGCACCCGTCTATTTTGTCAGCCCCACATTGCTGGGCATTACAATGCTGCTGGCCACATTCCTGGTCCAGTATGAGCGCTTGAAAGGGGTCCAGTCCTCGGGGGTGATGCTCAATTTCTGGCTGATTGCTGTGATCTGCGCCACAGTCAGCTTCCGGTCCAAGATTCTGCACGCGCTCAGTGAGCTGTCCAGCGTGAGTGTGTTTCGATACACCACCTTCTACACCTACTGTGCCCTGCTGGTCATCCAGctcttcctctcctgcctgTCAGACCAGCCCCCACTCTTCTCTCAGGCAGTCAAAGACTCGAATCCCTGTCCAGAATTGGGGGCTTCCTTTCTGTCCAGGATAACATTCTGGTGGATCACAGGGCTGCTTGTGCAGGGATTCAGACGTCCCCTGGAGGACCGAGACCTGTGGACCCTGAACGAAGAGGACCGGTCCCAGAATGTGGTTCCCCACTTTGTGCGCCGCTGGGACAATGAGTGCTCCAAGGTCAAAAGAACCTTGGTGAACACCCTGTACTCCCCGAAGCGCTCGGCACGGGCAGCAGTAGCGGAGAAGAAAGATGGCGCTGTGGTGGAGGAGGCCGAGGTCCTGATCGTCAAGGATTCCCAGAAAACCCGCGAGCCCTCCCTCCTCCTGGCGCTGTGTCTCACCTTTGGCCCTTACTTCCTCATCAGCTTCCTCTACAAGTTCATCCATGACATCCTCATGTTTGTTGGCCCTGAGATTCTCAAGCTGTTGATCCGCTTTGTGAATGACCCCAGCGCCCCTGCTTGGCAGGGCTATTTCTACACGATGCTGCTGTTCTTGTGTGCCTGTCTGCAGACCCTCATCTTGCAGAAGTACTTCCACGTGTGCTTCGTCACGGGCATGAGACTCCGCACTGCCGTCGTGGGGGCTGTGTACAGAAAGCGCTTCATGGACCTGGTCACCTATATCAATATGATCTGGTCTGCCCCCCTGCAGGTCATCCTGGCACTCTACTTCCTGTGGCAGAATCTCGGCCCCTCCGTCCTGGCTGGCGTGGCAGTGATGATCCTCATGGTGCCAGTGAATGCTGTCATCGCCATGAAGACCAAGACCTACCAGgtgGCCCAGATGAAGAGCAAAGACAGCCGCATCAAGCTGATGAACGAGGTCCTGAATGGTATCAAGGTGCTGAAGCTGTACGCCTGGGAGCTGGCCTTCAAGGGCAAGGTGCTGAAGATCCGGGATAGTGAGCTGAATGTGCTGAAGAAGGCTGCATACCTCTCCGCCGTGTCCACCTTCACCTGGGTCTGCACGCCTTTCTTGGTGGCACTGTCGACGTTTGCTGTTTACGTTCTGGTGGATGACACGAATGTGCTGGACGCACAGAAGGCCTTTGTGTCGCTGGCGCTCTTCAACATCCTGCGCTTCCCTCTCAACATGCTGCCCATGGTGATCAGCAGCATGGTCCAGGCGAGTGTTTCCTTGAAGCGTCTGCGTGTGTTCCTGTCCCACGAGGAGCTGGATCAGGACAGTGTGGACCACAAGGCCATCATCGGCTCCACCGACAGCATCTCCGTTGTTGATGGGGTGTTCAGCTGGTCCAGGAATGACCCACCGACTCTGAATAGgaTCAACGTGCACATCCCAGAGGGGGCGCTGGTGGCGGTGGTGGGCCATGTGGGTTCTGGCAAGTCCTCCCTGCTCTCAGCACTCCTCGGGGAGATGGTGAAACGGGACGGCAAGGTCTCTGTTAAGGGTTCAGTGGCCTATGTGCCCCAGCAGGCCTGGATCCAGAATGCCACCATGCGAGACAACATTGTGTTTGGGCGTGAGAAGAAGGAGAATTGGTACCAGCGTGTGGTGGAGGCCTGCGCTCTCCTGCCCGACCTGGAGATCCTGCCTGCCGGGGACGCCACTGAGATTGGGGAGAAGGGGGTGAACCTGTCTGGGGGGCAGAAGCAGCGGGTGAGCCTGGCGCGGGCAGTCTACTGCGACTGTGCCGTCTACTTGCTGGATGACCCCCTGTCTGCAGTAGATGCACATGTAGGCAAACACATTTTCGAGAAGGTGATCGGGCCACAGGGAGTGCTGCAGGGCAAGACGCGTGTGCTGGTGACGCACGGGCTGAGCTTCCTGCCGCAGGCCGATCTGATCCTGGTGCTGGTGGACGGGGAGATCACAGAGATGGGCTCCTACCAGGAGCTGCTGGACCGCCACGGAGCCTTTGCCGACTTCCTGCACACATACGCGAACACTGAGCAGTCCAATGACGAGGGCCACTCAGATCTGAACTCCCTGGGAAGAGAACAGAGAGGACTGGAGAATACAGGGCCTGCAACCCTGCCGAGACTGAACAGCCAGAGCTCCAGCACAGGGGCCGACTCCATTAAACCCATCCTGAAGAGTGGTACCAGTGAGCCCTTGGGCAAAATGGAGAAACCAGGAGCTGGTACTATGGAGGCAGGAAAACTCACAGAAGCAGACAAGGCGAAGACAGGCAAGGTGAAGCTCTCTGTGTTCTGGGAGTACATGAAGGCCATTGGtgtcttcctctccttcttcaGCATCTTCCTCTTCCTGTGCCACCACGTCGCTTCCCTTGCCTCCAACTACTGGCTGAGCCTGTGGACCGATGACCCTGTGATCAACGGCACACAGCAATACACTGAGGTCCGACTGGGCGTGTACGGCGCACTGGGGATGGTGCAAGGCATTGCTGTGTTCAGCTACTCGATGACAGTGTCCTTCGGGGGTATCCTGGCCTCACGATACCTTCACCAAACCATGCTGCACAACGTACTGCGCTCTCCAATGGCTTTCTTCGAGCGCACGCCCAGCGGCAACCTGGTCAACCGTTTCGCCAAGGAGACGGACACCATCGACTCGGTTATCCCTGGGATCATAAAGATGTTCATGGGCTCCATGTTCAACGTGCTGGGTGCCTGCGCCATCATCCTCTTTGCCACACCCATCCGTTTCTATGTGGCTTCATCGAGGCAGCTGAAGCGCCTGGAGTCGGTTAGCCGCTCGCCGGTCTATTCGCACTTCAACGAGACCTTGCTGGGCACCAGCGTCATCAGGGCATTCCACGAACAGCAGCGCTTCATCACAGACAGCGACGGCAAGGTTGACTACAACCAGAAGGCCTACTATCCAAGCATCGTGGCCAACAGGTGGCTGGCGGTGCGACTGGAGTTTGTGGGAAATTGCATCGTCCTGTTTGCAGCCCTGTTTGCCGTGGTGGCCAGAGAAACACTGAGCCCTGGCCTTGTGGGGCTGTCCATATCTTACGCGCTGCAGGTCACAGCATCTTTGAACTGGCTGGTGCGGATGTCCTCAGAGCTGGAGACCAACATCGTGGCCGTGGAGAGAGTGAAGGAGTATGGAGACACTGAGAAAGAGGCATCTTGGCAACTGGAAGATTCTGGACCTCCACAGGGCTGGCCCACAGCCGGCCGAATCGAGATGCGCAACTTTTGCCTGCGCTACAGAGAGGACCTGGAGCTGGCTCTCCGAGACATCACTGTCACCATTGAGGGAGGCGAGAAGGTGGGCATCGTGGGCCGTACAGGAGCCGGGAAGTCTTCTCTGACGCTGGGGCTGTTCCGGATCATCGAATCTGGCGGCGGGGAGATCTGCATCGACGGCGTGGACATCGCGGGGCTGGGGCTGCACGACCTGCGCTCTCGCATCACCATCATCCCACAGGACCCTGTGCTGTTCTCCGGCTCTCTGCGGATGAACTTGGACCCCTTCGACTTGTATTCTGACGAGGAGGTGTGGAGGTCTCTGGAGCTGGCCCACCTCAAGACCTTTGTCTCAGGGCTGCCGGACAAACTGGAACACGAATGTTCGGAGGGAGGAGAGAACCTCAGTCTGGGGCAGCGCCAGCTTGTCTGCTTGGCCCGGGCTCTCCTCCGCAAGACCAAGGTGCTGGTTCTGGACGAGGCCACGGCGGCGGTCGACCTGGAGACGGACGACCTGATCCAGTCCACCATCCGCAGCCAGTTTGAGGAGTGTACCGTCCTGACCATCGCTCACCGCCTCAACACCATCATGGACTACACCCGAGTTCTGGTCCTGGATAAAGGGCAGATTGTGGAGTTTGATTCTCCATCTAGCCTTATTGCCCAGAAAGGAATCTTCTACAGGATGGCCAAAGACTCTGGCTTGGTGTGACCTGAGGTCTCACCTTGGGGATGGACCACTGATCCATATGAACTCTCTTGATCCTTCAGCCAGTATCTTCCACAGGAAGAAGTGGTAGCCTGAGGGACCTGTGCCTGTCTCTTTGCACACTGCCCACCCACACATCCTGCTCTCCACTCTCCACATCTCCACTGCAGGTGGGCCAGCATTCAACGGCCAGCTCTGTTCATTCGGTGCTGGACAACCTCATATCATGTATACATACTTTCCACCTCCAGTCTTCGAGCTGCAATAATGCTCAGGGTTGTTAATTTCAAatagatattgttttaattttgtacatcCAAAGTGTAACTAGTCAAAGTTGCTTTCCAGGGTATGATCTGCAGGGCTCTCCCTGCCTCCAAACCCAGTGGTGGACATCAGAGATTTCTCTCATTTGTATTGGTGGCCTCTAGTCTCTGGGCTTTTCCAAAGATGTCTCTGATCTCCTCCACCCCACGCCACAGCCAGGCAGGGAGAGGGCTCAATGTGTTATCAGTCACCTGGTTTATCAATATTTTGCTCCAGGGTTGAGGGGGTCATCGTATCTTTGATTGACCGaccaaaaactgaaattgtgtATGCCAAAAACGAAGCTCTTCGTAGGCTCTGAAGGCCATGGTTGGGCATCTCTATGGTAAAGGCACTTTCTGTAAATTGTCTTAGACATGCAGGGCCAAGAATAGTCCTTAATTTCAGTTCTGGCTCTGTAAGGCTGCATTATTCCAATGATTAAGTGCTATGAACATGAAAAAGGACCTGGTTATGAATACCTGTATGACATCTGACAGACTTCTGATGGTGAACCTACATTCTTAATAAAGGCCGACTGATGTATTCAGTTGTCTTGCCAAAGGAAATTAGACCTGTGGACTTTCCCAATAAAGGATAAAGATGGCTGAGACTGTTCTAAGCCCACAGCTTCTCATATTGCCATATCACATGGGAATACAGTACAGTCTTCGTCATTTGTCTTTGGCTTCTTTCACTTGACTTTTCATCACAGGGCTACCTAGGCCTAAATGCACCCTCTGTATCTCTGATTGATGTTGTGGCTCAGATagctttctctttcttctgaCTTGTAGTTAAGGAACTGTAAAATAGAGCTGACAAGACAGGGCTTCACGTCACCAGCTGAAGCTCTTTTTTCCGGTTCTTGTGGTAGGGATAAAATTACAGCCAGTAAGCCGTAGATCATTGCCTGACCATGGCTGCATTTGTGTGGTGGCACATGTATCTTAAGCCTGGATGTGTGAATAAGGGGCTTCTGCTGGTAGAAGTGGCCATCTCAGGTGTTCTAGTTACTAATTGATTTGTTCCCAGTAGCTTCTATATTGTGTGTCCCAGCTGAACAAATGTTACATGAATGTACCAGTGTATTTCTTGATTGTGTGTCCACTGTCTGATGAACAGTggcatttttcatgttttatatatatttaggtcAATTtaggggaaaacaaatatatatattttttctttctattgttATCTTGATTTGTCATAAGATATGAAAAAGATTAACctgataaaaagaaaatgctatttaattttgcatatttatattattgtaaatattcaGGGTATGACAATTTCTGCTGTTGTGTACATTTAGCCAGGCTTCCGAGTGAGCATCTTATTTTGTATCAGGGAAACCTGCCGCACAAACGATAAAagagaaataatgaaaagtttgacatttttgttaACGTTTTGGCTGCAGTGTGGTGATTTGTTTGACTGACCAGTTTTATGATCATCATTCTGATCAGTCATCCTGGGATCTGTGATGCCACTGTCCTCCAGAGGGCAGCATTGGTTCAGAGTCTGGTATGAGAACCCAAATACATAACAATTCTAAGCACATTGCATAATTTACTGATGTCATTGAAAAAATTCTGATGTTGTTCTCTAGCTATAAGGCAGGACATGTTGTGGTTTACCAAAGCAATGCCAG

Function

GO: NA

KEGG:

id description
K05665 ABCC1; ATP-binding cassette, subfamily C (CFTR/MRP), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018334 True 6616 mRNA 0.53 31 8519603 8541039

Neighbor

gene id symbol gene type direction distance location
AMCG00018329 coq7,LOC106564609 coding downstream 49974 8463319 ~ 8469629 (-)
AMCG00018331 NA coding downstream 70659 8443195 ~ 8448944 (-)
AMCG00018328 syt17,LOC107729446,LOC107658452,LOC107674134,LOC107564007,LOC107732856 coding downstream 96701 8409902 ~ 8422902 (-)
AMCG00018330 smg1,LOC107729485,LOC107564004 coding downstream 128463 8363373 ~ 8391140 (-)
AMCG00018326 arl6ip1,LOC107658451 coding downstream 159447 8343130 ~ 8360156 (-)
AMCG00018343 NA coding upstream 56054 8597093 ~ 8602734 (-)
AMCG00018341 clg6h16orf45,LOC101485480,LOC102775719,LOC108236367,LOC103355942 coding upstream 84838 8625877 ~ 8631588 (-)
AMCG00018342 NA coding upstream 136825 8677864 ~ 8684648 (-)
AMCG00018340 LOC108274424 coding upstream 146670 8687709 ~ 8688230 (-)
AMCG00018347 NA coding upstream 152320 8693359 ~ 8698933 (-)
G115807 NA non-coding downstream 400 8517334 ~ 8519203 (-)
G115732 NA non-coding downstream 86033 8430126 ~ 8433570 (-)
G115599 sept12,LOC107568113,LOC107690244,LOC107733855 non-coding downstream 650977 7860316 ~ 7868626 (-)
G115596 NA non-coding downstream 676895 7842337 ~ 7842708 (-)
G115580 NA non-coding downstream 776856 7742541 ~ 7742747 (-)
G115874 NA non-coding upstream 320834 8861873 ~ 8862377 (-)
G115949 NA non-coding upstream 659761 9200800 ~ 9215817 (-)
G116058 NA non-coding upstream 939871 9480910 ~ 9482152 (-)
G116065 NA non-coding upstream 986453 9527492 ~ 9527736 (-)
G116136 NA non-coding upstream 1243391 9784430 ~ 9788579 (-)
G115581 NA other downstream 745711 7743218 ~ 7773892 (-)
AMCG00018291 NA other downstream 1866830 6610633 ~ 6652773 (-)
G115320 NA other downstream 2568548 5950421 ~ 5951055 (-)
AMCG00018251 natd1,LOC107745813 other downstream 3152849 5356846 ~ 5366754 (-)
G115183 NA other downstream 3215174 5300107 ~ 5304429 (-)
AMCG00018344 NA other upstream 100857 8641896 ~ 8648807 (-)
AMCG00018339 NA other upstream 125698 8666737 ~ 8676808 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 698773 9239812 ~ 9258202 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 1233267 9774306 ~ 9779545 (-)
G116165 NA other upstream 1378007 9919046 ~ 9924582 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_06850660_06870302 ABCC1 coding CI01000046 null 6850660 ~ 6870338 (+)