AMCG00018338


Basic Information

Item Value
gene id AMCG00018338
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8650411 ~ 8666659 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018338
GAAAGCGGAGCCACTTTCCAGGAAGTAAACGGACACCGCTGGTGGAGCGCAGAGGAGTCATATTAGCGAATCGGGGGGATACATACCATCCAGATATCACAGCACCCCCCAAACAGAGGGCATCCAGCCGGGGCCGTCGACCTGCCCCTGCCTCCCGTCGCTAATGGAGAAGCCTGTTCACCAGATGGTGGTTGACCCCACGCTCGCGGAGATGGGAAAGAATCTCAATGAGGCCATGAAGATTTTGGAGGATGGTCAAAGGGAAGCGGAAGAGGACAAAGACAAAAGGAGATATGGGCGGAAGGACATCCCAGGGCCTCTTCAGGGAAGtgggCAGGACATGGCCAGCATCCTCCAGCTGGTTCAGAACCTGATGCATGGGGACGAGGAGGAAGATAATCAAAGTTACCGGATGCAGAACGTGGGGGAGCAAGGGCACATGGCCTTGCTGGGACACAGCCTGGCGGCCTACATCTCGGTGCTGGACAGGGAGCGGCTGAGGAAACTGACCACACGCATCCTGTCGGACACCACCCTCTGGCTCTGCCGCCTCTTCAGGTATGAGAGTGGCTCAGCCTATTACCACGAGGATGACCGGGAGGGGCTGCTCAAAGTGTGCCGTCTGGTCATCCACTCACGCTATGAGGACTACTCGACCGAGGGCTTCACTGTCCTGAACAGCAAACAGCCAATCATCTACCAGAGTGCAGCCTGCAGGCAGGGACTGGGACAACACCTCTGCAACCAGGACGTGGCTCTTCTGGACAGACTGATTAAAGATGATGTCGACTCCGGAAAGCTCCCTTTGCTGTTGATAGCGAATGCCGGAACACCAGGTGCCGGGCACACAGACAAGCTGGGCCGCCTCAAGGAGCTGTGTGCACAGTACAGCATGTGGCTGCATGTGGAAGGAGTCAACCTGGCGACCCTGGCACTGGGCTATGTCACATCCTCTGTGATGGCAGCCACCAAGTGTGACAGCATGACCCTGACACTGGGTCCATGGCTTGGCCTGCCTGCTGTGCCCGCTGTCACTCTGTATCGACACGAAGATCCTGCCTTGTCCCTGGCAGCAGGCCTGACTTCCAGCCAGCCAGTGGAAAAGCTCCGTGCCCTGCCGCTCTGGCTGTCCCTGCAATACTTGGGGCATGATGGGATAGTGGAGAGGATCAAGCACGCCTCCCAGCTGAGTCAGAGACTGCTGGACCATCTGAAGAACCTGGCTTCTATAAAGACCTCGGTGGAGGATGAGCTGAACTCTCCGGTGGTGGTGTTCCGGTTCTCCCAGGAGGGAACCAGCGGAGCATCCAGCGGTGGCTCATTGGAGGCCCCCCTcagtggagagagggaggtgcaGGACGCCCTCAACAGATGGCTTGGTGAGAGACTGGCACAGCTGGTGCCAGCCAGCGGGGTGGACGTGGTGGAGCTGGAGGACGAGGGCAGCTGCGTGAGGTTCAACCCACTCATGACTGCCGCGGTGCTCGGCACCCGGGAGGAGGACGTGGACATACTGGTGGACCGGCTGCAGGAGAAGGTGCCCCTGCTGAGCAGCACCCTGAAACTGCGCCAGGACTTCCAGGAGGAGGTGTACCGTACCCCCACGCTCATCTACATTGAGGACCTAAGCTGGCCCGGCCTGGGGGCTGTCAGGTATAAGTCCAGCAGCGAGGAACCCGATGTCAGTAAGAGGGAGGTGGAAGAAGAGAACATCAATAGTGCGCTGCTGAGGAAACTCAAGGAGCTGGACTCTGACCTGAGCTTCTCCACAGGCCCAGAGTTTGGCCCAGAGAAGAACTGCATTTACGTCGGCATTGCGACAGAGGACTTGGACGTGGTGGAGCTGGTGGAGACCGTCGGCGCCATGGGCCGAGAGATCGAGGAGAACTCCAAGCTGCTAGAGAATATGACTGAAGTGGTGAGGAAGGGGATCATTGAGGCAGAGTTGCAGCTTCAGAAGGCCAATGAAGAGAAGCTGTTGGAAGAGGGAGTGCTGCGCCAGATCCCCGTTGTGGGCTCCGTCCTCAACTGGTTTTCCCCCGTCCAGAGCTCTGTCAAGGGCCGCACCTTCAACCTGGCAGCAGGCTCCCTAGACTCCACAGAGCCCACCTACTCCATGAAGGCTCAGGTGGTCCAGGGCACACCACCGTCCACCCCCACGTCCTCTCACAGCAAGCAGCGGCTCCCAGGTCAAAAGATGTTCCGGCGCTCTCTGGTTGGCTTGGACGCGCTCAGTGAGACTAGCTCAGTGTGTCAGGGGGAAGAGCTGGAGAGGGAGGGCCTGCAGAACCCTGCCCCCGAAGTGTCGGTCTCCGAGGCCCCGCAGCATCCAGCCCATGAGGCCGTGGAGGAGGCTGGGACCCCTGGAGATCCACAGCAGAGCGCGGTGGGCCAGCAAGAGCCAGAGGGCCAGGAGATGGAGCAAGAGCAGACAGACACTCTGAGATAGGGATCCCTGGGAGATGAGAGGTgctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018338 True 2475 mRNA 0.60 22 8650411 8666659

Neighbor

gene id symbol gene type direction distance location
AMCG00018337 NA coding upstream 4303 8643855 ~ 8646108 (+)
AMCG00018335 NA coding upstream 26757 8604721 ~ 8623654 (+)
AMCG00018336 myh11,LOC103025732 coding upstream 57690 8553588 ~ 8592721 (+)
AMCG00018333 cp063,fopnl,LOC106564614 coding upstream 107296 8541991 ~ 8543115 (+)
AMCG00018332 LOC106588920,LOC100691027,LOC101464353,LOC102776973,LOC102312408 coding upstream 135519 8486566 ~ 8514892 (+)
AMCG00018345 snx29,LOC107554010 coding downstream 52081 8718740 ~ 8731928 (+)
AMCG00018349 NA coding downstream 116970 8783629 ~ 8810474 (+)
AMCG00018348 snx29,LOC107554039 coding downstream 146360 8813019 ~ 8847184 (+)
AMCG00018350 NA coding downstream 265431 8932090 ~ 8937602 (+)
AMCG00018351 NA coding downstream 270956 8937615 ~ 8941636 (+)
G115678 NA non-coding upstream 277584 8352077 ~ 8372827 (+)
G115679 NA non-coding upstream 302575 8294416 ~ 8347836 (+)
G115640 NA non-coding upstream 555962 8094200 ~ 8094449 (+)
G115591 NA non-coding upstream 752231 7897940 ~ 7898180 (+)
G115585 NA non-coding upstream 759510 7883205 ~ 7890901 (+)
G115796 NA non-coding downstream 36498 8703157 ~ 8704903 (+)
G115873 NA non-coding downstream 195422 8862081 ~ 8862511 (+)
G115875 NA non-coding downstream 201883 8868542 ~ 8870342 (+)
G115896 NA non-coding downstream 369671 9036330 ~ 9036583 (+)
G115931 NA non-coding downstream 532218 9198877 ~ 9199440 (+)
G115648 NA other upstream 528240 8119778 ~ 8122171 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other upstream 755962 7893627 ~ 7894449 (+)
AMCG00018280 NA other upstream 1902973 6710482 ~ 6747438 (+)
AMCG00018272 NA other upstream 2489795 6155488 ~ 6160616 (+)
G115299 NA other upstream 2699394 5949463 ~ 5951017 (+)
G115789 NA other downstream 26705 8693364 ~ 8694719 (+)
AMCG00018358 polr3k,rpc11 other downstream 532998 9199657 ~ 9206776 (+)
AMCG00018360 f100a other downstream 573152 9239811 ~ 9245234 (+)
AMCG00018368 NA other downstream 772998 9439657 ~ 9447144 (+)
AMCG00018369 NA other downstream 814293 9480952 ~ 9486146 (+)

Expression


Co-expression Network