AMCG00018339


Basic Information

Item Value
gene id AMCG00018339
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8666737 ~ 8676808 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018339
GGGAGTCGTAAAGCGTGTAGCAGAGAGGACGTTGTGATTGAATTACTTgcatctttcatttaaaaaaaaatgcctctTCTAATTAACAGCTGTAAAATTGAACGTCCTCACACGACCGCTGAATTCTTCAAAAAGTACCCACATCTACAGGACAGCGCCAGGGCCTTTCGGGTGAAGACGGCGGGCAGTGTGGACCCCGCGGGGCTGCTGTACGTGCAGCAGAGAGAGTTCGCTGCGACCACCCCAGCAGACCaGTCCGTCACTGTACTTGCATCTGATGACGCCACCACCTGCCACCTGGTGGTATTGCGACACACGGGAAGTGGTGCTTCTTGCCTGGCGCACTGTGATGACTCCAGCACCTGGAGTGAGGTCCCACTGTTCGTTGAGGCAGTGACATCACTCAGCAGCCACACTCAGGAAGGAAGGCAAGATGAAATGGGAGTTTTGTTGGAGCTGCATCTCGTTGGTGGTTTCGATGATGACATGAAAACATCCCAGAAACTCAGCCTCAGCCTTCTAGCCACCTTCCACAGTCAGAAAGAGGATATTCACCTGGTGACGTGCTGCATCACAGagctgaatGATGTCGTGTCTGAAGGGATCCACAGACCTGCGGTGTATGGAATAGGAATCAACGTAAAAAGTGGGGAGGTGTTCCCAGGGTCCTTCCCCAGCAGAGGCCCGGCCGAGGAGCTGCGATCAGCGCGGACCTTCACTGGAGGACAGATGGCCAACATCTACGATTCCAGTAAAGAGCTGGTGAAGGTCGGGCCCTGCAAATGGTCGCCCAACATGGACATCGGCTTCTGGTTGATGCAGGACGATGACACTATATTAAAGTACCTGTCCACATCGCCTCAGGTGGAACCTCCACACTTCATACAGCACATCAAGAGCACCATCCAGTTCCTGCTGGACCATCCCAGCCCTGACAGCCTGTTTCCAGGGGGACAGGCCCAGCTCTTCCACAGGACGGAGCAGGGAAGCTGGGAGAGGGTGACTCCAAGCGAGCAGCAGTAATGATCTCATGTCCTCTTCCCACTGTACGTACTGAGAACGGAGGTATCCTCCTCCCCAGCGTCAAGAGCCATGCCACGCCTTACCCCAAGCTTTCCGGTTCCTCTGCCGTGTCCCATTTAGCCTCCTCATTTGATAATGTACTGATTTTACCTGACTGAAGTGACCGAGCCCTTTGTCGATGTCTTTTGAGATCTCTGATCTCTGATCTCTGAGTGTTTGAGGTGATTGAGGTGTCCAGCTCATCTCTGTCAAGACTCCCATTGATGAAGACTGGGGTTGGCATGACTTCACACTGTACAATCCTGTTGAGTCTGTTGAGACTACTCTCGGCAGGCTCTCACTGTACTTACACTGTAAGCCTGGGAACAATATGTTATGCAGCACAACAGGAGAGTGAATTACAGTCCCATAACGCTGCAGAGCTGCCCTTCATTCCCCTCGAATCCCCTTGTTTATTCCCCCAAGTGGGTGTGTTGTCGTGCCAGGAATCGCAGCCTCTAAGGGGACGTGGATTACCTCAGGGCTCTCGCAGGCCGCCCTCTGGTTTAGCATAAGAACATTTTAGAGCAAAGGAAAGACTTTCAAAGGAAGAAGCAAGATCCACGGCAGATGattgtgagaaaaaaaatattcatttaaagTAACGTATGTAAATGTGCATTGGTCTCTGCAGTAACAGTCAGAGGGATGACTTTCCTACAATGTGTTGGGGAAATCAGAACTGGAGGCCCAGGGGTAAaagtaagaaaaagaaaaagacatagTGGAAACAATATGAATCAAGTTTAATAAAGTAGTCAGGATTCAAACagggctttttttctttcaaaaggaaATCTGCCTCACAGcttggagatttattttttaaacaaaaaaaaaaaaaaaaagaggaaacaaTCACCTAGACAAGACTATATCAACAACAATCTGAATGtcttcttttgcttttaaagtttttttttaatacaatattgtcTTCAAACCACAAAATTTATGTAAATGGCaaaaagaaatttaaaaaaataataaaataaagccccTCCCATCcccttaatatatatatatatatatatatatatatatagatagatattaaaATTAGACACCAGATTACCCCCCCTCCGTCTCTATAAATCAATATTCTTCATTGCaccaaaaattacaaaaagaacCATGTTATAATAAAGGAGGAAGACAAATAGATCTGAGCACTTAAAACACAGCGAACAAAAATTGCACTTTCTAGAAGGTAAAAATGTCACCCCCTTCAACACCACCCTTGCAGAAATCTCCACTCTCTGGGTTTGGCATTGTGTAGCCTGAGAGCACAGTGCTGTCAGTATGACCGCAGTGAATGTGGGCAAGACTAACCCTGAAACATGAGTGGCCTCTCTGTATTGTTTCTTCAAGCCTTTTGTATGGTTTCAAAGCTTATCTGAAACGAGCATGGTTTTGATTTCAAGGCTGTATTACATGTTGCTCTATACTAAACTCTGCATGAGCTGGTGTTGTAGAGGGGGGAGGGgaatcatacaaaaataaaaattacctAAAAAGTAAATTCACGTGTTGGATGTGcacttaaaaaaatcatattgcACTGATATACTGTATGCATGTGTGCACTATATGTCATGTGTGAATTGCAATGGAAAATCTATCCCACATCAAAGTGTCCAACTGCTAGGGGACACTAACAGTGCTACACATTGTGCTGGAGCTCGTGAGTAATTGGAGGGGTTAAGTGTTACATCCTTTCAGTAGCACCTGGACGGTTTGGATTTTTGTGCATCAGGGAAAAAAGTTACCTATATCTGGTAcggacattatatatatatatatatatatatatatatatatacatatataggttttgatgtaaaataatttaatctgttatattaaaaaaaaaaaaaatgtagatcaCACAAAAATCTAACTAGGGTGTTGCGAGACACATGCTTCATACAAACACTAAGGAAACCTGAACATACTAGCCAGCGATGGATGTTTTCATATTGAAGATTAATTCTAATTAGAGATTTCtaaaaacagatttcaatttttttttttttttttttggtatggtTCTACTCATTCCCAGCACCTATTAAACTGGATTACCATTTTTACcttcttttcagtttcaacGAGTTGCTTTATCAATAACACCCTGCTACATCTACAGTGCatcccttcatttttttttttttaaacaaagcttAATAATAGTTGCACTTTGGTGATAAGATGTTTGCAAATTGGCCCCATTGTCTCTCGATAAGCATTCAGTGTTAGTGGTGCTCTGGTCCCTGGGTTACTGGGAGGATTGACCTCATCACGCTGGGGGCGGTGCGATCAGTCATTGCAAACCCTACAGCTCAGCAGCCCAGTAACTGGAGCTTCATTGCAAAACCCGCCTTTGctgtaaacacacaaagcagTATTCCTACGTAACTTGACCTTCATGACACATCAGCTTTCATGGAGAACCTGCCTTTACACTCCCGATGTTAAATCCTCCGATTGAGCCTGAGTCACAGTTTGCAGCCTATCTTGCGAAAGGAATTACAATGCAATTAGTGTTATCTATCTATTAGGATCTTTACGTTAATGTTAGctagcctttttttttaaattatattattttttacatcaaCTAACCAAGGCTCTTGTgagttagttttctttttttcctttggaaaaaaataaaataaataaaacaagatctAAAGGAAACAACAGTTCAAACAGCCTGTGAACCAGGCGTTGAGATACAGAGAAACGTTCCTTGCTCTTCAGGGGAAAGGGTGTGTAGACTACTGATCAATTATATACGAGGGTGACGTCACAAAGGAGCAGCAGTAGTATGGTGTTACAGAGGTTCTACAAGTTTAAAGTGTTCTGTAATAACATTTTCCAGTTCTCCCATATGAATCTGTAAGCACTTCTAGGTTCCTTGATTCACATTAACCCAGTTCTATGCCAGCACATTCCCTCCCCATCACTCTGGCCTGTAGCTGTACTGTCCTGCTTTGGGGGATACTGCCAGCTGAGAGATGGTCCTGGGTAGCCTATCAACTCTTAATACAGGATCCTCTCCTGGGTTTCTGTGTACTGTCCCCTGAACAACCAAATACTTAGTGTACAGCTTCTAGCACAGTGGCCCGATGGTCTCTGAGCTTGTAGACTACTGGTGTGTGTACTACATTTCacgcattatatatatatatatattt
>TU145067
tatatatatatatatatatatatataggttttgatgtaaaataatttaatctgttatattaaaaaaaaaaaaaatgtagatcaCACAAAAATCTAACTAGGGTGTTGCGAGACACATGCTTCATACAAACACTAAGGAAACCTGAACATACTAGCCAGCGATGGATGTTTTCATATTGAAGATTAATTCTAATTAGAGATTTCtaaaaacagatttcaatttttttttttttttttttggtatggtTCTACTCATTCCCAGCACCTATTAAACTGGATTACCATTTTTACcttcttttcagtttcaacGAGTTGCTTTATCAATAACACCCTGCTACATCTACAGTGCatcccttcatttttttttttttaaacaaagcttAATAATAGTTGCACTTTGGTGATAAGATGTTTGCAAATTGGCCCCATTGTCTCTCGATAAGCATTCAGTGTTAGTGGTGCTCTGGTCCCTGGGTTACTGGGAGGATTGACCTCATCACGCTGGGGGCGGTGCGATCAGTCATTGCAAACCCTACAGCTCAGCAGCCCAGTAACTGGAGCTTCATTGCAAAACCCGCCTTTGctgtaaacacacaaagcagTATTCCTACGTAACTTGACCTTCATGACACATCAGCTTTCATGGAGAACCTGCCTTTACACTCCCGATGTTAAATCCTCCGATTGAGCCTGAGTCACAGTTTGCAGCCTATCTTGCGAAAGGAATTACAATGCAATTAGTGTTATCTATCTATTAGGATCTTTACGTTAATGTTAGctagcctttttttttaaattatattattttttacatcaaCTAACCAAGGCTCTTGTgagttagttttctttttttcctttggaaaaaaataaaataaataaaacaagatctAAAGGAAACAACAGTTCAAACAGCCTGTGAACCAGGCGTTGAGATACAGAGAAACGTTCCTTGCTCTTCAGGGGAAAGGGTGTGTAGACTACTGATCAATTATATACGAGGGTGACGTCACAAAGGAGCAGCAGTAGTATGGTGTTACAGAGGTTCTACAAGTTTAAAGTGTTCTGTAATAACATTTTCCAGTTCTCCCATATGAATCTGTAAGCACTTCTAGGTTCCTTGATTCACATTAACCCAGTTCTATGCCAGCACATTCCCTCCCCATCACTCTGGCCTGTAGCTGTACTGTCCTGCTTTGGGGGATACTGCCAGCTGAGAGATGGTCCTGGGTAGCCTATCAACTCTTAATACAGGATCCTCTCCTGGGTTTCTGTGTACTGTCCCCTGAACAACCAAATACTTAGTGTACAGCTTCTAGCACAGTGGCCCGATGGTCTCTGAGCTTGTAGACTACTGGTGTGTGTACTACATTTCacgcattatatatatatatatattttttttttattattatttttttaaaggatgaaAAGCTTATCAAATCATGTATTTCTCTGCTTGTATAATGCATTATGTGAGGGGGTCATATCCATGTACTGTAAATTCAGGTGGACAAAAAAAAGACTACTaaggaaaacatatttctataaataaagtaaGTTGAAAATTCTGATGTTCTTTTCTCCCACCCCATGATTTGCTTATTCACAACTTCACAAGCCTCATTTATCCCGTGAAAAAGTTCTGCGGAACAAGGGAAGTGGATTTCAAACCACCCAGCGCAGTTCAGACGGTCATCTACCCACGAGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008418 protein-N-terminal asparagine amidohydrolase activity molecular_function

KEGG:

id description
K14662 NTAN1; protein N-terminal asparagine amidohydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018339 True 4262 mRNA 0.43 11 8667048 8676808
TU145067 False 1707 lncRNA 0.38 2 8666737 8672851

Neighbor

gene id symbol gene type direction distance location
AMCG00018341 clg6h16orf45,LOC101485480,LOC102775719,LOC108236367,LOC103355942 coding downstream 35149 8625877 ~ 8631588 (-)
AMCG00018343 NA coding downstream 64003 8597093 ~ 8602734 (-)
AMCG00018334 NA coding downstream 125698 8519603 ~ 8541039 (-)
AMCG00018329 coq7,LOC106564609 coding downstream 197108 8463319 ~ 8469629 (-)
AMCG00018331 NA coding downstream 217793 8443195 ~ 8448944 (-)
AMCG00018342 NA coding upstream 1056 8677864 ~ 8684648 (-)
AMCG00018340 LOC108274424 coding upstream 10901 8687709 ~ 8688230 (-)
AMCG00018347 NA coding upstream 16551 8693359 ~ 8698933 (-)
AMCG00018346 LOC104930119,LOC101486217,LOC102210124,LOC108246886,LOC106529451,LOC100701961 coding upstream 23603 8700411 ~ 8717402 (-)
AMCG00018353 NA coding upstream 147834 8824642 ~ 8905411 (-)
G115807 NA non-coding downstream 147534 8517334 ~ 8519203 (-)
G115732 NA non-coding downstream 233167 8430126 ~ 8433570 (-)
G115599 sept12,LOC107568113,LOC107690244,LOC107733855 non-coding downstream 798111 7860316 ~ 7868626 (-)
G115596 NA non-coding downstream 824029 7842337 ~ 7842708 (-)
G115580 NA non-coding downstream 923990 7742541 ~ 7742747 (-)
G115874 NA non-coding upstream 185065 8861873 ~ 8862377 (-)
G115949 NA non-coding upstream 523992 9200800 ~ 9215817 (-)
G116058 NA non-coding upstream 804102 9480910 ~ 9482152 (-)
G116065 NA non-coding upstream 850684 9527492 ~ 9527736 (-)
G116136 NA non-coding upstream 1107622 9784430 ~ 9788579 (-)
AMCG00018344 NA other downstream 17930 8641896 ~ 8648807 (-)
G115581 NA other downstream 892845 7743218 ~ 7773892 (-)
AMCG00018291 NA other downstream 2013964 6610633 ~ 6652773 (-)
G115320 NA other downstream 2715682 5950421 ~ 5951055 (-)
AMCG00018251 natd1,LOC107745813 other downstream 3299983 5356846 ~ 5366754 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 563004 9239812 ~ 9258202 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 1097498 9774306 ~ 9779545 (-)
G116165 NA other upstream 1242238 9919046 ~ 9924582 (-)
AMCG00018416 usp42 other upstream 1443791 10120599 ~ 10136769 (-)
AMCG00018424 tecpr1,LOC102784946,LOC103372311 other upstream 1626246 10303054 ~ 10332982 (-)

Expression


Co-expression Network