AMCG00018340 (LOC108274424)


Basic Information

Item Value
gene id AMCG00018340
gene name LOC108274424
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8687709 ~ 8688230 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018340
ATGGAGAAGGGCTTCCCGGGACTGGGGCGCTGCTCCTGCGCTTTCTGGCTGGCGATCGCCTTCGACGTCTTCGGGCTGGTGGTTCTGATGCTGGGGGTGTTCGGGGACTTGTTCTTCTACGACTTTCTCATCTACGCCGGCGCCATCGTCATCTTCCTCAGCCTCATTTGGTGGGTGTTCTGGTACACGGGCAACATCGAGGTGCCACCCGAGGAGCTAGAGGACGACGTCGGGCTGCTGAAGAGGAACAGGGGCATCTCCGGGCTGGTGAGGAGGCTGTCCAGCCGCCTGTCCAACGGCATCAGGAACTCCTTCAGAAGAACCAAGCGGGCCAACTGGCAGGGCGGGGTGCTGGGGGGCACCCTGCCCCATCAAACGGGCACAGGCCGGGACTCCGAGCAGCCGGTCCCTGTGGCACTGCCCATGGCTGCAGCAGGGTCCAGCTTACAAACCGTTTCTGCCACCATAGACAGTGAGGTGGCAACTAACCCACCCACAGCTACAGAGACATCGGCCATATAA

Function

NR:

description
PREDICTED: transmembrane protein 238-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018340 True 522 mRNA 0.62 1 8687709 8688230

Neighbor

gene id symbol gene type direction distance location
AMCG00018342 NA coding downstream 3061 8677864 ~ 8684648 (-)
AMCG00018341 clg6h16orf45,LOC101485480,LOC102775719,LOC108236367,LOC103355942 coding downstream 56121 8625877 ~ 8631588 (-)
AMCG00018343 NA coding downstream 84975 8597093 ~ 8602734 (-)
AMCG00018334 NA coding downstream 146670 8519603 ~ 8541039 (-)
AMCG00018329 coq7,LOC106564609 coding downstream 218080 8463319 ~ 8469629 (-)
AMCG00018347 NA coding upstream 5129 8693359 ~ 8698933 (-)
AMCG00018346 LOC104930119,LOC101486217,LOC102210124,LOC108246886,LOC106529451,LOC100701961 coding upstream 12181 8700411 ~ 8717402 (-)
AMCG00018353 NA coding upstream 136412 8824642 ~ 8905411 (-)
AMCG00018352 NA coding upstream 221517 8909747 ~ 8916027 (-)
AMCG00018362 NA coding upstream 502534 9190764 ~ 9192941 (-)
G115807 NA non-coding downstream 168506 8517334 ~ 8519203 (-)
G115732 NA non-coding downstream 254139 8430126 ~ 8433570 (-)
G115599 sept12,LOC107568113,LOC107690244,LOC107733855 non-coding downstream 819083 7860316 ~ 7868626 (-)
G115596 NA non-coding downstream 845001 7842337 ~ 7842708 (-)
G115580 NA non-coding downstream 944962 7742541 ~ 7742747 (-)
G115874 NA non-coding upstream 173643 8861873 ~ 8862377 (-)
G115949 NA non-coding upstream 512570 9200800 ~ 9215817 (-)
G116058 NA non-coding upstream 792680 9480910 ~ 9482152 (-)
G116065 NA non-coding upstream 839262 9527492 ~ 9527736 (-)
G116136 NA non-coding upstream 1096200 9784430 ~ 9788579 (-)
AMCG00018339 NA other downstream 10901 8666737 ~ 8676808 (-)
AMCG00018344 NA other downstream 38902 8641896 ~ 8648807 (-)
G115581 NA other downstream 913817 7743218 ~ 7773892 (-)
AMCG00018291 NA other downstream 2034936 6610633 ~ 6652773 (-)
G115320 NA other downstream 2736654 5950421 ~ 5951055 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 551582 9239812 ~ 9258202 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 1086076 9774306 ~ 9779545 (-)
G116165 NA other upstream 1230816 9919046 ~ 9924582 (-)
AMCG00018416 usp42 other upstream 1432369 10120599 ~ 10136769 (-)
AMCG00018424 tecpr1,LOC102784946,LOC103372311 other upstream 1614824 10303054 ~ 10332982 (-)

Expression


Co-expression Network