AMCG00018342


Basic Information

Item Value
gene id AMCG00018342
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8677864 ~ 8684648 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018342
GCCACTTTCAAAAGTCTTCCCACAAGCAGGAAGAGGATCTGGGAGAGCTACCAATTTGGCAGAAAATCCGCTTGAATTGAGAACAGTACGCCACTGCCCCTAGTGTCCGCATGCGGAATAGCTATATCTGTCCTGTTTCCATTATACTTGATTTACAGTTATACAAGACGTGACGAAAGAGCTTATATAATCAGCATTAACTCCTTATTAATATCAGTCGTACATGTACTTTGGGAAGTATTTGAAGACCTAGCACATCAACAAGAAGAACTGCTACCACAGCTGCCCAAGAACCACATCCAGTGTGGGGGCATGGAGGTGGACGGGGGAGAATTCATTAGCACCCCGCCGATGAAGACAGTGCGGTTCGGGGGCAGCGTTGTCGACATGCTGGACAAATTCAAACGGGGTGACGCCAGTGATTATGAACTTCTGAAACACCAGCTGTCAGACCCTGACATAAAGGATGCTCAGATTGTCAACTGGCTCATGGAGTTCCGCAACTGTGTGACCCAGTTGACCAAGGACAACGAGCAGTTAGTCTCTGTAATCCTGACCGTTTATCTCAGGTCATGCCTCAAAATGGTGGTCTCCAACTTCACACCAGGGAGAGTCCGTATCCGAGAGGGGGATGTCGATATTTCTGACTCGGATGATGACGACGAAGACCTACCCAGAAACTTTGACTTGTGTCATCGAGCCCTGAAAGTCATCAGCAACTATGTACCTTCGACCTCCCGGTTCCTCATGCCCATCCTGTCTGACAACTTCCCTTTTGTCCAGAAATCCCCCCGAACTCTGGAGTGCTACGTGCACAACCTCCTGCGGGTGACCGTGTACCTGCCCGCGCTGCGCAGGGATGTGCTGGAGCTGGTCTTCAGCAAGATGCTCAAGCTGGACGTGACCGCACCCCGGGCTGAGATCGAGGAATCGGAGGAGACCGCGGCACAGCAGGCCAGAGAGAACGAGGGGCTGCAGGAGGAGGGTCTCTTTCACATGGATGAAGATCAGAGTTTGGCGCCAGATCCTTCCTTCCAGGATGGGGGTGAGGCGATGGCACACCCAGTGGCAGAGAGACTGGACACCCTCATGGCCGTCCTCATGGCCTACATCAAGGACGTGTGCTTTGTGAACGGAGTCCTGGATCTTCCGTGCACCAAGGAGCTGTACCGCGACTTAATGTGTGTCTTCGACAAGCTGATTCTGCCCACCCACGCCTCCTACCACGTCCAGTACGCCATCTTCTACCTCTGCAGCTTCCGCCTGGGCCTGGCCGAGGCGTTCCTGGAGCATCTGTGGAAGAGCCTGCAGGACCCCGGTCTCCCTGCTGTCCTGCGCCAGGCTGCCGCATCGTACATTGGCAGCTTCCTGGCACGGGCCAACTTCCTCCCCACCGCCACAGTGAAGGCCTGTCTGGACCTGCTGGTGCCCTGGCTGCACCTGTACATCGACAACCAGGACGCCGGCTCTCGGGCCTACTGTGACGTGGCGCTGCACGGCCCCTTCTACGCCGCCTGCCAGGCCGTCTTCTACACACTGATCTTCAGGCACCGGATGATCGTGGAAGGCAACATGCGCAAGGGCCTGGCGTACCTCCAGATGCTGAATTTGGAGCGCATCGTGATGTGCCAGCTCAACCCCCTGAAGGTTTGCCTGCCCGCCGTCACCAATATCTTCGCTGCCATCACCAGGAAGTACCAGCTGGTGTTCTGCTACACTATCATCGAGCGCAACAACCGGCTGATGCTGCCCACTGTGCGGAGCGGCCAAGGGGGCGACTCCATGCCTACCAACACCAACCCCCTGGACAGCTTCTTCCCTTTCGACCCCTACCTGCTCAAGAGGTCGGGGAAGCTGATTGAGCCCCACTACCAGGCATGGGAAGAGCCCAGCGAGTGTGAGGTGGATGGACCAAAGAAGCTAGTCAAACAGGGCTCCACcgcagaggaggaggatgacTTCCTGCTGGGAGAGACACCCCAAAGCGACGGGGTAGTGGGCATGACCCCCGGCTCATACGAGTCTTCTCTGCAGAGCCCCAGCAGCGTGGGCTCTCCCCCCGTGGCTTTCCTGCAGCGCCGCTTCTGACCACCCTTGTAGGACACTCTACAGTAATCTGCCAGTGAGCTTCTTCCTAACCTCAGTCAGGCTTTGTTCACCAAAACGGCAGCTGTAGATGGAGGCCACAAGGCCAGGTGCATCCGAAAACAAAAAAGGCGCTGCAGTATCGGGTTGCCACAAAACTGTCCCTTTTATCACCAGCTCTGGGGCGCCCTGATAATCTGTCAGTGCCATTCTCTTCTTTCTCCTATCTCTGAATGAGATCACCTTTCACAGCGATGATATGCTGCCCCAGTTCCTGATTCTGGGAGTCTGGGAGTGTGTTGGTGAGCAGGGGAGAGAGGAGCTACCTGCCAGGTTCAAGGGGGGAATGGGGAAAATCTCCTCTGAAAGCAGGCCTCGATGCAAGGCCCAAAGCAGACTTACCAGCTTTCAGTTATCACAAATTATTTGTCCAAATTTACAGAGGCCATTCTTTTCAGCAAGAGGATCATCACATGGATTGAGTCTCTCTCTGCAtctatgtaaatgtgtgtatatgtaaatgtatctatatata

Function

GO: NA

KEGG:

id description
K15216 RRN3, TIFIA; RNA polymerase I-specific transcription initiation factor RRN3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018342 True 2620 mRNA 0.55 18 8677864 8684648

Neighbor

gene id symbol gene type direction distance location
AMCG00018341 clg6h16orf45,LOC101485480,LOC102775719,LOC108236367,LOC103355942 coding downstream 46276 8625877 ~ 8631588 (-)
AMCG00018343 NA coding downstream 75130 8597093 ~ 8602734 (-)
AMCG00018334 NA coding downstream 136825 8519603 ~ 8541039 (-)
AMCG00018329 coq7,LOC106564609 coding downstream 208235 8463319 ~ 8469629 (-)
AMCG00018331 NA coding downstream 228920 8443195 ~ 8448944 (-)
AMCG00018340 LOC108274424 coding upstream 3061 8687709 ~ 8688230 (-)
AMCG00018347 NA coding upstream 8711 8693359 ~ 8698933 (-)
AMCG00018346 LOC104930119,LOC101486217,LOC102210124,LOC108246886,LOC106529451,LOC100701961 coding upstream 15763 8700411 ~ 8717402 (-)
AMCG00018353 NA coding upstream 139994 8824642 ~ 8905411 (-)
AMCG00018352 NA coding upstream 225099 8909747 ~ 8916027 (-)
G115807 NA non-coding downstream 158661 8517334 ~ 8519203 (-)
G115732 NA non-coding downstream 244294 8430126 ~ 8433570 (-)
G115599 sept12,LOC107568113,LOC107690244,LOC107733855 non-coding downstream 809238 7860316 ~ 7868626 (-)
G115596 NA non-coding downstream 835156 7842337 ~ 7842708 (-)
G115580 NA non-coding downstream 935117 7742541 ~ 7742747 (-)
G115874 NA non-coding upstream 177225 8861873 ~ 8862377 (-)
G115949 NA non-coding upstream 516152 9200800 ~ 9215817 (-)
G116058 NA non-coding upstream 796262 9480910 ~ 9482152 (-)
G116065 NA non-coding upstream 842844 9527492 ~ 9527736 (-)
G116136 NA non-coding upstream 1099782 9784430 ~ 9788579 (-)
AMCG00018339 NA other downstream 1056 8666737 ~ 8676808 (-)
AMCG00018344 NA other downstream 29057 8641896 ~ 8648807 (-)
G115581 NA other downstream 903972 7743218 ~ 7773892 (-)
AMCG00018291 NA other downstream 2025091 6610633 ~ 6652773 (-)
G115320 NA other downstream 2726809 5950421 ~ 5951055 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 555164 9239812 ~ 9258202 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 1089658 9774306 ~ 9779545 (-)
G116165 NA other upstream 1234398 9919046 ~ 9924582 (-)
AMCG00018416 usp42 other upstream 1435951 10120599 ~ 10136769 (-)
AMCG00018424 tecpr1,LOC102784946,LOC103372311 other upstream 1618406 10303054 ~ 10332982 (-)

Expression


Co-expression Network