AMCG00018343


Basic Information

Item Value
gene id AMCG00018343
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8597093 ~ 8602734 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018343
CCTCAATCTGCCATCTGATTGGCTAAGAGCCGTCCGTAAACGCAGTGTCGTAATCGCCAGCCGCCCAATAGGAGCCGAGCTCGGCCTGCGCTGTGATGGTTTGGTTTTGGAGACGaCTCTGGAAGTTCCCTTGAAATCTAGCACTACAATGGGGGAACGAAACTTCGATTCTCTGAAGGAAGAGATGGAGTACTGGATGGACCAGGCTGAGAAGTACAAACAGAGTGCCAGCGAAGCAcaggaggagctgcaggagtTCCAGCAGATGAGCCGTGATTATGAGGCGGAGCTGGAAGCGGAGTTGAAGCAGTGCGAGGCTCGTAACCGTGAGCTGCTGGCCAATAATAATCGGCTGCGTATGGAACTGGAGAACTACAAGGAGAAATTTGAGGCCCAGCACTCGGAGGCTTTCAGACAGATCTCCACACTAGAGGGCGATCTTGCAGAGACCACGGCCATCAGAGATCAGCTGCAGAAGTACATCAGGGAGCTGGAGCAAGCCAATGACGACCTGGAGAGAGCAAAGAgGGCCACCATCATGTCCCTGGAGGATTTTGAGCAGCGCATGAACCATGTGATCGAGAGGAACGCTTTCCTGGAGAGTGAGCTGGACGAGAAGGAGAACCTGCTGGAGTCCGTGCAGAGACTGAAGGACGAAGCCAGGGATCTGCGTCAGGAGCTGGCTGTCCAGCAGAAGCAGGAGCGGAAGCCGTCTCTGAGCATGCCCAAGGACGGGGAGAAGAGCGATTCCCCTTCGCGGCCCCCCTCGGCCCTCCCCCCGCTGCCTTCCACCCCAGGAGGGCCACGCACTCCCGGCAGCTCCTTCACCACCCCACCAGCCTCCTACCGCCGTGGTGATGGGCTCACCGGCACTCCCCTCACCACCTCAGCCCGGATATCTGCACTCAACATCGTCGGGGAGCTGCTCAGGAAAGTGGGGAACCTGGAGGCGAAGCTGGCCTCCTGTCGAGATTTTGTGTACGATCAGTCTCCCGGCCGCTCTGCCCTCGCGTCCTGCACCGGGACGGCTGCCCCCTCCAGAGAGGGCCCTGAGAACCATCCTACCAACAGCAATCTGCAACTGTTCGACAAAGGGTGA

Function

GO: NA

KEGG:

id description
K16738 NDE1, NUDE; nuclear distribution protein NudE

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018343 True 1099 mRNA 0.59 8 8597093 8602734

Neighbor

gene id symbol gene type direction distance location
AMCG00018334 NA coding downstream 56054 8519603 ~ 8541039 (-)
AMCG00018329 coq7,LOC106564609 coding downstream 127464 8463319 ~ 8469629 (-)
AMCG00018331 NA coding downstream 148149 8443195 ~ 8448944 (-)
AMCG00018328 syt17,LOC107729446,LOC107658452,LOC107674134,LOC107564007,LOC107732856 coding downstream 174191 8409902 ~ 8422902 (-)
AMCG00018330 smg1,LOC107729485,LOC107564004 coding downstream 205953 8363373 ~ 8391140 (-)
AMCG00018341 clg6h16orf45,LOC101485480,LOC102775719,LOC108236367,LOC103355942 coding upstream 23143 8625877 ~ 8631588 (-)
AMCG00018342 NA coding upstream 75130 8677864 ~ 8684648 (-)
AMCG00018340 LOC108274424 coding upstream 84975 8687709 ~ 8688230 (-)
AMCG00018347 NA coding upstream 90625 8693359 ~ 8698933 (-)
AMCG00018346 LOC104930119,LOC101486217,LOC102210124,LOC108246886,LOC106529451,LOC100701961 coding upstream 97677 8700411 ~ 8717402 (-)
G115807 NA non-coding downstream 77890 8517334 ~ 8519203 (-)
G115732 NA non-coding downstream 163523 8430126 ~ 8433570 (-)
G115599 sept12,LOC107568113,LOC107690244,LOC107733855 non-coding downstream 728467 7860316 ~ 7868626 (-)
G115596 NA non-coding downstream 754385 7842337 ~ 7842708 (-)
G115580 NA non-coding downstream 854346 7742541 ~ 7742747 (-)
G115874 NA non-coding upstream 259139 8861873 ~ 8862377 (-)
G115949 NA non-coding upstream 598066 9200800 ~ 9215817 (-)
G116058 NA non-coding upstream 878176 9480910 ~ 9482152 (-)
G116065 NA non-coding upstream 924758 9527492 ~ 9527736 (-)
G116136 NA non-coding upstream 1181696 9784430 ~ 9788579 (-)
G115581 NA other downstream 823201 7743218 ~ 7773892 (-)
AMCG00018291 NA other downstream 1944320 6610633 ~ 6652773 (-)
G115320 NA other downstream 2646038 5950421 ~ 5951055 (-)
AMCG00018251 natd1,LOC107745813 other downstream 3230339 5356846 ~ 5366754 (-)
G115183 NA other downstream 3292664 5300107 ~ 5304429 (-)
AMCG00018344 NA other upstream 39162 8641896 ~ 8648807 (-)
AMCG00018339 NA other upstream 64003 8666737 ~ 8676808 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 637078 9239812 ~ 9258202 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 1171572 9774306 ~ 9779545 (-)
G116165 NA other upstream 1316312 9919046 ~ 9924582 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location