AMCG00018347


Basic Information

Item Value
gene id AMCG00018347
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8693359 ~ 8698933 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018347
ATTTGCGCATGCTCGCAACCGCTGGGAGACACGTGTGGAGGGAGACAGCATGGCGGCGGAACAGGCGGCGGACTTCGAGCTGGACAGAGCCCAGgtgAAGAAGGCAGTACAGGCCCTGCAAGCCTTCCTGAAGAGCTCCTCCACTTCAGAATCGCTCCTCCTCAATGACAGCAAGCACATCTCCCTGCTCTTCACCCTCTGGAAGATCTCCAAGACCGAGCAGACCATCCGGATCCCCTTGCCTCATGGCCTACGTTCGGACAACGGGGACGTCTGTCTCTTTGTCAAGGACGAGCCCAACATGACCACCGATCAGACGGAGAGGTTCTACAGGAAATTGCTCACTGAGAAAGGAGTGAAGGGCATCACACAGATCATCCCTTTCAACATCCTAAAGAAGGAATACAAGCCCTTTGAAGCCAAGAGGAGGCTGCTGGGAAACTTCGACCTCTTCCTGTCCGACTCTCGCATTCGCCGGCTCCTGCCCTCTCACATCGGGAAGCACTTCTACCTGAGCAAGAAGGCTCCTCTCTCTGTGAACCTGCAGGCCAAGCAGCTGGCCCGAGACCTGGAGCGCCTCATCCAGGGCACCACTCTGAGCATCTCCAACAAGGGCTCCTGCTGCATGGCTCGCGTGGCGCACTCCGGGATGTCTGTGGACGAGGTTGTGGAGAACATCTCTGCGGCCGTCAGCACCATAGCGGAGAAACTGCCCGAGAAAGGAAAGGGAATCAAAATCATCCACCTGAAGAGCCAGACTTCGGTGGCTCTGCCCATCTACACTTCCAGCCTGAAACGCCTGTCGCTGCAAGCCAGTGATGTGGGGAGCTCCAGTCCACAGAAAATGAAGAAGGTAGGCAAGCAGAAGGGCAAAAAGGGAAAGGTTGCAAAGGCAGAGCCTGGACAGGAAGTGGAGGAGGTTCCACAGTTGGTTACTATACAAACGCCCTCCAAGAAGGCCAAGCTTCAGACCCCAGCAAAGAAAGCATTTGAGAGTGCACCAAAGACTCCAGTTAGAAATAAGAGTGCCCGGTTGTCTGCAGGGGCCCCTCCCGAGACCCCCAAGGAGGGCAGGGTGCTGAGGACACCAGGCAAGAAAGCGAAAACCGTGAAGACTCCAAAGAAAGCTCTGGCAGAGGAGGCAACAACTGTCAAGACACCCGCGAGGAAAAAGAAGGGAGCCCTGGCAAAAACCACACTGGCCAAGTCCGCCAAGAAAGCACCCAAAACTCCTGCGCAGAGACTGAAGAGAAAAATCCCCCAGTCGTGTTAATATTACCGACAGGCTTCCCATGAACTCCTAACCCAGCTGGGATAAGGGCTGAGGAAGgaggttttaaaaaatgcaaacctcTGTACACAAGCAACCTCCCCTCTTGCATTTAGCAACATGATGATTTGACAGGCAAAGCACAGGAGAGCAGGGCCGTGTGCTTTAGAAATTGTAAAGCAGGGGACGGCACCTGAAATATGCAGGACTCGAAAGAAATAAACCCTTTTATATATCCAAGATTCTTCATTCTTGCATAAACGATACGGTAATGTTTTAGTAACAGTTAAGCCTGatgtattcttgtttttgtacatgACTAGTTTGAGTTCCTATAGCAACTGAAAATGTGCTCTGCTCTAGGAAGGTGTTTAGATAAGAGTTATGTACCGGTCTACtaatgcactgttaactgtggctGGGAAGGTTGTGCAGTTAGAAACCTTCATAGGCAGAGCTGATACCATCTCTCACTAGGCAGTACCAGCTTTGATTCAGGATTTGACTAACATTTCTACTTGTTTAACCCTGCTCTGGAACCATGAAAAAAGTGACATTGACAGtaccattggggtggggtcacagagaccccatggtaccacagcagggttaaggagaaaaaaaagctatCCATTGAAAGatgcaaataaatgttgtcCATTTAACTATTTGTTAGTTTCCTGTTCTGTAAAATccaagttgtaaaatgtattttatattgcagaAGCATGGACTCCCTCTAACTTGTTAGATTGGAATGTGCTTGTGCAAGAAATATACTTTAATGTGCAGTAGTCGATCGTAAATTATTTTGGC

Function

GO: NA

KEGG:

id description
K14775 UTP30, RSL1D1; ribosome biogenesis protein UTP30

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018347 True 2086 mRNA 0.50 9 8693359 8698933

Neighbor

gene id symbol gene type direction distance location
AMCG00018340 LOC108274424 coding downstream 5129 8687709 ~ 8688230 (-)
AMCG00018342 NA coding downstream 8711 8677864 ~ 8684648 (-)
AMCG00018341 clg6h16orf45,LOC101485480,LOC102775719,LOC108236367,LOC103355942 coding downstream 61771 8625877 ~ 8631588 (-)
AMCG00018343 NA coding downstream 90625 8597093 ~ 8602734 (-)
AMCG00018334 NA coding downstream 152320 8519603 ~ 8541039 (-)
AMCG00018346 LOC104930119,LOC101486217,LOC102210124,LOC108246886,LOC106529451,LOC100701961 coding upstream 1478 8700411 ~ 8717402 (-)
AMCG00018353 NA coding upstream 125709 8824642 ~ 8905411 (-)
AMCG00018352 NA coding upstream 210814 8909747 ~ 8916027 (-)
AMCG00018362 NA coding upstream 491831 9190764 ~ 9192941 (-)
AMCG00018363 snrnp25,cp033,LOC106601091,LOC101481050,LOC107703331 coding upstream 495105 9194038 ~ 9199468 (-)
G115807 NA non-coding downstream 174156 8517334 ~ 8519203 (-)
G115732 NA non-coding downstream 259789 8430126 ~ 8433570 (-)
G115599 sept12,LOC107568113,LOC107690244,LOC107733855 non-coding downstream 824733 7860316 ~ 7868626 (-)
G115596 NA non-coding downstream 850651 7842337 ~ 7842708 (-)
G115580 NA non-coding downstream 950612 7742541 ~ 7742747 (-)
G115874 NA non-coding upstream 162940 8861873 ~ 8862377 (-)
G115949 NA non-coding upstream 501867 9200800 ~ 9215817 (-)
G116058 NA non-coding upstream 781977 9480910 ~ 9482152 (-)
G116065 NA non-coding upstream 828559 9527492 ~ 9527736 (-)
G116136 NA non-coding upstream 1085497 9784430 ~ 9788579 (-)
AMCG00018339 NA other downstream 16551 8666737 ~ 8676808 (-)
AMCG00018344 NA other downstream 44552 8641896 ~ 8648807 (-)
G115581 NA other downstream 919467 7743218 ~ 7773892 (-)
AMCG00018291 NA other downstream 2040586 6610633 ~ 6652773 (-)
G115320 NA other downstream 2742304 5950421 ~ 5951055 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 540879 9239812 ~ 9258202 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 1075373 9774306 ~ 9779545 (-)
G116165 NA other upstream 1220113 9919046 ~ 9924582 (-)
AMCG00018416 usp42 other upstream 1421666 10120599 ~ 10136769 (-)
AMCG00018424 tecpr1,LOC102784946,LOC103372311 other upstream 1604121 10303054 ~ 10332982 (-)

Expression


Co-expression Network