AMCG00018350


Basic Information

Item Value
gene id AMCG00018350
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8932090 ~ 8937602 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018350
ATGGCTGTGTGCTGCGCATTGGGGATATGCTGCTTGGCTTCCTATGAGACCAGGTCGTCTTCACgttcccttttctttctctcgATCACCGTGCAAACCAAATCTGACCAAACGGGGTACAGGATGAAAAGTACCGGGTTGCTGCTTGGTTACTTTTTGGTGAAAGTTTTGGCGCTGCTCTGTAACGCCGAGGGAGAATCCGGGCTGCAGCTGGAGAGTTTTGTGATGGTTCCTGGCGCAAACGCGTCCAGAGACGGAGATAACGGGTTTTCAGACGCCCCGCACACGGAAGACAGGTGTCGGGGCTATTTCGACGTGATGGGGCAGTGGGATCCGCCGTTTATCTGCAAAACGGACAAATACCTGTACTGCTGCGGCACCTGTGGCTTCCGTTTCTGCTGCGCGTTCAAGAGCTCCCGGCTGGATCAGAGCACCTGCAAAAACTACGACACCCCCTTATGGATGCAGACCGGCCGACCCCCCTTCAAGAAGAACGACCCCGCACACGACCCCACCAAGGATAAAACCAACCTGATCGTCTATATCATTTGTGGAGTAGTGGCTATCATGGCACTTGTTGGGATATTCACCAAGCTTGGACTGGAAAAGGCGCACAGACCTCAGAGAGAGAACATGTCCAGAGCCCTGGCCCACGTGATGCGCCAGCCGGGCCCGGGTCCGGGGGAGCCGCTGGAGCGCGAGGACGGCCTCGGCGTGCACGCGCAGCACTACGAGAACCTGCAGGCGCGCGCCACGGCCAACAACCTGCGTGAGTGA

Function

GO:

id name namespace
GO:0048172 regulation of short-term neuronal synaptic plasticity biological_process
GO:0032591 dendritic spine membrane cellular_component
GO:0045202 synapse cellular_component
GO:0008328 ionotropic glutamate receptor complex cellular_component
GO:0030054 cell junction cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018350 True 777 mRNA 0.57 2 8932090 8937602

Neighbor

gene id symbol gene type direction distance location
AMCG00018348 snx29,LOC107554039 coding upstream 84906 8813019 ~ 8847184 (+)
AMCG00018349 NA coding upstream 121616 8783629 ~ 8810474 (+)
AMCG00018345 snx29,LOC107554010 coding upstream 200162 8718740 ~ 8731928 (+)
AMCG00018338 NA coding upstream 265431 8650411 ~ 8666659 (+)
AMCG00018337 NA coding upstream 285982 8643855 ~ 8646108 (+)
AMCG00018351 NA coding downstream 13 8937615 ~ 8941636 (+)
AMCG00018354 NA coding downstream 82401 9020003 ~ 9021898 (+)
AMCG00018356 NA coding downstream 186711 9124313 ~ 9130120 (+)
AMCG00018357 NA coding downstream 218579 9156181 ~ 9156453 (+)
AMCG00018355 NA coding downstream 224884 9162486 ~ 9187759 (+)
G115875 NA non-coding upstream 61748 8868542 ~ 8870342 (+)
G115873 NA non-coding upstream 69579 8862081 ~ 8862511 (+)
G115796 NA non-coding upstream 227187 8703157 ~ 8704903 (+)
G115678 NA non-coding upstream 559263 8352077 ~ 8372827 (+)
G115679 NA non-coding upstream 584254 8294416 ~ 8347836 (+)
G115896 NA non-coding downstream 98728 9036330 ~ 9036583 (+)
G115931 NA non-coding downstream 261275 9198877 ~ 9199440 (+)
G115939 NA non-coding downstream 290408 9228010 ~ 9230141 (+)
G115990 NA non-coding downstream 499430 9437032 ~ 9437303 (+)
G116002 NA non-coding downstream 534895 9472497 ~ 9477108 (+)
G115789 NA other upstream 237371 8693364 ~ 8694719 (+)
G115648 NA other upstream 809919 8119778 ~ 8122171 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other upstream 1037641 7893627 ~ 7894449 (+)
AMCG00018280 NA other upstream 2184652 6710482 ~ 6747438 (+)
AMCG00018272 NA other upstream 2771474 6155488 ~ 6160616 (+)
AMCG00018358 polr3k,rpc11 other downstream 262055 9199657 ~ 9206776 (+)
AMCG00018360 f100a other downstream 302209 9239811 ~ 9245234 (+)
AMCG00018368 NA other downstream 502055 9439657 ~ 9447144 (+)
AMCG00018369 NA other downstream 543350 9480952 ~ 9486146 (+)
AMCG00018374 NA other downstream 574712 9512314 ~ 9513236 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_00893353_00931079 SHISA9B coding CI01000046 null 893299 ~ 932443 (+)