AMCG00018353


Basic Information

Item Value
gene id AMCG00018353
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8824642 ~ 8905411 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018353
ATGCTGTGCGAGAACTGCAATTATGAAATCCTGCTCGCTACACAGATCCCCAGTAGAATACCGGAGAGCACCTTCCAGGAAGATACTGGTACGCCTTGGCGGCAGGAGCAGGAGAGGGACCTGAAGGGGGCGCTGAGAGGGACGGATCCCAGCATCCCGCTGATCTTCCTGAGTGGGAATCACGACATCGGCAACACGCCCACACCTGACACCATCGCGCAGTACTGCAGCAGCTGGGGAGACGACTACTTCAGCTTCTGGGTGGGCGGGGTGCTGTGCCTGGTGCTCAACTCCCAGCTGTTCTTCGACAGCTCGGCCTGCCCTGACCTAAGGGATGCCCACGAGGCCTGGCTGGTGGAGCAGCTGGAGAAGGCCCAGAGCAAGGCCTGCCGCCACATCCTGGTCTTCCAGCACATCCCTCTGTACCTGCACTCCCCCGAGGAGGAGAACGACTACTTCAACCTGGAGAGGGGCGTCCcAATAAAATATTGTGAGAATCGAACAAATACAGAGTTATCAAGGgatgcttttgttttagtgCTCAACATAACTGGGATTGGGCAGCACTGGGCCAGCCGCTGGGCTGCCGGAGTGAAAGCCGTCTTCTCTGGACACTACCACCGCAATGCCGGGGCAGTTAACGACGGCTTGGACATGGTGGTGACTTCTGCGATTGGCTGCCAGTTGGGGACGGACCCCCATGGCCTGAGAGTAGTGGTGGTGACCGAGGAGAAGGTGGTCCATCACTACTACAGCCTGGAGCAGCTCATTGCGGATGAGTGCATTGTCCTCCTTGGTACTCTGCTGAAGTGGGTGTTTGTTCGATGCCAATTGGCGGAACAGGAGAAGAGTGAGTTGCTATGGAAACGGATCAAAAACAGAGCAAAAATGGCCGGGACAAGGCGGCAGCTAGGGAGCTCCATCTGCGGCTCCACGGTGCTCGGCAGCCGTGAGTTTCAGCCGGCCTGGCCCGGAGCCCTCCTTAAAGAGACAGCCGCACAGGGAAATATCATTGTGATGGATCTCATACGAGAAGGAGGCCGTAATCTGATCAACGTGGCACTGGAGGAAAGGCAAAGAATTCGCTCTCAGGGAGAGGAGAGTGGTATAAACAGTATAGGTAGCCACGGCCCCTATCTGGGAGAAATTTGGGCACCTACAAGCGGAGCAGAAAATGGGAACAACCTGGTGGGGACGGCAGGAGTCGAGACGatCACTGCAGCTGATGTCGCAGAGCACaacctccatctctccctctggCAGAGTGCGCAGCTGGGAATCGGGACCGGGCTCTTAAGCCACGGgaaaaggtcagaggtcaccaCTCTGGGGCTCCGGGTTTCTTGCTTCTCTGTTCTGATTGCGACTGAGTTTTGGGAACCTGGAGCCCACTCGGGTCTGAGCCTGAGATCCTGCAGATGTGCTAAATCTAGGTACAGTGTGAGCCAGAAAGCCATCTGGTACACAGAAAACCGCTATGGCCATGCCACCATTAGCACTGCCATGGGAGAACCCCACATGCCTGGCAAGGCTAGCGTCCGGCAGAAGGGAAGCAGCTTCAGCAGGGTCTCCTTGGTGGGACAGGCCGTGAACTCCGGCAGGCTCTGGATCAGCTTGTTCATCACGCTGCGCAGCTGCTTCCGGCGCTCCTCCACAAACTTGGCATCCTGCAGACACACACGACACGGTGAGACCCGCGATCAGTGGGCACCCCTGGTCACACAGACACCCAACCTGCAGCACACTAAGAGAATCTGGCTGGTAGTGTTCATCCCAATAGCAAAGACCCTTGCTCAGCAGacattcctttgtttttctgtcaagAAGGAAGCCATCAAAGGATACCCCTCCAACAGAGTGGAGCTTTAA

Function

GO: NA

KEGG:

id description
K21814 CPPED1; serine/threonine-protein phosphatase CPPED1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018353 True 1869 mRNA 0.57 18 8824642 8905411

Neighbor

gene id symbol gene type direction distance location
AMCG00018346 LOC104930119,LOC101486217,LOC102210124,LOC108246886,LOC106529451,LOC100701961 coding downstream 107240 8700411 ~ 8717402 (-)
AMCG00018347 NA coding downstream 125709 8693359 ~ 8698933 (-)
AMCG00018340 LOC108274424 coding downstream 136412 8687709 ~ 8688230 (-)
AMCG00018342 NA coding downstream 139994 8677864 ~ 8684648 (-)
AMCG00018341 clg6h16orf45,LOC101485480,LOC102775719,LOC108236367,LOC103355942 coding downstream 193054 8625877 ~ 8631588 (-)
AMCG00018352 NA coding upstream 4336 8909747 ~ 8916027 (-)
AMCG00018362 NA coding upstream 285353 9190764 ~ 9192941 (-)
AMCG00018363 snrnp25,cp033,LOC106601091,LOC101481050,LOC107703331 coding upstream 288627 9194038 ~ 9199468 (-)
AMCG00018361 cdip1,LOC100712532,LOC103374307 coding upstream 302126 9207537 ~ 9217538 (-)
AMCG00018367 NA coding upstream 454889 9360300 ~ 9380160 (-)
G115807 NA non-coding downstream 305439 8517334 ~ 8519203 (-)
G115732 NA non-coding downstream 391072 8430126 ~ 8433570 (-)
G115599 sept12,LOC107568113,LOC107690244,LOC107733855 non-coding downstream 956016 7860316 ~ 7868626 (-)
G115596 NA non-coding downstream 981934 7842337 ~ 7842708 (-)
G115580 NA non-coding downstream 1081895 7742541 ~ 7742747 (-)
G115949 NA non-coding upstream 295389 9200800 ~ 9215817 (-)
G116058 NA non-coding upstream 575499 9480910 ~ 9482152 (-)
G116065 NA non-coding upstream 622081 9527492 ~ 9527736 (-)
G116136 NA non-coding upstream 879019 9784430 ~ 9788579 (-)
G116236 NA non-coding upstream 1238014 10143425 ~ 10144599 (-)
AMCG00018339 NA other downstream 147834 8666737 ~ 8676808 (-)
AMCG00018344 NA other downstream 175835 8641896 ~ 8648807 (-)
G115581 NA other downstream 1050750 7743218 ~ 7773892 (-)
AMCG00018291 NA other downstream 2171869 6610633 ~ 6652773 (-)
G115320 NA other downstream 2873587 5950421 ~ 5951055 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 334401 9239812 ~ 9258202 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 868895 9774306 ~ 9779545 (-)
G116165 NA other upstream 1013635 9919046 ~ 9924582 (-)
AMCG00018416 usp42 other upstream 1215188 10120599 ~ 10136769 (-)
AMCG00018424 tecpr1,LOC102784946,LOC103372311 other upstream 1397643 10303054 ~ 10332982 (-)

Expression


Co-expression Network