AMCG00018358 (polr3k,rpc11)


Basic Information

Item Value
gene id AMCG00018358
gene name polr3k,rpc11
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9199657 ~ 9206776 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018358
AACACACAGACTGTGCGGCTGTCAGGCGTGTTTCTGGCTTCGTTTCTTTTAagacttgtatttgtatttaattttttctaaaTACTTTTGATTGAAGGGTTCATTATTATCGACATGTTGCTGTTCTGCCCGACttgtggaaatgtgttgattgtAGAAGAGGGGCAGAAGTGCTACCGATTTGCCTGTAACACTTGTCCATATGTGCACAACATTACGAGAAAGGTCACCAACAGAAAGTACCCCAAGCTGAAGGAGGTTGACGACGTACTGGGTGGGGCGGCGGCCTGGGAGAACGTGGACTCCACGCCAGAAACTTGTCCGAAGTGTGAGCACCCTCGGGCTTATTTCATGCAGATCCAGACGCGCTCGGCCGACGAGCCCATGACCACCTTCTACAAGTGCTGCAACCAAATCTGTGGGCACCGCTGGAGAGATTAAACTGCTGATTTCAATTCCCGGACTCATCTCCAGCTGCTATTCAGCCCCGCTGTTTTCAAGTGTCGAATAAGGTTTTATTTGCAGTATAATGCTTTAACACCTAGAAGTGAGAACTGTTATTGCAATACAACCAGGAAGATGTTGAGAAACCATAcgagtttttgtttgtttgaccaAAATCCCACTTCCATACTTCAATGAAGGTATGCATCAAAGCCTGCTAAGTATAATAAAGAGTAAATCGTCACACACTGTAATCCCAGTAATGGTCTAAACAGGGATTGTGTGTAACAGGATGATACCATCTGATGGAATTGGAATtgggtttgctttttttgttttttaaatctgtgataGATGGTAGTCCAGATGGGAGGCTCAGAACAACGCTTTCATGCTATTGAGATGAAGGACAGACGTTGCAGCTTTAGTACCTTGCAATTATGACTTCATggatgcaaaaaatatatattaaaaataaacgtGTCAAAGATTGTAATGAGTAATATGAGAGTCGTGTATGTATATTATCGATCTACCTAATACAATTCCTAGTCTTTTTTTGCCTTAAACAGAAGGATTATATTTACTACAAGCTGCTAGAACTTGATATACCTAGGTCTcagtgtttcaaataaataattgaaatgcattacaagaaaaagaagcataacattgattgttttgtttttattattgttaaaagaataattttgtattctatGCAACAGTTGTGGTCATTCATTTTACACAATAGTATAATTTACATGTCAACATCAATACAAACATGGAATACCATGGATTGGATTAAAGATATTAATATCTGTGCCTCTTCAACCCAGCAATAACTTTACTGCCTTTCCACAAGACTGCAAGCCACTTAATGTTGCATATAGAGAGGTTTAGAGCTTACAAAGTCAATGGGGACCAGCCTGGATTTGCAAATATTCATAAAAAGCATGAACATGCACTGCAAGTTACAGACAATGTTTACTAGATATCATAATCAGATTTTTCATCAGGTGCAGTTGATAGGATTCCTGGATAGTTCATGCTGGATAGTTAACaacagcaattattatttagaaaataaatacattacataaataaataaataaattacttaacactggaaactgttttaaaaataaaataccaaaaataaagcTCAGCGGGTTATATTTAGGTATCCAACAGTCAAAAATATCTCTATAACCCTTAATCTTAAGAAATACACACTGGGAGGTATAGCAACctctttttcctttatttcaccTTATTTCTAGAAACTGATTCAAAAAGACTTGGTATAGTCCACAGTTCCAGCTTGACCACcttagatatgtgtgtgtgcttgcacTGCAACTGAAAGTTAGATCAATTTGAAGTTGGCATCTTAAAATGCTGTAAGTACTGCTGATGGAAGCACAGAACTACAGAGTGAACCGAGTCAAACTCAACACCGGATGTTGATCTAGCGAGATTAATTGATGATTGAATatcaaatacagtaaattaagTCTTACTgtagaaatattttgtttctagaAATTATTAGTTTTGTAACACAGCAGGACAAAAACAATATGGCATTCCAAAACCCTCTACAACATTGCAGTTTGTCATATCCAGTAGACTCCATATTTTAGTGCTCCCGTCCCATACATTATTTAAGATATACTTCCAATGGATATGTTCCATTGACAGTCGatgcattatacatttacaacttCTTACTTCTTGGACTGCAtactatatacattatacagGTGGGTTAGGGGTATCGAAGGCGGTGAAGTTGAACGCTTGAACACTTAATATGAAAACTCAAACTTCACTTGGCAATAAGCAATTGCAGCCCATGGCAAGAAcgaaacaattaaaacagacaatttACAGCCAGCGTCCTCTGACAGGGGAAACCCTGCGGGCTCCATATTCGATTTAAGAAGAGGATGCGCTACCAGCGATCTTCAACGGTATGCGCCTGCAGGATTGGATCTTTAATTCACAAAGTCAGCCGTGTCAGGTCAAGTTCCATGAGACAGGTCTGCAAATGGAGATCGGTTCAAGTGGAGCCTAGGTTCTGAGCCCACAGTTCTAGACCACCTTGTCGTGAAGTAAATAGCAGGCTTTACACAAAGCTGGTGAGTAGGCAGCCtgcagggggggagggggaaggcACAGACAGAACTGCTCTACACAGAGACGGACGCGACAGTGaatgtcatgtgtgtgtgtgtgtgtgaggagacAATGCTAGAGTGGAGGGCGACAGAAACACAAGTTCTTCTcagactaaaaacaaaaacaaacgcaGCCGAGTCTGAGAAGAGCACggctgtacattttatttttttgttttcgtttttttgtttaaacattaccATTGGTATGTAGAAAACCACGACAGGTATTATTCACAACACAAGTAGCAAAAAAAGCGTGGCTGATTAGTAACAGATGTCTATTAAAGAGATCTTGTGAATCCACCTGTGGCGTTAATGATGAAACCTCCCGATTTTCATTTCAGGTGCAAAAAGTAGATATAAACCTAGCACAATGGTGAATACCCTTTCACTTCTAGCTGGTAGGTCTTGACCTACATCACATTCATAATTAACTAAAACCTCAGTGGTAATCAAGGGTGCTTTTGGATGCTAACGTAGCTCTGTGAATGTCATGTTCACCAACCCCACCTGAGTAAAGCACTTTCTGATTCTCTTTAAGACAGATTTTGGTTCtctatataaagtatataaaacAGACATCCTCCACCACCTGGATTTTAGTGGTGGTCCTCAGTGAAAGACCCAAAACAGAGGAGCAGATATTTAGCGGTGAGGCCTAACAGATGAAAATGTCACACCTTCTACCGAGGGTAAGCACTGCCTCAGTAAGAAAGCGTAATGTCGAGGTCTCTCCCAGGATCTGGTACCCGTTAAgaaggcttttgtttttagtgtACCTACGGCAAGCGACAGGGACAAACAGTATGTTAAAAAACAGTTCCCATGCTAAGTGTACTATGAATCAGTTACAGCAAAAGACaaggaaatatatacattataacacaatcattattttaaaattccatGAGGGCCTATGCTTATTGTCCACTTTCATTATcaacagtataaaaaaaaaacaagaatatgaACAGGCTGGTCAGTAATCTCCCTTGAGCCTATGTGGCAAGACGCAGTGAACAGATGCTGAACAGGGCAGTGCAGTCAGTGACACACATTAGATTCACCGCACAGACTGGACATATGGCGAGAGCAAAGCCTGCACCAGATTATAATGATGTCATGCAGGGGGGCAGGATGGCATGACAGCTCTCATGCAAATTTACTTTTACAGCAGAAGAGGTCTGTCCTTGGTCACAGTTAGGGTTTCCACCTGAACAGTTACCGTGAAGAAATGCTTTTAACTACTTCACTTGTGCATGCTTTCTGAAAAGATGTTTCAGCCCTGGAAATCACTATCAGACTGGTGCAAACTATGtccattaatatgaataattgaCTGAATGGAAGCATTGCAAAAATAGTACATCAAGTCAGATGGCTGATTGTGTACATGTTGTATCATTTTCATAAACAGAATCAAAAGGAACAGGCCTGGGAATCAGTAGACAATCAGTCAACACAAGACCAAAACATTCCTGTGGCCATCCttcttacaattaaaaaactgttttacatgATGAATAACATCTTCTACAGATCTCGGTGACTTTTCCATTATAAAGTACACAAAGTCGCAGTGTTTGTTGGTATGAATTAAAAAGGCCTTGAACACTTAGCAGGCGCCAGTTTTTACTAACCCTGAACTGAATTGTCACACTCACTACTGGCTCTCCTTTTTACCCCGACTGAAAAATATTCAAACAGGAGACCACGCCACAACAGAAAGGTCCAGTGGGCTCCCCtacttaaatacatattaaacatattaaacaggAATAAACAAGACCGAACGTTACAGAGCACAACACGTCtgcttaaaacaaataacagaaatattaaaatgcccACAAAAACAacgaaaacataaaacaaacaggacaGGACTTTACTGCACAATTAACTGGTACATCTTCATGTCATAGCTGCTCTCAAAGTTCCTTCCCTTAGTGCCGGCATTTTCAACCCTGTTCCCCTGTCTCTCCTGGTTTCTTTCTACCTCAGCTCACAAATGCTTATGTGAACTCTTAGTTAGAGTTGCTGACTGACTGTCTTGTAGTGCTGAAACAGCTGGGGAGTTCAGTGTACATGTAAAACTACCATAGGAGTGACttgaaattaacttttaatGGGCTGAAAACAGCTACAAAAGTCTAATTAGGCCAACAATGAGTTCAAGGGAAGTTTTGATGAGGGAAGTTCAGCTGGAACAACCAGCAGGCAAACGAGTATGAGCACGAGCACGGTTGTAAAGCCCATTCATTATTGCATATATATCTTCTTGCTCTAGGTATTaaaatttcaaatgcaaaacgAAGTGAAAGACTGGctggtatttgttttcatttgaatactaacaaaacaaaagattaaTCTCTAGcagtcattattatatattttagttatcTAATTCTTCCAaagatcttttttttatgtctacTCTAACAGAGAACAATATACTTTAGTAAACATGCTGGTGAAACAATTAGCAGGTGGATCTTCAATCCAGATTCAAAGAGCTGCACTGCTTGATGTCAAACACAGTCTTCTGCATCAGGACTCATTACCATCTCTAACCTGAAACACTAAATTGTGCAACCCACaggaacaattaaaacaaaggttttaaacatgtcaaaataaataaatctcaggTTCTTCCTTCACTATTTTAACAGTAAGTTATACTTCTACTAACATTATGTTTGCAGCAGGACTGATGATGTCACTAGCTAATTtgctgttctttgttttttgtatatgcCAAAAGCCCTTAATATTAAGatcaaaaacatgaaacaatcTCATTATGATATGCTGTCAGGGtgatgtgtgtatgcatttcacAACCACATAAGCCAGTTGTTCAGTTAAGAGAGTCATTCGGAAATAAACACCACATTTttttcaacaacaaacaaaaaacgctTGTGTGTGACAATGCGTCTGCTCTCGTCAGGTGAATACAAGTGGATGGCCCTTGTTGCTGGTCTTCATATTAGTGTGGGATTCACATTTGAGGCCACACTGCTATATGATGTGGTTTACAATTTGAAAATCGTGCCCTGTACCGCTATCTCTGCTTCAGTCCAACATACACTATATTACCTAAAGTGTTGGACTAGAAAAACAAGTTCTGTTCACAAAACACCAGTTGGTACCCAATGTCTGACATCATCCTGTGGATATACTGGGCCATTCCTCCCACAGGGCAGAAGTCCAGTCCTATACAACCAGAGCCAGGCTTGTCCAATGACTTAAGGTAACAGTGTATACTGGATCCAAAATAATCTGCCTGAATGAGAtagactttaaaaacacactgacacgGGTGGAAACTCCCTCTGAACTAAATCCAGCTGGAATTCATACCTCTGAGCACTAACCAGAGACGGACAGGGACATCCCTTTGAAACAGTTGGTTGCTTCCCATAAACTACCTTCTCAAAAGAATTAGATGAACTTGTGGAGATGTAGTTATAGAAAGATTCAGGTCctacacaaaacaatcaaaaacaactaataaaattaaaatattgccaATACTACTGTATCAAGGTGCAATCGGTTTCAGTTCACGccacaatatacagtactgtgcgaaagttttaggcaggtgtgaaatgctgtaatgtaagaagaatgctttcaaaaatagacat
>TU145182
GCAGTACAAGAAACATCCTATAAGTCATTGTTTCAGGGCGGACCCATAAGGATGTAACACACAGACTGTGCGGCTGTCAGGCGTGTTTCTGGCTTCGTTTCTTTTAagacttgtatttgtatttaattttttctaaaTACTTTTGATTGAAGGGTTCATTATTATCGACATGTTGCTGTTCTGCCCGACttgtggaaatgtgttgattgtAGAAGAGGGGCAGAAGTGCTACCGATTTGCCTGTAACACTTGTCCATATGTGCACAACATTACGAGAAAGGTCACCAACAGAAAGTACCCCAAGCTGAAGGAGGTTGACGACGTACTGGGTGGGGCGGCGGCCTGGGAGAACGTGGACTCCACGCCAGAAACTTGTCCGAAGTGTGAGCACCCTCGGGCTTATTTCATGCAGATCCAGACGCGCTCGGCCGACGAGCCCATGACCACCTTCTACAAGTGCTGCAACCAAATCTGTGGGCACCGCTGGAGAGATTAAACTGCTGATTTCAATTCCCGGACTCATCTCCAGCTGCTATTCAGCCCCGCTGTTTTCAAGTGTCGAATAAGGTTTTATTTGCAGTATAATGCTTTAACACCTAGAAGTGAGAACTGTTATTGCAATACAACCAGGAAGATGTTGAGAAACCATAcgagtttttgtttgtttgaccaAAATCCCACTTCCATACTTCAATGAAGGTATGCATCAAAGCCTGCTAAGTATAATAAAGAGTAAATCGTCACACACTGTAATCCCAGTAATGGTCTAAACAGGGATTGTGTGTAACAGGATGATACCATCTGATGGAATTGGAATtgggtttgctttttttgttttttaaatctgtgataGATGGTAGTCCAGATGGGAGGCTCAGAACAACGCTTTCATGCTATTGAGATGAAGGACAGACGTTGCAGCTTTAGTACCTTGCAATTATGACTTCATggatgcaaaaaatatatattaaaaataaacgtGTCAAAGATTGTAATGAGTAATATGAGAGTCGTGTATGTATATTATCGATCTACCTAATACAATTCCTAGTCTTTTTTTGCCTTAAACAGAAGGATTATATTTACTACAAGCTGCTAGAACTTGATATACCTAGGTCTcagtgtttcaaataaataattgaaatgcattacaagaa

Function

symbol description
polr3k Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Acts upstream of or within hematopoietic stem cell homeostasis. Predicted to be located in nucleolus. Predicted to be part of RNA polymerase III complex. Is expressed in hematopoietic system. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy. Orthologous to human POLR3K (RNA polymerase III subunit K).
rpc11 Contributes to RNA polymerase III activity. Involved in tRNA transcription by RNA polymerase III and termination of RNA polymerase III transcription. Part of RNA polymerase III complex. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy. Orthologous to human POLR3K (RNA polymerase III subunit K).

NR:

description
DNA-directed RNA polymerase III subunit RPC10

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03019 RPC11, POLR3K; DNA-directed RNA polymerase III subunit RPC11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018358 True 6292 mRNA 0.39 3 9199712 9206776
TU145182 False 1157 TUCP 0.41 3 9199657 9201586

Neighbor

gene id symbol gene type direction distance location
AMCG00018355 NA coding upstream 11898 9162486 ~ 9187759 (+)
AMCG00018357 NA coding upstream 43204 9156181 ~ 9156453 (+)
AMCG00018356 NA coding upstream 69537 9124313 ~ 9130120 (+)
AMCG00018354 NA coding upstream 177759 9020003 ~ 9021898 (+)
AMCG00018351 NA coding upstream 258021 8937615 ~ 8941636 (+)
AMCG00018359 mgrn1 coding downstream 52678 9259454 ~ 9285418 (+)
AMCG00018366 NA coding downstream 84556 9291332 ~ 9295905 (+)
AMCG00018365 aanat2,LOC107672440,LOC107670449,LOC107596820,LOC106934031 coding downstream 147927 9354703 ~ 9359686 (+)
AMCG00018373 NA coding downstream 312891 9519667 ~ 9520987 (+)
AMCG00018371 NA coding downstream 338765 9545541 ~ 9561135 (+)
G115931 NA non-coding upstream 217 9198877 ~ 9199440 (+)
G115896 NA non-coding upstream 163074 9036330 ~ 9036583 (+)
G115875 NA non-coding upstream 329315 8868542 ~ 8870342 (+)
G115873 NA non-coding upstream 337146 8862081 ~ 8862511 (+)
G115796 NA non-coding upstream 494754 8703157 ~ 8704903 (+)
G115939 NA non-coding downstream 21234 9228010 ~ 9230141 (+)
G115990 NA non-coding downstream 230256 9437032 ~ 9437303 (+)
G116002 NA non-coding downstream 265721 9472497 ~ 9477108 (+)
G116011 NA non-coding downstream 320706 9527482 ~ 9527757 (+)
G116019 NA non-coding downstream 357950 9564726 ~ 9566691 (+)
G115789 NA other upstream 504938 8693364 ~ 8694719 (+)
G115648 NA other upstream 1077486 8119778 ~ 8122171 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other upstream 1305208 7893627 ~ 7894449 (+)
AMCG00018280 NA other upstream 2452219 6710482 ~ 6747438 (+)
AMCG00018272 NA other upstream 3039041 6155488 ~ 6160616 (+)
AMCG00018360 f100a other downstream 33035 9239811 ~ 9245234 (+)
AMCG00018368 NA other downstream 232881 9439657 ~ 9447144 (+)
AMCG00018369 NA other downstream 274176 9480952 ~ 9486146 (+)
AMCG00018374 NA other downstream 305538 9512314 ~ 9513236 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other downstream 355285 9562061 ~ 9564564 (+)

Expression


Co-expression Network