AMCG00018372 (LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555)


Basic Information

Item Value
gene id AMCG00018372
gene name LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9562061 ~ 9564564 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018372
CTGACACATCACCCTCGGCACCACGACTAGGCTGACCCAGTCCTATAAAGAGTGAATAAAGGGAAAATGTGTCAATGTGACCTCGGTCCGCCATGCAGCAGCGCCGGCCCCGCACGCCTGCAGTCTCTACACCACATGCGTGGGGGGGCACCAGAGCTGCGCTGGATCGCAAACCGGAGTCATTCAACACTCATTGCTTTGGAGAAGTCACTTTGACCAGCACACCTTCCAGCTCCAGAGGCTACAGATGCCACTTTAATTCCGTGTGCGGGGTCACCCAGCCCGGCCTGCCTTGTGCGCACAGCGGCTCCCCTGGGTGTCCTAACGCACCGTGCTTTGCTTTGCCACAGGAGAAGATGGCAGAGGACATCAAGGAGAAGTTGAAAAATTACCGCACGGCCCCCTTTGACGCCCGATTCCCGAACCAAAACCAGACCAAGAACTGCTGGCAGAATTACCTCGATTACCACCGCTGCCAGAAGGCACTGACAGCCAAAGGAGCCGACATCACCCCGTGTGACTGGTACAAAAGGGTGTACAAATCAATATGCCCGCTGTCTTGGGTCAACAAGTGGGATGAACAGCGGGATGATGGAACCTTCCCTGGAAAAATCTGAATCGACGTTCCTGTGGAGTGGCTTCTGAAACAGAGCTGAAACGTGACCATGGAGGGGGCTGGGTTCGGCCTTCCCATACCTGCGTGCCCTGCTCGTCTTCGAAACCATGAATGTTAAAAGAAGATTCCTTAAAAACTGCCAATATCAGATTGTAAgcggttgtttttttttgtctcaggCAATAAATCCTAAGTGAATTAAGCTGCTGTGTATCATGGGTAATGCTATTTGCTGTTGGAATTTTAAAgcttgcaaaatacaaaaaagaaataaagagaagcagaataatacatattgcaAAAGAACAACGAAAATTGAAGTATTTACAGAGAGGAATCCAAACAAAGCAGTGCAAACAAAACCTGCAGAAGC
>TU145295
GCGCCGGCCCCGCACGCCTGCAGTCTCTACACCACATGCGTGGGGGGGCACCAGAGCTGCGCTGGATCGCAAACCGGAGTCATTCAACACTCATTGCTTTGGAGAAGTCACTTTGACCAGCACACCTTCCAGCTCCAGAGGAGAAGATGGCAGAGGACATCAAGGAGAAGTTGAAAAATTACCGCACGGCCCCCTTTGACGCCCGATTCCCGAACCAAAACCAGACCAAGAACTGCTGGCAGAATTACCTCGATTACCACCGCTGCCAGAAGGCACTGACAGCCAAAGGAGCCGACATCACCCCGTGTGACTGGTACAAAAGGGTGTACAAATCAATATGCCCGCTGTCTTGGGTCAACAAGTGGGATGAACAGCGGGATGATGGAACCTTCCCTGGAAAAATCTGAATCGACGTTCCTGTGGAGTGGCTTCTGAAACAGAGCTGAAACGTGACCATGGAGGGGGCTGGGTTCGGCCTTCCCATACCTGCGTGCCCTGCTCGTCTTCGAAACCATGAATGTTAAAAGAAGATTCCTTAAAAACTGCCAATATCAGATTGTAAgcggttgtttttttttgtctcaggCAATAAATCCTAAGTGAATTAAGCTGCTGTGTA

Function

NR:

description
PREDICTED: cytochrome c oxidase subunit 6B1-like

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005739 mitochondrion cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG:

id description
K02267 COX6B; cytochrome c oxidase subunit 6b

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018372 True 989 mRNA 0.50 5 9562061 9564564
TU145295 False 619 TUCP 0.52 4 9562161 9564404

Neighbor

gene id symbol gene type direction distance location
AMCG00018371 NA coding upstream 926 9545541 ~ 9561135 (+)
AMCG00018373 NA coding upstream 41074 9519667 ~ 9520987 (+)
AMCG00018365 aanat2,LOC107672440,LOC107670449,LOC107596820,LOC106934031 coding upstream 202375 9354703 ~ 9359686 (+)
AMCG00018366 NA coding upstream 266156 9291332 ~ 9295905 (+)
AMCG00018359 mgrn1 coding upstream 276643 9259454 ~ 9285418 (+)
AMCG00018383 NA coding downstream 111124 9675688 ~ 9685520 (+)
AMCG00018395 NA coding downstream 126262 9690826 ~ 9691578 (+)
AMCG00018385 NA coding downstream 144415 9708979 ~ 9711300 (+)
AMCG00018384 NA coding downstream 161218 9725782 ~ 9729487 (+)
AMCG00018388 NA coding downstream 169647 9734211 ~ 9740498 (+)
G116011 NA non-coding upstream 34304 9527482 ~ 9527757 (+)
G116002 NA non-coding upstream 84953 9472497 ~ 9477108 (+)
G115990 NA non-coding upstream 124758 9437032 ~ 9437303 (+)
G115939 NA non-coding upstream 331920 9228010 ~ 9230141 (+)
G115931 NA non-coding upstream 362621 9198877 ~ 9199440 (+)
G116019 NA non-coding downstream 162 9564726 ~ 9566691 (+)
G116020 NA non-coding downstream 3900 9568464 ~ 9569497 (+)
G116021 NA non-coding downstream 5663 9570227 ~ 9570461 (+)
G116022 NA non-coding downstream 6686 9571250 ~ 9571501 (+)
G116024 NA non-coding downstream 9418 9573982 ~ 9575102 (+)
AMCG00018374 NA other upstream 48825 9512314 ~ 9513236 (+)
AMCG00018369 NA other upstream 75915 9480952 ~ 9486146 (+)
AMCG00018368 NA other upstream 114917 9439657 ~ 9447144 (+)
AMCG00018360 f100a other upstream 316827 9239811 ~ 9245234 (+)
AMCG00018358 polr3k,rpc11 other upstream 355285 9199657 ~ 9206776 (+)
AMCG00018380 NA other downstream 42097 9606661 ~ 9612918 (+)
AMCG00018405 NA other downstream 439709 10004273 ~ 10012673 (+)
AMCG00018406 NA other downstream 479888 10044452 ~ 10046523 (+)
AMCG00018422 NA other downstream 693241 10257805 ~ 10292261 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 1687795 11252359 ~ 11256165 (+)

Expression


Co-expression Network