AMCG00018380


Basic Information

Item Value
gene id AMCG00018380
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9606661 ~ 9612918 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018380
GCCAACACCTCTGACTGCAGCTCCAGTGCGGGAGCCTGCCAACAGGAGCTGAAGTCATTCCCCCATCGGAGAGCGATTCTGCAATTAAAGCAGACCCTTTGCCAACGCTCAATCATACAGCACGATGGCCAGGAAAAGTGAGCTCGGCTACGTTTAATTGCGGaggaatttaattaataacCGGGGCTGCAGAGACTTCACCATTCGAGACTGCAGAAGCACAGCCAAGTGGACACTCCTGTCTACAGGCCGGATGACAGCAGCAACAAGGCAGGAGGTGCTGTCCCTGTACCGCCGTGTGCTGCGGATTGCACGCGGGTGGCAGGCGCAGTCCGGTGTGCCTCAGGACACGTACAGCGAGAGGAACTATATATCCCAGGAGGCCAGGACTCTATTCAGGCAAAACAAACAGATCGGTGAAAGTGAGTCAATCAGGAAATGCATACAAGAATGCCAAGCACGAATAGAGATTGGACTTCATTACAGGATTCCTTATCCCAGGCCGACCCACCTGCCTCCACTAGGCCTGGCCACGCAGAAAGCACGCAAGCTCCGCTCCCAGGAAAAACGGAGGAAACAAGCTCAACCGATTTACCTACAGTCACATGACGAGACGTCTTGAGCTCCTCCTGCAGAGTCAGCCGTGGATGTATGGACTCCAGGGAGCTTCTGTGAGGGCAGCTTTGAAGAGGCTGGAGGTGCCGGTGCAGAGAAGTGCAGGCTGTCAGCAGTGCTGCTCTTCCACCACCCAGCTGATCGGGAGAGAGATGTGACCCCCGTCCCACTACTGCGTTCCTCAGCAGCACGTTTGAAGTGAGAACGTGGGGAAGTGCGCAAACATGAAACTTGGGAAGCtacattttccactttttttccccatgagGCAGTaacaaagtttttgttttgtttttatttcattgctggttcaatttatatatatatatatatatatatttaaatccagGAAATCCTGTGAGTGCTGTGGAATACCATCCTATATGacacattaaatacatctgttagAAATACTGggatatgtatgtaatataggGAGTTACAATTCTGTATTAGAAACTATCTGTGCTGCACCTTCCTTTTTAGACTTGTAACTATGAAGCCACTGGGCAGTATGCAATGAGATACAACTACAAATGTCTCGAATAGTCCTGACATCTTCTCACTGTAATGTAAAACTCCCTTTGACTTACATTTTAGCAGTcattgaaaatatgaatgaaaaataaattgatatgcTTTTTGTAACTGTTGTACCAtaccaataataaaatacattgatgtGA
>TU145312
GGTTTGACATTTCAGAAGTGGTAGAATCATAAGAGGCCGGATGACAGCAGCAACAAGGCAGGAGGTGCTGTCCCTGTACCGCCGTGTGCTGCGGATTGCACGCGGGTGGCAGGCGCAGTCCGGTGTGCCTCAGGACACGTACAGCGAGAGGAACTATATATCCCAGGAGGCCAGGACTCTATTCAGGCAAAACAAACAGATCGGTGAAAGTGAGTCAATCAGGAAATGCATACAAGAATGCCAAGCACGAATAGAGATTGGACTTCATTACAGGATTCCTTATCCCAGGCCGACCCACCTGCCTCCACTAGGCCTGGCCACGCAGAAAGCACGCAAGCTCCGCTCCCAGGAAAAACGGAGGAAACAAGCTCAACCGATTTACCTACAGTCACATGACGAGACGTCTTGAGCTCCTCCTGCAGAGTCAGCCGTGGATGTATGGACTCCAGGGAGCTTCTGTGAGGGCAGCTTTGAAGAGGCTGGAGGTGCCGGTGCAGAGAAGTGCAGGCTGTCAGCAGTGCTGCTCTTCCACCACCCAGCTGATCGGGAGAGAGATGTGACCCCCGTCCCACTACTGCGTTCCTCAGCAGCACGTTTGAAGTGAGAACGTGGGGAAGTGCGCAAACATGAAACTTGGGAAGCtacattttccactttttttccccatgagGCAGTaacaaagtttttgttttgtttttatttcattgctggttcaatttatatatatatatatatatatatttaaatccagGAAATCCTGTGAGTGCTGTGGAATACCATCCTATATGacacattaaatacatctgttagAAATACTGggatatgtatgtaatataggGAGTTACAATTCTGTATTAGAAACTATCTGTGCTGCACCTTCCTTTTTAGACTTGTAACTATGAAGCCACTGGGCAGTATGCAATGAGATACAACTACAAATGTCTCGAATAGTCCTGACATCTTCTCACTGTAATGTAAAACTCCCTTTGACTTACATTTTAGCAGTcattgaaaatatgaatgaaaaataaattgatatgcTTTTTGTAACTGTTGTACCAtaccaataataaaatacattgatgtGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018380 True 1301 mRNA 0.47 5 9606661 9612918
TU145312 False 1088 TUCP 0.45 5 9609077 9612918

Neighbor

gene id symbol gene type direction distance location
AMCG00018371 NA coding upstream 45526 9545541 ~ 9561135 (+)
AMCG00018373 NA coding upstream 85674 9519667 ~ 9520987 (+)
AMCG00018365 aanat2,LOC107672440,LOC107670449,LOC107596820,LOC106934031 coding upstream 246975 9354703 ~ 9359686 (+)
AMCG00018366 NA coding upstream 310756 9291332 ~ 9295905 (+)
AMCG00018359 mgrn1 coding upstream 321243 9259454 ~ 9285418 (+)
AMCG00018383 NA coding downstream 62770 9675688 ~ 9685520 (+)
AMCG00018395 NA coding downstream 77908 9690826 ~ 9691578 (+)
AMCG00018385 NA coding downstream 96061 9708979 ~ 9711300 (+)
AMCG00018384 NA coding downstream 112864 9725782 ~ 9729487 (+)
AMCG00018388 NA coding downstream 121293 9734211 ~ 9740498 (+)
G116028 NA non-coding upstream 27564 9578837 ~ 9579097 (+)
G116027 NA non-coding upstream 29061 9577396 ~ 9577600 (+)
G116026 NA non-coding upstream 29470 9576990 ~ 9577191 (+)
G116024 NA non-coding upstream 31559 9573982 ~ 9575102 (+)
G116022 NA non-coding upstream 35160 9571250 ~ 9571501 (+)
G116034 dnah3,LOC108263105 non-coding downstream 64 9612982 ~ 9613781 (+)
G116035 dnah3,LOC107561106 non-coding downstream 5752 9618670 ~ 9618905 (+)
G116088 NA non-coding downstream 76847 9689765 ~ 9747387 (+)
G116199 NA non-coding downstream 419635 10032553 ~ 10041833 (+)
G116214 NA non-coding downstream 507259 10120177 ~ 10121558 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 42097 9562061 ~ 9564564 (+)
AMCG00018374 NA other upstream 93425 9512314 ~ 9513236 (+)
AMCG00018369 NA other upstream 120515 9480952 ~ 9486146 (+)
AMCG00018368 NA other upstream 159517 9439657 ~ 9447144 (+)
AMCG00018360 f100a other upstream 361427 9239811 ~ 9245234 (+)
AMCG00018405 NA other downstream 391355 10004273 ~ 10012673 (+)
AMCG00018406 NA other downstream 431534 10044452 ~ 10046523 (+)
AMCG00018422 NA other downstream 644887 10257805 ~ 10292261 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 1639441 11252359 ~ 11256165 (+)
G116585 rbbp6,LOC107689611 other downstream 2353329 11966247 ~ 11970778 (+)

Expression


Co-expression Network