AMCG00018387


Basic Information

Item Value
gene id AMCG00018387
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9741599 ~ 9744668 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018387
ttacaatttaggagaatattttgcacatttatgtataaatagctatatgtatttagtttatgatctctaaattaatattgtcaTTAATTTGTCTTATATTCATCTCTAGATTTTTCTGCACATTGTCAATTGTAAAATTACTAGAAGTACTTTAGACTGGTAAAGTAACTGGTATTATATGTTGGTCATTTTGGACAAAGCTATTggacacacaaatgtataaaagtgCAATAGAGCGATAGGacaacattgctttaaaattgtAGACAAACATTGTGTAAAACCCAGAAACAACAGAACATATGGAAATCTCAACAatagtcttagagaagttacaaagtaCAGGCACATTTATACAGAccaaacaggagagagagataataggatccacatgtctgtcccgtgatcaGTGGAAactcggtttctgcctgacagttagttaggaaaacccatatatggctGAACCGGGGAAAATTAAGGCTTaagtaatatttaatgtaaggGGGGCTTGTTGAAAGTATCAAGCCCACATTGTTGGATAAAACTGGTTCTTACCAGACTGTGTTCCCCTGcgcagggttgaactatagcacattACCATAACACAGTAAGACCATGAGACAGTGACTTTATTTACACAGActcacagggaaagaaatgcgcTTCTTCACCCACCATTTCCACTAAATAACTCAATCCAGGACATGCTTTCTTTATATCTTTATTGTGGGGTTATCCTCATACAAAATTGCTTAAAACCATCATTACTGATGATCCATCTAGAATCACTAATCCGGTTTCTCTTCCCACATCTGTAAACTCTTACAGGTATCTGAGtgtgagacaggagagaggaATTAAAGCCTTTGACGTGCAAAACTATAAAACTATTGAAAAGGGCAGTTTTTCTTTAGAGCTTAATAAAGACAAATCAAATGAACGCACGTTTTGCCCTCATAGCAAGCTGAGGTACTTCAGTCCACAGCCAGAGTCTATGCCTTTCGACCTCAATCATGGTTACCCTCACAAATACCTTCCCATGGGCAGCAATGTGAAAGATGGCGTGGATCACGTGCTGAGGTGGAtgttaaaggaaaaatacacCCTTGATCAGGGGTAAGGTTTTCTATTTATCAAGCACAGTATCACCCCAGCTAACCGTTCGTCCCAGCAACGTCGTGTAAGGCTGTAGTTTGTCGTGTGGGTGCATTTAGCTTAAATATGACCCCCAAAACAATGTTCTTGACCACACAAATGACGTTAATGTgttagtgatttaaaaaaacctgtaacatttctgattagaaacAGTAACCAAATGTCTTGCATGGTTAATAATAACTGAGAAACTGATAGTTTGAATAGATAGCTTGAAGCCTTTTTGTTGTATGACTATTGGAAGCATTAACATACTTCATTTACAAACTTAATTTGTATCAAACTTGGGCACACAAACTTGGACAGTGACTCTCCCAGTAACTTTCAGTCAGTAAAATTGTCATTCCTCGGTATCTTAGATGGCTTTGACATATAGAGTTGATGCACTAATGAAACCTGACGATTTCTCTGTTATCTTTGTGGCTGTCGGGTACCCATCTGAAAATGCTGGCAGGGATGCGAGCACTGTCTTCCTCACCTCTCGCGGACGGCTGACAAAGATATTCACTTCCCCTTACCAGATGAGGGGTGAAGGGTGGAAGATGGCAGTGACTCTGTACAGAAAGACCTTTTACATTGACGAGGTCAGGGACAGTGAGGATTCTAATTCATGGATGGTTTACTGGGGCTATAAGTTTGAGCAGTATGTGTGTGCAGACCAGCCTAATGGCAAACCCAACATCGAAGGTCATATTAACACAAGTGAAGCGTTCTACACTGTGGTGGAATCCAACATCAATAGCTTCAAGCTGCTCTTCTCTGGAGAGGTGGACTGTATGGAGGAGTGCCCCAAGTACCCCACAGCTCCCGGCTATTATGTGGAGatgaaaacatctttaaaaccAAACGGAGAGGACTTTTTTTACAGACACAAGATGCTTAAATGGTGGGCCCAGTCCTTTTTGGTTGGTCTCTCACGTATCTTTGCAGGCTACAGGAATACATCGGGGATTGTTCACAAAACGGAAATGTTTGAGGTTCAGAGCATTCCTGAGCTGTGCCAGaaaaacatacaaaactcTTGGGAACCTCAAGTGTGCATGAATTTCCTCTGTGAATTTTTGTCCTTTGTGCAGAAGGTTGTCACACAGGATAATCCCAGGTGA

Function

GO: NA

KEGG:

id description
K14845 RAI1, DOM3Z; RAT1-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018387 True 2264 mRNA 0.40 4 9741599 9744668

Neighbor

gene id symbol gene type direction distance location
AMCG00018388 NA coding upstream 1101 9734211 ~ 9740498 (+)
AMCG00018384 NA coding upstream 12112 9725782 ~ 9729487 (+)
AMCG00018385 NA coding upstream 30299 9708979 ~ 9711300 (+)
AMCG00018395 NA coding upstream 50021 9690826 ~ 9691578 (+)
AMCG00018383 NA coding upstream 56079 9675688 ~ 9685520 (+)
AMCG00018389 NA coding downstream 11078 9755746 ~ 9760627 (+)
AMCG00018386 si:ch211-256e16.3,LOC106601741,LOC105026145,LOC107674048,LOC107552129,LOC108412900,LOC107717492 coding downstream 24100 9768768 ~ 9774480 (+)
AMCG00018402 NA coding downstream 36932 9781600 ~ 9788774 (+)
AMCG00018399 c16orf52.L,c17h16orf52,C20H16orf52,LOC108258941,LOC106518731,LOC107675623 coding downstream 80818 9825486 ~ 9833544 (+)
AMCG00018398 NA coding downstream 102233 9846901 ~ 9880691 (+)
G116035 dnah3,LOC107561106 non-coding upstream 122694 9618670 ~ 9618905 (+)
G116034 dnah3,LOC108263105 non-coding upstream 127818 9612982 ~ 9613781 (+)
G116028 NA non-coding upstream 162502 9578837 ~ 9579097 (+)
G116027 NA non-coding upstream 163999 9577396 ~ 9577600 (+)
G116026 NA non-coding upstream 164408 9576990 ~ 9577191 (+)
G116199 NA non-coding downstream 287885 10032553 ~ 10041833 (+)
G116214 NA non-coding downstream 375509 10120177 ~ 10121558 (+)
G116264 NA non-coding downstream 470719 10215387 ~ 10216789 (+)
G116300 NA non-coding downstream 600067 10344735 ~ 10345082 (+)
G116301 NA non-coding downstream 606296 10350964 ~ 10351562 (+)
AMCG00018380 NA other upstream 128681 9606661 ~ 9612918 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 177035 9562061 ~ 9564564 (+)
AMCG00018374 NA other upstream 228363 9512314 ~ 9513236 (+)
AMCG00018369 NA other upstream 255453 9480952 ~ 9486146 (+)
AMCG00018368 NA other upstream 294455 9439657 ~ 9447144 (+)
AMCG00018405 NA other downstream 259605 10004273 ~ 10012673 (+)
AMCG00018406 NA other downstream 299784 10044452 ~ 10046523 (+)
AMCG00018422 NA other downstream 513137 10257805 ~ 10292261 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 1507691 11252359 ~ 11256165 (+)
G116585 rbbp6,LOC107689611 other downstream 2221579 11966247 ~ 11970778 (+)

Expression


Co-expression Network