AMCG00018390 (snu13,LOC101154660,LOC105910236)


Basic Information

Item Value
gene id AMCG00018390
gene name snu13,LOC101154660,LOC105910236
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9774306 ~ 9779545 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018390
CTGCAGACGGTCATTGAGTCCTGAGCAGGCGCGGCAGTGGAGTAGCAGTTTCAGAGACTACCCGTGTAAATCCTCCGTGAAGCACACGCCGAGAGGACACACAGATCCACCGTTCTTGTGATTATCTGACAACCAGACGCAACTATGACTGACCCTGAAGTGAACCCCAAGGCCTACCCCCTGGCCGACGCCACGCTGACCAAAACCATCCTGGATCTGGTCCAGCAGGCGTCCAACTACAAACAACTCCGAAAGGGAGCTAATGAAGCCACTAAAACCCTGAACCGTGGGATCGCCGAGTTCATTGTGATGGCTGCAGACGCTGAGCCCCTGGAGATCATCCTCCACCTGCCGCTGCTGTGTGAGGACAAGAATGTGCCCTATGTGTTTGTGCGCTCCAAGCAAGCACTGGGCAGGGCCTGTGGGGTCTCCCGGCCCGTCATCGCCACCTCTGTCACCATCAAGGAGGGCTCCCAGCTCAAGCCGCAGATCCAGTCTGTGCAGATGGCTATTGAGAGGCTGCTAGTCTGAGGAAACCACAGGAGGGAGATCTGAGagaatttgttatatttttttaatggggaGAAAAAGACTTTGTTcttaaatgaaaatgagaatTCTCGCTTGCTGATCCTCCTAAATCATAGACGCACGTGTATCTATTCCAGTGTGTTTATATGAATttaatttttgattttgttttaatattaaaaccCCCAAAAAGAATTGTTCTTTGCCATTAATGCCAGACAAAGCTTTAACGTATGCTTAGTAGTCGTATTGGTTTGTAAGAGTTGTGATTAGTAGTAAAAGTGGAATTGCCACATTGCTCTGCTTTGAAACATGCATTCATGCCTAGCTATGAAAAAGCTGCATGGTCCCTgttctattttattataaatacaggTCAGTGGTCAGAAATGGCTTCTCCTTTACTAAACAAGCCTGTTCTTTGTGTGAGGGACGGAAGCAATCCTTAGTGTTCCGTCTCTGTGTGCTGAAGGAAGCAATTTCGAACAAACCATTGtagtgcaatttgtttttattgtggttAGGGTTGTACAATATTAAATTTGAACACCACATCATACACAGTGAGAACTCTCCACATACACCACTGGTTCTACAATACAATGTCTCCGTACAAGAGGGCTCCACTACCATAATGTAGTCACCCCCCAGACCCACTCAACGCACAGCAGAAAGATCAGTAAGTCAACAAATACTTCACAGAACACATAAGCAGGGGGAGTCTTTAAATGATGCAACACAACGCACTGAGGGGAAATGGACCGTGTCTTCTCTAGATTGTGGAAATTAAGACTTAGTTGAGAAGAAGTATAGCATTTGGCCCAAATTCGTAGTTGTAATGTTATTGATAAAGGGAGATtctagatttttgtattttaaagatacagCTGATACTTCAAACAAGTATGACTCCCCTTTTACCATTGAAGCAGTCTGTTCTAGTTACTTTACAAATATGGCACAATGCAACTGCTACTGAACATAATTGATGACGATAATAACCCTCCTGAGTTCCACAGGGCTGTCACTTCAACATTGTTGAGAAGAGGGTCATCCTGCCATTTCTGTAAGTATCAGAGAGCACACAGCCGAATATTAGAAGCAAACTTTTGGCTGAAGTTGCTGTGAAAAGCAAATTAGCTATTTTTGCTTTCACAAGCATCAAATGGCCATGTAATATTCTGTACAGGTTGTTTAGCATATGTTCccaaaagcttttatttttgtatgcaccAGCTAACCTCAAtttcaccaaaaataaatataaacaccaaaacaataaaagcattcTGCCAAGCTagaagagaaaataacattGTCCACATTGCATAACACTGCATTCTGGCAGCATTCATGACTCTATAAGTATACTAAGTATACTTCATGCATGACATTCTTGCAGAAAAAAGCTCTTCCTTTACTGTCCCTTCAGCCATTGACAGACAATGAGGCGGTGTTGCACAATATACCTGGCTCAGGATAGGTCAGTAACCAAACATGATGCAGTgattagtgtttgttttcatgtttcacAGTGACTTGTGCTTGGCAGGAATATAAATGTGACCATTGCTGCTTTACTATGGTGTAATGAGCATTGAGGTATGTTTCTGGAAATTAGTGAGGCTCAAAAAACATCTGGGGAACAGTTTCTGTGCTGTTCTGGATTCAG
>TU145440
caatttgtttttattgtggttAGGGTTGTACAATATTAAATTTGAACACCACATCATACACAGTGAGAACTCTCCACATACACCACTGGTTCTACAATACAATGTCTCCGTACAAGAGGGCTCCACTACCATAATGTAGTCACCCCCCAGACCCACTCAACGCACAGCAGAAAGATCAGTAAGTCAACAAATACTTCACAGAACACATAAGCAGGGGGAGTCTTTAAATGATGCAACACAACGCACTGAGGGGAAATGGACCGTGTCTTCTCTAGATTGTGGAAATTAAGACTTAGTTGAGAAGAAGTATAGCATTTGGCCCAAATTCGTAGTTGTAATGTTATTGATAAAGGGAGATtctagatttttgtattttaaagatacagCTGATACTTCAAACAAGTATGACTCCCCTTTTACCATTGAAGCAGTCTGTTCTAGTTACTTTACAAATATGGCACAATGCAACTGCTACTGAACATAATTGATGACGATAATAACCCTCCTGAGTTCCACAGGGCTGTCACTTCAACATTGTTGAGAAGAGGGTCATCCTGCCATTTCTGTAAGTATCAGAGAGCACACAGCCGAATATTAGAAGCAAACTTTTGGCTGAAGTTGCTGTGAAAAGCAAATTAGCTATTTTTGCTTTCACAAGCATCAAATGGCCATGTAATATTCTGTACAGGTTGTTTAGCATATGTTCccaaaagcttttatttttgtatgcaccAGCTAACCTCAAtttcaccaaaaataaatataaacaccaaaacaataaaagcattcTGCCAAGCTagaagagaaaataacattGTCCACATTGCATAACACTGCATTCTGGCAGCATTCATGACTCTATAAGTATACTAAGTATACTTCATGCATGACATTCTTGCAGAAAAAAGCTCTTCCTTTACTGTCCCTTCAGCCATTGACAGACAATGAGGCGGTGTTGCACAATATACCTGGCTCAGGATAGGTCAGTAACCAAACATGATGCAGTgattagtgtttgttttcatgtttcacAGTGACTTGTGCTTGGCAGGAATATAAATGTGACCATTGCTGCTTTACTATGGTGTAATGAGCATTGAGGTATGTTTCTGGAAATTAGTGAGGCTCAAAAAACATCTGGGGAACAGTTTCTGTGCTGTTCTGGATTCAGAGGGATAATTAAAAACGGAACATCCAAGAATCCTACCTCGAAATCAATTGTTGAAATAATCATCTATCAGAACCACTGAATTCCACTCCCAGATATCAAATCCAGACCAACTAATTCCTGGCGCTCCATAAATCACAAACACCTTTGCTACTAAAACAGCAGAACCAATTAACACACAATCTCGGATGTTACAAATCTACTTCCTCTTCTTCAAAAGTGTACAAAGCACTCAAAAATCAACACAGGAGAGACAAAAAGGTGTCCGGGTCAGATGAAGCATGCCTGGAAATCTGAAGCTGCTTGTAATTCTGGTAgcttcaaataaacatttaagcCTGCCCTGAACCCAAGTCTCACAGCTATGACTTTCTAAGCACAAGCTAATTTAGTATGTAAACTTGCAggctttatttaacaaagtcCATTCTCACAAGATGCTTAAAGTGGTCTGGGATGGTCGTTGCGATCGAAAAACatcatgtactgtatatacaagACTTACAGAAACGTGAAGATGAGGTAACCGTAAAAGTCTGAAGTGGACGGTCCTGTTCAGGGTTTTGAGATATGAAATAGAGAAGGTGTTGGTGTGGGACAGTCCTGAATTAACCTGCTCAACGTGTTTATATTGTGACCAGGATGGAATCCATGTCATGGTGGCAGACAGACTATAATGGAAATCATGCCTCCTGAACCAAGGACAGGACTAAAGCAATGACCAGGGAGCTTCTCCTAGTAAATTGTGGTgggcattatttttaaaattgtgttctACACATAAAATGGCACATTCACATAAGGAGGATTTCAAAAGTAAGTTACAATAATGAAAGCATCTCAGTAACGTTTACACTTGAGGCGATGGAACCTACCAGGCTTGTCCATTTGCTCCTTAACTTAATTAAAGGGTCATGAGGGCTAATTAATCTCTTAACATGAATGTAAGAAAGaatgaaacaagcaaacaaacaatcaaaaggAAAATTTGCCAGTTTGGTTTAGTGTTCACACATTTGAAGTTttccacacaaaataaatatgaaatggatCAATAAAACTTCAGATAGCCACAGCTAAGATACTGAGATTGGACatccataattaaaaacagaaaacatgttctTAGTGGCTCGAAACCTACTGGTGGCACATGAATCTGGCGATCTTGTCTCTGCTTCCTGTCATTGCAGTCTGCTTTGAAGCCCAGATATTTCGGAACAGGGCAGGGCACAAGCAGCCATGCTGGAGCCCCGTAGGAAATGGCATCCCAGTGCAGTTCTGTGGTGTCCACTCAGCACTTAACCTACACTGGCAGTTTTCCTTTTACCTTTATCGGCACAGAGCATCAGCACCATTTTCTTAGGCCTTATTTGGCAGTGCCTGTGGCTATTTCGGAATTCCAGAAGGGGTTGGGTGAGGTGGAAatcgaaaacaaacaaaatgccagAACTGACTTCTTCCAAACTACAAACATGAGTTTCTCATTGTGAGCTGCCTGGGTTACTGGGGTCCGCAGATAAACCAGGTCTGCAGTGAGAGCAGATCTGCCGTCAGGTATAGAAGCAGCAGCAGGGCATTCTGTCTCACTGGGACGCCCTGTCCGGTGGGTGCTGGGACACAGGCTGGCTTGGGGCTTCCCAGACGCCCCAATCTGAATGGCACTGCTCTCAGTCCACGGGAAACTCCCTTTCGGAGGCGGTTTCTGGGCGGCTGGCGCTGCGGGCATCTTTCCTCACCTGCAGAGACACGCAGCTCAGCCAGCTACGACTAGTTGGCATCTCACCCACGATCTCCCAGCTGTCCGTCTCCTCGCAGTACCGCTCGATGGTGTCGTGGTACCTG

Function

symbol description
snu13 Enables ATPase binding activity and RNA binding activity. Contributes to snoRNA binding activity. Involved in mRNA splicing, via spliceosome. Located in dense fibrillar component. Part of U2-type precatalytic spliceosome; box C/D RNP complex; and spliceosomal snRNP complex.

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0061053 somite development biological_process
GO:0005730 nucleolus cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018390 False 2203 mRNA 0.43 4 9776179 9779545
TU145440 True 3013 lncRNA 0.42 2 9774306 9777349

Neighbor

gene id symbol gene type direction distance location
AMCG00018394 NA coding downstream 7458 9761500 ~ 9766848 (-)
AMCG00018392 NA coding downstream 20154 9744999 ~ 9754152 (-)
AMCG00018391 NA coding downstream 40143 9731700 ~ 9734163 (-)
AMCG00018393 NA coding downstream 51405 9713318 ~ 9722901 (-)
AMCG00018381 dnah3 coding downstream 98626 9612982 ~ 9675680 (-)
AMCG00018403 NA coding upstream 165143 9944688 ~ 9960060 (-)
AMCG00018404 kdelr2,LOC103354828,LOC102232388,LOC100710456,LOC107091462,LOC104935524 coding upstream 193740 9973285 ~ 9980996 (-)
AMCG00018409 NA coding upstream 206629 9986174 ~ 10002150 (-)
AMCG00018408 NA coding upstream 224688 10004233 ~ 10014893 (-)
AMCG00018410 rac1a,rac1,LOC105026138,LOC107569188,LOC107596579,LOC106601744,LOC108437155 coding upstream 249957 10029502 ~ 10041516 (-)
G116065 NA non-coding downstream 246570 9527492 ~ 9527736 (-)
G116058 NA non-coding downstream 292154 9480910 ~ 9482152 (-)
G115949 NA non-coding downstream 558489 9200800 ~ 9215817 (-)
G115874 NA non-coding downstream 911929 8861873 ~ 8862377 (-)
G115807 NA non-coding downstream 1255103 8517334 ~ 8519203 (-)
G116136 NA non-coding upstream 4885 9784430 ~ 9788579 (-)
G116236 NA non-coding upstream 363880 10143425 ~ 10144599 (-)
G116255 NA non-coding upstream 383733 10163278 ~ 10163522 (-)
G116256 NA non-coding upstream 389703 10169248 ~ 10169622 (-)
G116352 NA non-coding upstream 829473 10609018 ~ 10671019 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other downstream 516104 9239812 ~ 9258202 (-)
AMCG00018339 NA other downstream 1097498 8666737 ~ 8676808 (-)
AMCG00018344 NA other downstream 1125499 8641896 ~ 8648807 (-)
G115581 NA other downstream 2000414 7743218 ~ 7773892 (-)
AMCG00018291 NA other downstream 3121533 6610633 ~ 6652773 (-)
G116165 NA other upstream 139501 9919046 ~ 9924582 (-)
AMCG00018416 usp42 other upstream 341054 10120599 ~ 10136769 (-)
AMCG00018424 tecpr1,LOC102784946,LOC103372311 other upstream 523509 10303054 ~ 10332982 (-)
G116306 NA other upstream 555656 10335201 ~ 10342089 (-)
G116307 LOC108412765,LOC107713954,LOC107665916,LOC107691223,LOC107548703 other upstream 580584 10360129 ~ 10385216 (-)

Expression


Co-expression Network