AMCG00018400


Basic Information

Item Value
gene id AMCG00018400
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9882358 ~ 9895427 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018400
ATGAAGGTTAATGGTGCACCCTGCCAGGTAGACTCGCTCACAAGCCCATACAAGGCACAGCAGAAGGTGGGCTTCTGCAGGATACAGGCTAATGGGCATGCCTGTAGGAATGGCACCGGCTCTGCCCCCAGCAGCGCCAAGCGCAGGTCTAATGGAGTTGTGCCGCACACGAGCAAGAGCTCCGACTGCGGCACGGGCTGGCACGTGGGGCCGGCCAACCAGAGGGGGGCAGGGAAAGTGCTGGTGACGGGGGGTGCTGGATACGTCGGACACAGTCTGGGCCGAGCCCTGGCCGTCAGTGGCGTGTCGGTCATCCTCTTGGACCTGCTGAAGCCCAGATGGGAAATCCCACAAGGAGCTGTCTTTCATCAGAGCGACATTAGAGACTACGATGCTCTCTTTACAGCCTGCGAGGGGGTGGACTGTATATTTCACACAGCCTCCTACGGGATGTCCGGCCCAGAGCAGCTGAAGAAAGAGCAGATTGAATCGGTCAACGTTTGGGGGACAAGCAATGTCATTAATGTGTGCACCCAGAGGAGCATCCCCAGGCTCGTGTACACCAGCACGGTGAATGTGGTGTTCGCCGGCAGTCCCATCGAGCAGGGCGATGAAGAGACAGTCCCATGTGTTCCTCTGGACAAGTTGGTGGATCATTACTCCAAGTCCAAAGCCGTAGCAGATCAGATGATACTGTCTGCAAACGGGAGGACACTGAAGGATGGAGGTTTCCTCCGAACCTGTGTCCTGCGCCCCCCCGGCATCTACGGGCCTGGAGAGCGACGGCACTTACAGAGAGTAGCAGTCAACATTGAGAGACGGCTGTTCAGCTTCAGCTTTGGGAACCGCAATGCCAAGATTAACTGGGTGCACGTGGATAACCTGGTGATGGCGCATGTGCTGGCCGCAGAGGCGCTGACAGCAGGGAAGCACTTCGTCGCCAGCGGACAGGCCTACTACATCAATGACGGAGAGGCGGTCAACCTGTTTGAGTGGTTAATGCCTCTGtttgaGAAGCTGGGCCACAGTCGGCCTGTGATACACCTGCCAGTCTCCTTGGTTTACACTGCAGCTGTCCTGATGGAGTGTGTGCACGTGGCCCTGAGGCCGGTCGTCCAGGTGCCACTGCTCTTCACCAGGAACGAGGTGAGAAACATCGCCGTCACCCACACCTTCAAGATCGACAAGGCCTGCAGGCAGCTGGGCTTCTGTCCCAAGAGGTATGACCTGGCCGACTCGGTGCACCACTACCTGAAGACACGGCAGCCGCGGCCCGGCCTCCTCCTGCTCTGTTTCAGGGCCGGCCTGCTCTTCCTCAGCCTGGTGGCTCTGCTGTTCTTCTCCTGCTTCTGGCAGGACCGGTCTGGGCAGGAGAGCTCCAACACCACGCTGTCCTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018400 True 1398 mRNA 0.59 11 9882358 9895427

Neighbor

gene id symbol gene type direction distance location
AMCG00018398 NA coding upstream 1667 9846901 ~ 9880691 (+)
AMCG00018399 c16orf52.L,c17h16orf52,C20H16orf52,LOC108258941,LOC106518731,LOC107675623 coding upstream 48814 9825486 ~ 9833544 (+)
AMCG00018402 NA coding upstream 93584 9781600 ~ 9788774 (+)
AMCG00018386 si:ch211-256e16.3,LOC106601741,LOC105026145,LOC107674048,LOC107552129,LOC108412900,LOC107717492 coding upstream 107878 9768768 ~ 9774480 (+)
AMCG00018389 NA coding upstream 121731 9755746 ~ 9760627 (+)
AMCG00018401 NA coding downstream 4535 9899962 ~ 9925946 (+)
AMCG00018397 polr3e,LOC106589521 coding downstream 31529 9926956 ~ 9943301 (+)
AMCG00018396 NA coding downstream 64794 9960221 ~ 9968405 (+)
AMCG00018407 NA coding downstream 120519 10015946 ~ 10025490 (+)
AMCG00018415 NA coding downstream 193995 10089422 ~ 10094644 (+)
G116088 NA non-coding upstream 134971 9689765 ~ 9747387 (+)
G116035 dnah3,LOC107561106 non-coding upstream 263453 9618670 ~ 9618905 (+)
G116034 dnah3,LOC108263105 non-coding upstream 268577 9612982 ~ 9613781 (+)
G116028 NA non-coding upstream 303261 9578837 ~ 9579097 (+)
G116027 NA non-coding upstream 304758 9577396 ~ 9577600 (+)
G116199 NA non-coding downstream 137126 10032553 ~ 10041833 (+)
G116214 NA non-coding downstream 224750 10120177 ~ 10121558 (+)
G116264 NA non-coding downstream 319960 10215387 ~ 10216789 (+)
G116300 NA non-coding downstream 449308 10344735 ~ 10345082 (+)
G116301 NA non-coding downstream 455537 10350964 ~ 10351562 (+)
AMCG00018380 NA other upstream 269440 9606661 ~ 9612918 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 317794 9562061 ~ 9564564 (+)
AMCG00018374 NA other upstream 369122 9512314 ~ 9513236 (+)
AMCG00018369 NA other upstream 396212 9480952 ~ 9486146 (+)
AMCG00018368 NA other upstream 435214 9439657 ~ 9447144 (+)
AMCG00018405 NA other downstream 108846 10004273 ~ 10012673 (+)
AMCG00018406 NA other downstream 149025 10044452 ~ 10046523 (+)
AMCG00018422 NA other downstream 362378 10257805 ~ 10292261 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 1356932 11252359 ~ 11256165 (+)
G116585 rbbp6,LOC107689611 other downstream 2070820 11966247 ~ 11970778 (+)

Expression


Co-expression Network