AMCG00018401


Basic Information

Item Value
gene id AMCG00018401
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9899962 ~ 9925946 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018401
gccgTGCGCCGCGCTGGCAGTGGAGGACGGGACAGGGAACAGACAGCGCTCCGGACACCCGATCGCATCGCCCGCCCCTTCTCCCCGCCCCTCCGCTCTCCCTCCTACCGACAGACAGCGACACAGGCTGGGCGAGACCCGGGTCCTGCACACGGCTTCAGTGTCCGTCCGCCGCGGCTCGTACAGCACAGACCGCGGAATAAAGGCCAGCTTTGGCAAGAGTCGCCTCAGCTGCGCTCCTGTGCATCGGAGATCAGCCCTGCTTTTCATATCCAGCAAGCTACGCATCCGGCAGCCGAACTGTCACTGCTGTGTCATAATAAATAGTCTGTGAACGCTTTTGTCAGCGCTGGTGGTGAGCCAGTCAACAGAGAGGGCCAACCAGTGACAGCGCCATGGCGGACGAGGAGATGATGTTCAGCATGGAGAGGCTGGGCAGTGGGCAGGGGGGCGGCTGCTCAATGGATGACCCTGAAAGTGACGAGGAGGAAAACTACTACATCTGCCCCATCACCGACGACCCTGCCGAGAGCCAGGCCAAGAACATCTGCAACTACCTGAAGAACCTCATCCACAACGAGCAGTACACCTCAAGCCCCTCGCCCAAGAACTCCTTCAACGTCAAGaaagaaaaagagcagCGGGCTGTCAGGTTTGCCGCGTTGTCTGAACGAGGTCGGGAGACCTGGAAGCATGCCATCCGGAAGGCCAAAGCCATGCCTGACCCCTGGGCCGAATTCCACCTGGAGGAAATTGAGACTGAGCCCTGCGTGCGCTACAGGTACAATGCTGTGACCGGGGAGTGGGCGCAGGACGAAGTCCATATCAAGATGTCGGCTCAGCCATTTGGAAGGGGAGCGATGAGGGAGTGTTACAGAACGAAGAAGCTGTCCAACTTCTCTCACAGCCACAACTGGAAGTCGGCGTCCAACTACGTGGCCAAACGCTACCTGGAGCCAGTGGACAGGGATGTCTACTTTGAGGACGTGCGTCTGCAGATGGAGGCCAAGCTCTGGGGAGAGGAATACAACCGCCACCGCCCCCCCAAACaggtGGATATAATGCAGATGTGTATCCTGGAGATGAGTGGGCGCCCGGGGAAGCCCCTGTACCACCTGGAGCACTACATCGAGGGCAAGTACATCAAGTACAACTCCAATTCCGGCTTTGTCCGCGATGACAACATCCGCCTCACGCCCCAGGCTTTCAGTCATTTCACTTTTGAGCGATCGGGACACCAGCTGATTGTGGTGGACATCCAGGGGGTGGGCGATCTATACACCGATCCCCAAATCCACACAGAGAAGGGCACCGACTTCGGAGATGGCAATCTGGGCGTGCGAGGCATGGCGCTCTTCTTCCACTCCCACCTGTGCAATAAGATCTGCAAGAGCATGGGCCTGACCCCCTTCGACATCTCCCCCCAGGAGAGGGCCATCCTGGACTGCACCAACAAGCTGCTGATGTCTGCACAGACGGTGCTGCGGGGGTGTGAGGAGCTTTGTGGGAGCCCCCGTGTGCGCACCATCTCCGGGAGCCGCCCCCCGCCTTTGCTGTCACGCCTGTCTGAGACGTCCTCTGCCGACGAAAGTCTGAGTGACAGGGCCTTCGACTCGCCTCCCTGCTCCCCTGCCACCGCCCACTGTGATTCACTGGGGAAATCACCACTCGGCTGGTGTGTGCTGAACGAGATGGAGAACTTTGTGAACGAGGCCAACAACAACACCCTGCAGCACCGGGATTCTGAGAGCGGAGGGGACAGCGGCTACCCTAGCGAGAGGCGCAGCGAAGGGGACGATATGGAGCACAGAGACAGGGCCAGTTCGCTGAGTAGCCGGGGGCCGTACGAATCGGACGAAGACAGTATGAGAAGGAGAAGAGAGACAATCGCCACCAAACCCTCCTTCTCTCCTATAGGCAGCCCCCCCATCAAACCGGTGATTCCTGTGTGCATGCTGATTGTCTTAGACCCGTCTTCCAGACTTCACAGTGTAATTGTGGCTGTTTTCTCCCAGCTGACAGATGAGAAGTGGAGTTTCTTCCACACCTCACGCTCCCACATCCACAGGCCATCCTGCGTGGCTGTGGAAGTGGAGCGGCTCAGCAACCTGCAGCTGGAGAAGAAAATCGGGAAGTCCATCCTGGGCAAGGTCCACCTGGCGATGGTGCGCTACCATGAGGCTGGCCGCTTCTGCGAGAAAGACCAGGAGTGGGACCGAGCCTCGGCGCTGTACCACCTTGAGCACGCCGGGCTGTGCGGGGAGCTGGAGGCCATCGTGGTGCTGGGTCTCTGCCACCTGCAGCTGCCCCACCACATCCTGCCCGAGGTCACGCTGGAGGACATCAAGGAGAACAGGAATAAGGGCTTCCAGTACCTCCTGCAGGCTGCTGAAGCAGGAGACAGGCCCTCCATGATCCTGGTGGCCAGGGCCTTTGATTCAGGGATCAACCTGGCCAGTGacagGACTCAGGACTGGAAAGAGGCGGTGCACTGGTATGACGCCGCACTCAACATGACGGACTACGACGAGGGTGGGGAGTTCGATGGCATGCAGGACGAGCCACGGTACCTCCTGCTGGCGCGGGAGGCCGAGCTGTACCTGAGTGGCGGCTTCCAGCTGGACAGTGACCCCCAGAGGGCAGGAGACCTCTTCACCGAGGCCGCCGACGCAGCCATGGAGGCCATGAAAGGCCGGCTGGCCAACCAGTACTACATGAAGGCTGAGGAGGCCTGGGGGATGATGGAGGAGTGAGGCTTCCACAGGCCAGAAGAATGAGCCAAGGACAGAAATGACGAGACTGTTAAACCCAACCATAATCGCAGACGTTTCATACGAAGCTGTTTACAAATCTGATGTAGCCTAGTCTTCAGATAGGgctctgttgttgttgtatattttttgtttgtgtatgcaaTTGTCCTGGATTGCAGAGGGGTTaggggggaggtggggagggagaGTTAGAAGCTGTACATAGAAATAATGGtgcaggtttgtatttttctattcgTGAAACGGGACTTCACAGTGGAATGGTGGCATGAACCCGGAAAAGTCTGGAAAATTCgctcttaatttgttttctttagaatTCCTGACCTATAGCTTGTTCTGATTGTAGAGATACTAAAACACCCAATCGCCTGGTTCCCTTTTTTAATATCTACTACCTTTGCATTTtttgctctgtattttatttttatagcagtCCTTTCCTAGACTCTCAAACTATAACTAAGGTCCAGATTCTACAATAAACCTCAACCCACCTGACTTTACAAATCCAGTTCTTCACTTCcatttgagaaaacaaaaagaaactgatAGCCACCCTCAAGGACTGGTTTACAGTAAGCCCATTGGCAGGGTTAATGCAGGTCTTGGTTATGGTTATATATACAAGAACTAAagaacatggaaaagaaaaaaaaaagtttacataaatataaatctacaaaaaaaagttattgtttaattacatttttatatttaagaagatttgtgtttgtctgtttattggTTGAATGGTTTCCAAAGCTTTGGTCTGTATGGTTAGTTCTGTTGGGAACTAATGAGTTATACTGAGTTCTCGCATGTGAAATGTGTCCCTGTTCTAGTTAGATTGTAGCCAGACTGTTAGATCTATACCTTCTGTATTGTGATGAGCAATGAGAATATCTTATTTAGGCATGGATGTGTGCTTTTTCTAAACATTCAggaataataaagataattaattttgaaaccTGAGACTGATACTGTTTTATTACTTGTTTGTTATGTCTAAGCTCTGATAATAAAGTTGTTTTGCCTTA

Function

GO: NA

KEGG:

id description
K08292 EEF2K; elongation factor 2 kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018401 True 3817 mRNA 0.53 20 9899962 9925946

Neighbor

gene id symbol gene type direction distance location
AMCG00018400 NA coding upstream 4535 9882358 ~ 9895427 (+)
AMCG00018398 NA coding upstream 19271 9846901 ~ 9880691 (+)
AMCG00018399 c16orf52.L,c17h16orf52,C20H16orf52,LOC108258941,LOC106518731,LOC107675623 coding upstream 66418 9825486 ~ 9833544 (+)
AMCG00018402 NA coding upstream 111188 9781600 ~ 9788774 (+)
AMCG00018386 si:ch211-256e16.3,LOC106601741,LOC105026145,LOC107674048,LOC107552129,LOC108412900,LOC107717492 coding upstream 125482 9768768 ~ 9774480 (+)
AMCG00018397 polr3e,LOC106589521 coding downstream 1010 9926956 ~ 9943301 (+)
AMCG00018396 NA coding downstream 34275 9960221 ~ 9968405 (+)
AMCG00018407 NA coding downstream 90000 10015946 ~ 10025490 (+)
AMCG00018415 NA coding downstream 163476 10089422 ~ 10094644 (+)
AMCG00018412 LOC108437157,LOC107710695,LOC102303741,LOC101486233 coding downstream 174978 10100924 ~ 10120054 (+)
G116088 NA non-coding upstream 152575 9689765 ~ 9747387 (+)
G116035 dnah3,LOC107561106 non-coding upstream 281057 9618670 ~ 9618905 (+)
G116034 dnah3,LOC108263105 non-coding upstream 286181 9612982 ~ 9613781 (+)
G116028 NA non-coding upstream 320865 9578837 ~ 9579097 (+)
G116027 NA non-coding upstream 322362 9577396 ~ 9577600 (+)
G116199 NA non-coding downstream 106607 10032553 ~ 10041833 (+)
G116214 NA non-coding downstream 194231 10120177 ~ 10121558 (+)
G116264 NA non-coding downstream 289441 10215387 ~ 10216789 (+)
G116300 NA non-coding downstream 418789 10344735 ~ 10345082 (+)
G116301 NA non-coding downstream 425018 10350964 ~ 10351562 (+)
AMCG00018380 NA other upstream 287044 9606661 ~ 9612918 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 335398 9562061 ~ 9564564 (+)
AMCG00018374 NA other upstream 386726 9512314 ~ 9513236 (+)
AMCG00018369 NA other upstream 413816 9480952 ~ 9486146 (+)
AMCG00018368 NA other upstream 452818 9439657 ~ 9447144 (+)
AMCG00018405 NA other downstream 78327 10004273 ~ 10012673 (+)
AMCG00018406 NA other downstream 118506 10044452 ~ 10046523 (+)
AMCG00018422 NA other downstream 331859 10257805 ~ 10292261 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 1326413 11252359 ~ 11256165 (+)
G116585 rbbp6,LOC107689611 other downstream 2040301 11966247 ~ 11970778 (+)

Expression


Co-expression Network