AMCG00018405


Basic Information

Item Value
gene id AMCG00018405
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10004273 ~ 10012673 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018405
CTCCTTTTCTAGTTGCACTTCCCTCTTTGTTACTTCAGTTCAACAGAGAACATCAGCTGGCTCTGTCCCCGGCGCGCGAGAGAAAGGCAGTCTGGTCTGCAGTCTGACCGAGCACCAGCCAAGCCAAAATCActcgtttttttaatttaacgaCAAAGATTGTTTCTGGAACTTGTCAGAacagaaaagcaagaaaagtaACACAAAGTCCAGTTGCTCAGTAACAACCAACCGAGATGGAGGAGATGATACATGAGTGCTTTGTGTTGGATTGTCTCTCCCCTCAGTGACCCCTGGACTCTGTGAGTTGGCTGGCTATGGCAGGAGCTCCCAGAAGCCCTCTGGGCACACCACACTTCCTGGGCCTGCTACTCACACTCACCTGTGGTCAAGATGTGTGGGGCGCAGACCACTGCACTGTACAGGTGAGACAGCTGGCCCGGATGACAGTGGAGGAAAACGTCAGGTCCGCCACCATCCACTGTGACATCAATCCCACCAACTGCTCGGGCGATCGTCAGTTCTTCTGGTTCCTGTTCCTGGAGGCCTCGCACAGGGAGCTGAGCATACAGGGCCCCAAGTACACCTTGGCGGAGTCGTCTCTGATCATCAGCCCTGTCCTGCGCAACGATAGCGGCATCTACTACTGTGCGGTGGCATTCAAGGAATCCTCTTCGTATGCATCCAGGGGCACTGGAGACGGTACAGTCCTGGTTGTGAGAGACAGCTTCTACATTGCCCATCCTAAGGGGAAGGCGCTGCTTTGTACAATTCTGGTGCTGCTGGCCCTGTACAGTGTGGCCATCAGCATCCTGCTGATTCGTAAGAAGACCTGCCAACGTAGATGGACTCACCGAAGAAGCAGGGATGACACTTCTGGAAAGAGAAAGGGCGGCTCCACCAGGAGGAAACACTTTGGCGCCGTTGTGCAGGAGCTGTACGGCCGGAAGAACCCACGCAGGAACGCCAAGACCACCACCAAGACACACTCCCCTTCCAGCAAGTTGGAGGAGCCCCCCTCTCCCTCGGCCGCAGATGACATTTATCAGAACATGTGACACACGAGACAACAGCTGGGACAGAGGGTCAGTCCTCAGTGACATCACAAAGAGGGGGTGCATctccaggccacagcccagtcCCCATCCAACCCCCCTCAGGCAGGTGTACTGAAGACTGGATAGGACGACTGGTTAAATTAATCAGAACCACTGAGAGGATTTGTGAAAGTGTACCACAAAAAAGTGAAGATGGATTTTTGACTGAGGaaattattttgggggaaagtcaccttggaaaaacaaaactgaactgctATATATCAAAGCCTATGAGATTATCTGCTTCGGAGTCAAAAACTTGCACAGAACTGAGCTAACTTGTCCACCTGTGCTGTATTCAAAGGGAGGAGGGGaaacagagatacagagagtggatgacagaatgagagagagagattcagagGCAGAGATAAAGATGCACAGAGACAAAGAATGAGAGTAATGGAAGGAGCATCACCAAAAAtacagaggagagagatggagataaaacattaagcaaaaggtaaaaaaaaagacatgaagaGCAACAGAGACATGGGGAAAGACAGAAATGGAGGGatacacagaaagagaaaggcGAGTGGAAAAGAGAAAGACTGCTTCAACCTTCTTCAAGTATTCAGGGCATCCTATGCTTTtctaaagtaaatacataaactctTTGATAAATTGCAtgaatgctttggcaatactcaTACTGGTCTTGCCAATAAAGCgctttgaatttgaatctgaatttgaGAGAGACTACTTTTTTTGAGAGAGAAAGCAGTATACAGACAAGACAAAGAGAtacagagtgagacagagacagatggagACACATATGAAGTGAAAGAGATagattaaaaagtgaaattatgAGAGACATCAAGAAAGAGAGGGggcaaaagaaagagaaaaaattagATTTATGGAGTGAGATGGAAAGAGATACAGACAGAGGATGTGAGAGACACAGGCAGGCCGACAGCtaaagaaatccagagagagagattaaatgaGACCGACAgatgcagagagacagacagacagagagattaAGTGAGACAGGCACAGGGTTCAGTTTACATACCAACTTCCACATAGGGACTGAAGGGCACCACGGTGGCCAGCAGCAGTCTGCCCGTCCCAGGCTCCAGCATGCGCCTGATATCCTGCAGCAGGGATAGCGGCTGGTCACAGCGGTCCAGCAGGTTCAGACAGCTGATCACATCATAGCGGATTCCTGCGCTCTGCCACTCATCCACCCCCAGCACCctgcaggagggagggagagagtgatgAAACTAAAATCTAAACATTAGCAGGTCTTTGTGACAATGCTGGCGATTATGCGTACTTCAGTCATGccaaatgtgctttaagtgacaAGCTAAAAATGGTTGTTACAGGGACTTGCGTTGCTCTCCATCCAATTGTCATGCAGGTTCCTCTTAATACCAGCAATATAATTCACTGCAAGGGGAGTGATCAAAATGTGGTTACAAAACCATGTGGGGGGAATAAAAGCTGCAATTATCAttacacacacaagacaaaaaagcatctttaatgttttcaaacaatTATTGTGGACATAGGCACTGTTCAAAACATGTCAGACTTCCATTTCCCTCCGGCAGTACGGCAAGTCCAACTGGACAAAAAAGCTAAGTGCATGTCTATTCAGCCTTACCCTTTTAAATTTGTCACTTAAAGCAGGACTTTTGGGACAACTGACACTGTTATGTAAATGTAGCAATTTGAGAGTTGTATTGATTATTTCACCAGGAGGTTCCGTTCTCATGTAGGATGGGGAAAGAAACTTAAATCCTAATTAAAGGTAGACTATAGGCAGGCCCCATTTTATGTtactttctgttctgtttttggaCTCTGCAGACAACAATCATTACTCATGATCAGAGATTGTTAATGAATAGACAGGAACAACACGGCAAGAGATTAAAAGGGTAGGCCAGATTTTTGTAACCTGTTTGCTGGACTTTGCCCTGACTCCCAGTCAAATACCTCTGCCATTCTGTAATACATATCCTGTGATCTATAATGTCCAACTTTTCAGCTGGAAATTGGCAGCTC
>TU145520
acTGCCGGTACTGCCCTTCCATTGATTGAAAAAAGgacattttgaattgaaaattTCCTgagatataaagaaaaaattataataataattaattttacatgaaaagaaatgtgaacGCATATGGCCAGTGGCTCGGTGAGTCTCTATACCTCCTCTTCTCCTAAGCACAGCTATTGTTTCAGCTCCTCTATCTCTCTTTCCCTGAAGGAGATGGGTTTATGAGGACTTAACCAACACCACTGTACATGAACACAAAATATTGCTTATTAAATGCACCTTGGAGCTCCcgagaggaaaataaatgttaccaggaaaaaataaaataaaaatttagaaaatgtgtgtCTATTCACTTAATTAGGATATTGGATTAGTTGTATTGCATTGCCTACAGTGCTTGGACGGGAAGGATTTTAAGATGTCTTTATTTACTATAAAGTAAtcgaaaaaaaacaaaaaatcagttGATGGTTCTGGTTGCTCTTCATAAAGCCTTTGGCTGGAATGTATTGCAGGCTGGGACCCTTGATCAGATCACTTCAGCAGTATTTTATTCCCAATGACTGTGAAATATGTTATTCAATGTCTTGATCTACCGGCAGACGACCGTGGTAAAGATAATGTTCAAAGGAGAGGCAGCATTACTCTCCATTGTCACTGTCGTGTTATGAATGATTTCCTAAACACACTTTTCATGATCTGTAACCCTACCCCGAGGTATCAGCACAATCTCACAGCAACAGTGCATTATGCAGATCGTCTTTGTGGGAAACCATGATCTCCAGCAAAATTAATCCAGATTAAAAACACCACCATTTAACCGAAGTGCAGaagaagaacacacacacaagttcaCCACTGAAAACACAACCGGGTTTGAGTGAGCAGTGGAAGTGTCACTGTGCTTTTCagataccaaaataaaaaaatgaaatgtaaatgaaattgaCTTATTTTCAAGATGCACTTGCTGTCCAAGGTATGAATCCTAAGGGCAGACGGCTGATCTGATGTGGTACCAGTATCTGTGCGTGGCAGTGCCTGGGGTGCAGTGCGGCCCTGAGAGGGGTTACTGCAGTCACTCCAGAGGTCGAAGTACAAACACAGCATCATCCAACATGTAGTAGTCATTGTACATGTCCCCCTCGCACAGATAGGGCAGCCTGGTGACTGCCTCCACCGCAAACCCCGCCTCCAGGAACACCTCATTGGCCAAGCTTGTCACTTGCTCCTCCCATGTCTTTCCCTGAATCTTCAAGTATTCTGTAGGCCGCTCCCACTTTCCACCTGCAACTTCCACATAGGGACTGAAGGGCACCACGGTGGCCAGCAGCAGTCTGCCCGTCCCAGGCTCCAGCATGCGCCTGATATCCTGCAGCAGGGATAGCGGCTGGTCACAGCGGTCCAGCAGGTTCAGACAGCTGATCACATCATAGCGGATTCCTGCGCTCTGCCACTCATCCACCCCCAGCACCctgcaggagggagggagagagtgatgAAACTAAAATCTAAACATTAGCAGGTCTTTGTGACAATGCTGGCGATTATGCGTACTTCAGTCATGccaaatgtgctttaagtgacaAGCTAAAAATGGTTGTTACAGGGACTTGCGTTGCTCTCCATCCAATTGTCATGCAGGTTCCTCTTAATACCAGCAATATAATTCACTGCAAGGGGAGTGATCAAAATGTGGTTACAAAACCATGTGGGGGGAATAAAAGCTGCAATTATCAttacacacacaagacaaaaaagcatctttaatgttttcaaacaatTATTGTGGACATAGGCACTGTTCAAAACATGTCAGACTTCCATTTCCCTCCGGCAGTACGGCAAGTCCAACTGGACAAAAAAGCTAAGTGCATGTCTATTCAGCCTTACCCTTTTAAATTTGTCACTTAAAGCAGGACTTTTGGGACAACTGACACTGTTATGTAAATGTAGCAATTTGAGAGTTGTATTGATTATTTCACCAGGAGGTTCCGTTCTCATGTAGGATGGGGAAAGAAACTTAAATCCTAATTAAAGGTAGACTATAGGCAGGCCCCATTTTATGTtactttctgttctgtttttggaCTCTGCAGACAACAATCATTACTCATGATCAGAGATTGTTAATGAATAGACAGGAACAACACGGCAAGAGATTAAAAGGGTAGGCCAGATTTTTGTAACCTGTTTGCTGGACTTTGCCCTGACTCCCAGTCAAATACCTCTGCCATTCTGTAATACATATCCTGTGATCTATAATGTCCAACTTTTCAGCTGGAAATTGGCAGCTCTTACAGCACAGTGCCCCCTGGTGCCGAACAAGACATGGTTTTGGAATATCAGGTCCAGAGAGGAAGAGTGACACCTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018405 True 3143 mRNA 0.47 7 10006099 10012595
TU145520 False 2375 lncRNA 0.43 2 10004273 10012673

Neighbor

gene id symbol gene type direction distance location
AMCG00018396 NA coding upstream 35868 9960221 ~ 9968405 (+)
AMCG00018397 polr3e,LOC106589521 coding upstream 60972 9926956 ~ 9943301 (+)
AMCG00018401 NA coding upstream 78327 9899962 ~ 9925946 (+)
AMCG00018400 NA coding upstream 108846 9882358 ~ 9895427 (+)
AMCG00018398 NA coding upstream 123582 9846901 ~ 9880691 (+)
AMCG00018407 NA coding downstream 3273 10015946 ~ 10025490 (+)
AMCG00018415 NA coding downstream 76749 10089422 ~ 10094644 (+)
AMCG00018412 LOC108437157,LOC107710695,LOC102303741,LOC101486233 coding downstream 88251 10100924 ~ 10120054 (+)
AMCG00018413 NA coding downstream 125307 10137980 ~ 10150773 (+)
AMCG00018414 pms2 coding downstream 138292 10150965 ~ 10159643 (+)
G116088 NA non-coding upstream 256886 9689765 ~ 9747387 (+)
G116035 dnah3,LOC107561106 non-coding upstream 385368 9618670 ~ 9618905 (+)
G116034 dnah3,LOC108263105 non-coding upstream 390492 9612982 ~ 9613781 (+)
G116028 NA non-coding upstream 425176 9578837 ~ 9579097 (+)
G116027 NA non-coding upstream 426673 9577396 ~ 9577600 (+)
G116199 NA non-coding downstream 19880 10032553 ~ 10041833 (+)
G116214 NA non-coding downstream 107504 10120177 ~ 10121558 (+)
G116264 NA non-coding downstream 202714 10215387 ~ 10216789 (+)
G116300 NA non-coding downstream 332062 10344735 ~ 10345082 (+)
G116301 NA non-coding downstream 338291 10350964 ~ 10351562 (+)
AMCG00018380 NA other upstream 391355 9606661 ~ 9612918 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 439709 9562061 ~ 9564564 (+)
AMCG00018374 NA other upstream 491037 9512314 ~ 9513236 (+)
AMCG00018369 NA other upstream 518127 9480952 ~ 9486146 (+)
AMCG00018368 NA other upstream 557129 9439657 ~ 9447144 (+)
AMCG00018406 NA other downstream 31779 10044452 ~ 10046523 (+)
AMCG00018422 NA other downstream 245132 10257805 ~ 10292261 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 1239686 11252359 ~ 11256165 (+)
G116585 rbbp6,LOC107689611 other downstream 1953574 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 2476794 12489467 ~ 12500054 (+)

Expression


Co-expression Network