AMCG00018411


Basic Information

Item Value
gene id AMCG00018411
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10160464 ~ 10174296 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018411
ATGGCGAagggagaaaagaagaaaaaagtggaTAAGTCGCCACTCGAGGTGTCCTTCCAGAAATTAACGCAGAGCAGCTCCACCGTGGGGTCCGAGCTGCCGGCCGACACCGAGGAGGACTCGGCTCTGACCTCGGCGCCCAGCCAGTCGCCCGTGGAGTCGCCAGCCCCGGCCCCCTGTCCAGACCCGCAGCCCCCGGCACCGGAGATCTTCCAAGAGCCGGTTCTTACTCGCATAATAGTAGAGAGGTTTTACGAAGGAGAAACTTTTCACGGACTCTATCACGGTGAAGGAATTGCATATTTTCAGGGAGGTCATGTTTACCAGgGTATGTTTTCAGAAGGACTGATGCATGGACAAGGGACCTACATGTGGGCTGATGGGGTTAAATATGAgGGGGATTTTTCAGTGAACGTGCCCATGGGTCACGGCGTGTACACATGGCCCGACTGCAGTTCCTATCAGGGCGAGGTGTACGAGGGACTACGCCATGGAACTGGCACGTACAGATGTGGCAACAAGTCCGCCTCCTACACCGGGCAGTGGCATCAGGGGTACCGACATGGAAAGGGAATAATGTACTATAACCAGGAAGGAACATCGTGGTATGAGGGAGACTGGATCTGCAACGTCAGGGAGGGGTGGGGAGTGAGATGCTTCAGCTCTGGAAACCTGTATGTAGGCCAGTGGAAGAACGGCGCAAGGCACGGAGAGGGCAGGATGCAATGGCTGTCCTACCGGCAGCAGTACAATGGGCAGTGGGAGAATGGGATCCAGTACCCCCTGCGGAACGAGTACGTGGGGGCGTTTGTGCAGGGTCTGCGCCACGGTCACGGCAAGTTCTACTACGCCAGCGGAGCCCTGTATGACGGCGAGTGGCAGTGCAATAAGAAGCATGGTCAGGGAAAGTTTATCTTTAAGAATGGACGCATATTTGAAGGCGAGTTTGTAGAAGATCACATGGCTGAGTTTCCAGGATTCTCATTGGATGGAACTCACAGTCCAGACCTCAGTGGCATCAGGACTCACACTCCCCCTTGTGGCGATGATGAAACTTCAATTAGATCCCAAGCACCAGGCTCCTTGGTGCTGGGTCCTGACATGGCTTTAGATATCTGCAGCCTGCTGGAGAGACTTCCTGAAGCCAGCAGAGACACCGAACTGAAGCAGGTGGAGTTTGCTGTTCTAAGGCACATCACAGAGCTGAGGCAGGTGTACAGCTTCTACAGCAGCCTGGGCTACGAGCACTCCCCAGACAACACCTTCCTGCTCACCAGGCTGCAGTTCTGGAGGCTGCTGAAGGACTGCCAAATCCACCAGCACCACCTCACACTGGCCCACGTGGATCGGCTTTGTAaaggTGTTCCTCCTGACGAGATTCATTCCCCATTTGATACCATGCTTCTCAGGACGTTCCTCAGTAACATGATTGTGCTGGCTTACGATATATATCATGAACAGATTGAATCATCAAATCACATTTTAGCATCCTGTTTTTATAAGCTGGTAAGAGAGAACATAATTCCAAATGCAAGGGATGTGAAAGGTACATTCTTCAGCCACCACCTCCATGCTGTCATAGCTGTGAACTACATTGAGAAGAGCTGGGAGATATACAGGGCCTACTGCTTGCAGAACATGAGGGCACCATATGAGCCCTCAATGAAAATGAGACACTTTATACAGATGTTAAAGGATCTTAATCTCTACGGGGAGGAGCTGACAGTTGGGAAGGCCCTGCACAAACTTGCTGCTGAGAACCCTGCCGCCTATGATGGGACCCACAGTAACCTGGAGCTGGAGATGACGTTCCTGGAGTTCTTCGAGGCATTGCTGGGGTGTGCAGAGGTGTGCGGCACAGGGCCAGGCCCCTCGGAGATCCCTGCAGATGTGTGGAAGGCGGAAGACGTGCCCAGAGACTCCCCCGTGGAGGAGCAGAGAGGCAGCCCCTCTcagcacacactgcagccctcTTCACAGACCAGTGCGTTTGTGAACCTGGCAGTGGTCGATCGatgtgcGCGCAGTGGCTCGGCTCTCCAGTCGGCACGCTCGCAGTCTGTGGAAGGTGTGCACAGTGTCTCAGACCTCAGTGTGAGGATGCTGCACTCAATGCCAGCCCTGGCCCCCGCGTGTGTCAGTCCTGGCTCAGACAGAGCTGAAGGTCTCGATGAACGGGAGAGTGAACTGGACCGCTGGATACAACAGGTGCATGTGTTCTTCACCAAGAGGTTCTTCCCAGCGTACGAGTACAGCCTGCTGGTGAAGAAGGAGGTGGCAGAGGAGCGTGAGCGGAGGGTGGTGCGGGCCCGGACAGCCAGAGCCAGGGCAGCGGAGGCAGCCAGCCAGTTTCCAAACTATGAGGAAAAGCAGGACGATTTCAGGAGCTCACCATCCTACTCGGAGGTGGCTATATCGTCAGGACTGAAGAAGCTGTGGGAAGCAGCAGAGGAGAAACAGCgtgaggaacaggaggagcaggAAGGGGAGAGAGTGGAGGCTCAGGAGGAAGACCCTTACCCTCTCCGGTCTCCCGTCCTCACAGTCAGCACCTCGGCCGTCAGGATCACCAAGCCCCCCCCTTCCAGcgggaagaaaaagaagaaataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018411 True 2610 mRNA 0.55 20 10160464 10174296

Neighbor

gene id symbol gene type direction distance location
AMCG00018414 pms2 coding upstream 821 10150965 ~ 10159643 (+)
AMCG00018413 NA coding upstream 9691 10137980 ~ 10150773 (+)
AMCG00018412 LOC108437157,LOC107710695,LOC102303741,LOC101486233 coding upstream 40410 10100924 ~ 10120054 (+)
AMCG00018415 NA coding upstream 65820 10089422 ~ 10094644 (+)
AMCG00018407 NA coding upstream 134974 10015946 ~ 10025490 (+)
AMCG00018425 NA coding downstream 124707 10299003 ~ 10299554 (+)
AMCG00018423 bri3 coding downstream 159225 10333521 ~ 10342424 (+)
AMCG00018426 NA coding downstream 257894 10432190 ~ 10440657 (+)
AMCG00018429 trrap,LOC107699870 coding downstream 322577 10496873 ~ 10562962 (+)
AMCG00018432 trrap coding downstream 400600 10574896 ~ 10609128 (+)
G116214 NA non-coding upstream 38906 10120177 ~ 10121558 (+)
G116199 NA non-coding upstream 118631 10032553 ~ 10041833 (+)
G116088 NA non-coding upstream 413077 9689765 ~ 9747387 (+)
G116035 dnah3,LOC107561106 non-coding upstream 541559 9618670 ~ 9618905 (+)
G116034 dnah3,LOC108263105 non-coding upstream 546683 9612982 ~ 9613781 (+)
G116264 NA non-coding downstream 41091 10215387 ~ 10216789 (+)
G116300 NA non-coding downstream 170439 10344735 ~ 10345082 (+)
G116301 NA non-coding downstream 176668 10350964 ~ 10351562 (+)
G116302 NA non-coding downstream 181676 10355972 ~ 10357357 (+)
G116303 NA non-coding downstream 185386 10359682 ~ 10359903 (+)
AMCG00018406 NA other upstream 113941 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 147791 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 547546 9606661 ~ 9612918 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 595900 9562061 ~ 9564564 (+)
AMCG00018374 NA other upstream 647228 9512314 ~ 9513236 (+)
AMCG00018422 NA other downstream 83509 10257805 ~ 10292261 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 1078063 11252359 ~ 11256165 (+)
G116585 rbbp6,LOC107689611 other downstream 1791951 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 2315171 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 2328727 12503023 ~ 12520331 (+)

Expression


Co-expression Network