AMCG00018416 (usp42)


Basic Information

Item Value
gene id AMCG00018416
gene name usp42
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10120599 ~ 10136769 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018416
ATGACCATAGTTGACAAACCAACAGAGACGTCTGACCCTGAGTCAGGTCAGTCTGAGCGCTCTGGTTCCCTGACCCCGTCTTCCTCTGGAGACATGGATGGCAGTTCGGCCAGCTGGGGCATGGGGTCGTCCCCCTCAGATGCCCCGAAGAGCAAGACCTCCTGTGTGGGACCCACTCCGGGAGCCGCTGTCTATAGCAGCAGCTCATCGGCAGCACCAGAGAGGTCCAAGTCACCCATACACAAGGAGCAAACATTAATGTCCAGTGGTGATGGCATCGCCCTCCCGGAGAAGGTCTTGTTCCCACCAGAGAGGCTCTGTCTTAAGTGGAACCAGGTCCATCGTATTGGAGCTGGTCTCCAGAACCTGGGAAACACCTGCTTCCTCAACTCCGCCCTCCAGTGTCTGACCTACACTGCTCCTCTCGCCAACTACATGCTGTCTCGGGAGCATTCCAAAACCTGTCACGAGCCCGGGTTCTGTATGATGTGCACGATGCAGAATCACATCACCCAGGTCTTTGTTAACTCGGGAAACGTCATCAAACCCATTGGCGTTCTCAATGAGCTGAAGCGTGTTCTCACGCACGTGTTTAATTTGGTCATGGTTTTAGGGATCGCAAAGCATTTTCGGTTTGGGAGCCAAGAGGATGCCCATGAGTTTCTGCGATACACTGTGGATGCTATGCAAAAGTCATGCCTGCCTGGAATCAAGTTGGACCGGCAAACACAGGCCACCTCTCTGTGTATGAGCTGTAAAGCGGTCTCTGACACCTTCGATCCGTACCTGGATGTTGCGTTGGAAATAAAGACGGCCCAGAACATCACCAAAGCGCTTGAACAGTTTGTGAAGCCGGAACAGCTGGATGGTGACAATGCCTATAAGTGTACCAAGTGTAAGAAGATGGTTCAGGCCTCAAAGAGATTTACTATTCACCGCAGCTCCAATGTGCTCACGATATCCCTGAAGCGCTTTGCGAACTACAATGGAGGCAAGATTGCCAAGGATATAAGATATCCCGAGTACCTGGATATACGTCCGTTCATGTCACAGTCCCATGGCGACCCCCTGCTGTACGTCCTGTACGCTGTCTTGGTCCACTCGGGTTTTAGCTGCCATGCTGGACATTACTACTGCTACATCAAGGCCAGCAACGGGCAGTGGTATCAGATGAACGACGCATCCGTTTCAATCAGCGACATCAGATCCGTTCTCAACCAACAAGCCTACGTTCTTTTTTATATCAAGTCTTCAGATCTGAAGAACGGAGGGGACTTTAACCATTCCAGCCGCACACCAGGACAGTCCTCCCCTCGGCCCATCCTCACCCCCCGGTTGGGcggcccccgccccccccctgGTTTCATCGGGCCCCAGCTCCCCCCACACATGACGACTAAGAATTCCAACCACATCAACGGCAATGGGTCTCTGAAAGAGGTGCCCTGCAGCTCCAAGCCCAGTGCCAGCAGCACAAGCGTGTGCAGGACAGCCCCCAGCCTACCCTCCACCGCCGGGCCCCCCCGGCCCCTCAGCCGACCCTCTGGCATTCCCGAACCTGCCAAGAGGCAGAGGCTTTCCTTCCTGATTGGTCAGGGAAAGACGCCCCGCCCAGCCCAGACCCAGCCCAACCTGCACAGCAGCCCTCTTGAGAACCTGTACCGGCCcagctgctcctcctcctcctcctcctcctcctcctccagcactGTCTCTCATGTGCACGCCCagccctcttcctcctcctcctcctcctcctcctcttcctcctcctcctcctcctcctcctcttcttcacaGTCACAGTCTACCTCAGAAGGCCCCCCTGCCTCTGCTGCTACAGCGACCATGTCCAGAGCAGAGCTGCCCCCCGAGCCCCACCCACCTCAGAGCAACGGTGCGCCCCTGGGTCACAGGCCTGCCTTCTTGGTGCCGTACACCGGAGAGTCCTCTGAAGACTCCGACCAGGAGGGCAACACTGGTAGGGTGGCTGCCGAAAACGGTCACGCCAAGCTACCTGCTGTCAATGGCATGAGTGGGACCGCTGGGTCCTCTTGCAACACTATGGCCAAGCCCCCTCCCAGTATGGACACTCAACTCGCACCCGAGACTAATGGCCCCGTGGCCCCCCTGTCTCCCGAGGTGTTTTCTACGGTTCGTGATCAGGAAGTGTCCAAGTCTCTCGGACACCCCAGGGTCAGTTCAGTCAACGTGACAGAGACCGCGACGAGATCAAGCCCCTCTGTCGGCGTCAAGCCAGGTGAGAACAACACCCAGAGTCTGGCAAGCTGCCCCTTGGCGACTCCTAAGAAAGACCCTCTCAAACCTCCCGCTGTCTCGGAGAGAAAACTCGCCAGAGAAGCAAGGGCTAACGATAACCTTGGCGACCTCTCGCCCCTTCGACCCCAGGCAGCCGCTAAGCCTTGCTCTGATCATACACCATTCATTGGCAAGGAATTTGCATCAGGTGGCTCAGCGAAGCAAAGTAAGCTGGATACAACAGTGTCTTCTTGGAAGGCGAGCACTGTGGTCTCTGCAGAGGGTGCTAGCCCTCCTCACTGTGGACTTCCGGGTATTGCTGTTGGCTCGGGAAACCACTTGCCGTGCCATCTTGGGCGTGTTCCAGTCACAGACGATCACACTTCTCTGCCCAGGGCTAAGGACTTAGTCGGGTCTCCCCGTGAGATGGCAAAGGATGGCAGCCGGAAGGGTCCTTTGGAGAATGGAGGGCAGGTCCCCGCAATACATGACTACCTGAGCACTGGGAAGGTGGCCACTACCCTGGACTGCCAATCCAGCATGTCTGGATACAGGGAAGTGAAAGGCAAGGAGTCAGGACCCTACAGTGCAGATGATAGAAAGGCTGTAGATTGGGAGAAAAGCCATAGTCACAGGGATAGGCCAGCTTCTTCCCCTGCCAAGGAGAAAAGCAAACCTGTGTACAAGCATTGGCACCGCGGGGATCGCTCAAGGAGCAGGGAGAGAGCGAGTTACAAGAGGGGCAGCTACCAGAGCGCTTGTCACTCCCGCAGGGACCGGTCCCACAGCCGCGATTGCTCTTACAGGGACCGGGACCGGGACAGAGAGCGGAGGTGGGAGAGACACGGATACCAGAACAGAGACTATCACTACAGGCCCAAAGACGAGAGGGACAGGAGGTACTCGGCAGATAACCGGGACTATGAGAAACCTTCAGGGCACCATTATAAGGACTGGCCACACAGAGAGGAATACTACTACAGGTCCCGCTGGGCTGAGGAGAGTAGAGGAAAGGCCTACAGCAAGCCCAAGTACAGCCACGGCAGGCCAGATCACCTCCACTCACCCccaccttcctcctcctcttcctcgcaCCACTGGGAGCAGTCCCGCCCCCGCGAGGGCCTCAGCCACGAGAGTGGCTCAGACAGGAAGTGCCGGCCGCCGGATGAGTCCTCCTCCTCTGAGAGAAAGGcgaagaaacacaaaaagtccaagaagaagaagaagtcgAAAGACAAGCATCGAGAGCACCGGGAGCGAAGAAGCCAAGCAGACCTGGACTCCTCCGAAGGGAACTCAGACAACAGTTCATGCAAAcgcaagaagaagaaaaagaggaggAGGCATGACGGAGACAGCTCGGACCCGGAGCAATCACGCCACAAGGCTGGAGTCCGGGCCCCGTCAGAGGGGCAGTGTGAGCGCAGCGCTGAGGAGAGTGGGTGCCAGCCCCCCCTTCAGGACAGCTACAGAGCCAGCCGCAAGCGCCGCTCCCAGGACCGGGACCCCCCCCCTCACCCCGAGAAACACAGACGGACCGACAGCAGCCATGCCACAAACCGCACGTCCCACCTCCACCATAACACAGgtaaCAGCTCGTCACAGTCTGACACCGACACTCGCAGATGCTCTTTGAATGGACTGGACTACGAGGTGAATCCCAGAGGTTTAAACGGCAGTGggtcacagacagacagggaggctgtctctctctcccaggggCTGAGCGGGGATGCGTGCAGTGGAGAGGTGCTCCGGAGAAAGACCACGTACCGAAACGGAAAGACTGGGCGCACTAAAACCAGTCTAAGAATATTGCAGAAGCCATCCCAAAATAATATTTCCATGTACAAGAGAAGATCATACTGGATACTGGAAGTGGTGCTTTAATCATTGggaatactgtatttttaccacagattttgttttcttttcttttttaacttcttgttttttaactttttatctgtggatttgttttattttattttactcttcaGTGGTGGAAACTAAAACACTTGGGAATctaaaaaaatgtagaatttaaatatatttaatgaaataaagaagaaGCCCTGTATCTTAACATCTCAGCTGCTGCTCAACTAAAGACTCAGGACTTGTTTCTtacttgtgtataaatgtgactttttttttcttcttcgaGTGCAAATCCCTGGAGGGGGGGACCCCCAGAAAAAccaacaactgaaacaaaacaaagactgaatgaatgaattaatgaatgaatgattggGAAGACTAGTCTTTTGTGCTGAAGTATCAACATTTTCGGTATGTCTCATATTAAGAATCAAAATGTAAGCGGTCATGCATCAATCCAGATGTCACCACATCCACTGATGGACGCCACACGGGTCACTGTGTCTGCTGCACCGTTATTTTTAAGCTAAGAGGACTtgagaatgtttttgtttttttctctgcagaCTAATATTCCATCAACCTCACTGACAAATGAAGAAATAGATTGTCAGTTATGTCTCAATGACAGCAAATTAATATCAACATTAAATCTTGCATCATGTTTTTCTCATGTATTTTATGGAAAtagatgtattgctttttttttttaatccagttaAGTTTCTAGCTTCAGAAGAAAATGATActgtgaatttattttgaactgtactatcagttgttgttttgttttctataaaaaaGGTCCTGTATCAGGAAAACCAAtagaaaagtgatttaaaaaataataaaattaaaaaaaaaaaaaacttccacaTCATAGTTC
>TU145571
GTGCGTTTGTTCTCGGTGTAGACCTGGCGGGAGCACGGGCTTAGCGGTGTGGGCGCACATCCGAGCTCATTGGAGACCTTTTGAAGTACAACCCGGCTCCTCCACTCTTCCTCCCAGTGTGGTGCCGGGGATTGAGAAAGACACCggtgtatttaaaatgtctaacCTCTCGTTTTGAAAAGGCGGTGTGCAGCGGAGGCGGAACTGGATGGGCCCGGCTGGGGCTGGGGTGTGAATATTCAGGCGGCAGTGGGTGCTCCGCCTCGCTGGGTCTCGGCTAGCGGCGCACGCTTTGTGGGGAGATGTCCGTCTGCTGCGCCGCCGCGGCTCGTCCTGGTTTCGGCTTTATTGTTGGCTTTCGCCGTTGCCATGGCGTTGCCTGTTTCTCGGTGCTCCGTGTTTTTGAGCTCAGATCCCCGGCTTGTTTTATGACGAAAGTTAAAAGCGATGAACGATGACCATAGTTGACAAACCAACAGAGACGTCTGACCCTGAGTCAGGTCAGTCTGAGCGCTCTGGTTCCCTGACCCCGTCTTCCTCTGGAGACATGGATGGCAGTTCGGCCAGCTGGGGCATGGGGTCGTCCCCCTCAGATGCCCCGAAGAGCAAGACCTCCTGTGTGGGACCCACTCCGGGAGCCGCTGTCTATAGCAGCAGCTCATCGGCAGCACCAGAGAGGTCCAAGTCACCCATACACAAGGAGCAAACATTAATGTCCAGTGGTGATGGCATCGCCCTCCCGGAGAAGGTCTTGTTCCCACCAGAGAGGCTCTGTCTTAAGTGGAACCAGGTCCATCGTATTGGAGCTGGTCTCCAGAACCTGGGAAACACCTGCTTCCTCAACTCCGCCCTCCAGTGTCTGACCTACACTGCTCCTCTCGCCAACTACATGCTGTCTCGGGAGCATTCCAAAACCTGTCACGAGCCCGGGTTCTGTATGATGTGCACGATGCAGAATCACATCACCCAGGTCTTTGTTAACTCGGGAAACGTCATCAAACCCATTGGCGTTCTCAATGAGCTGAAGCGGATCGCAAAGCATTTTCGGTTTGGGAGCCAAGAGGATGCCCATGAGTTTCTGCGATACACTGTGGATGCTATGCAAAAGTCATGCCTGCCTGGAATCAAGTTGGACCGGCAAACACAGGCCACCTCTCTGGTCCATCAGATCTTTGGAGGTTACTTGAGGTCCAGAGTGAAGTGTATGAGCTGTAAAGCGGTCTCTGACACCTTCGATCCGTACCTGGATGTTGCGTTGGAAATAAAGACGGCCCAGAACATCACCAAAGCGCTTGAACAGTTTGTGAAGCCGGAACAGCTGGATGGTGACAATGCCTATAAGTGTACCAAGTGTAAGAAGATGGTTCAGGCCTCAAAGAGATTTACTATTCACCGCAGCTCCAATGTGCTCACGATATCCCTGAAGCGCTTTGCGAACTACAATGGAGGCAAGATTGCCAAGGATATAAGATATCCCGAGTACCTGGATATACGTCCGTTCATGTCACAGTCCCATGGCGACCCCCTGCTGTACGTCCTGTACGCTGTCTTGGTCCACTCGGGTTTTAGCTGCCATGCTGGACATTACTACTGCTACATCAAGG

Function

symbol description
usp42 Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination and regulation of apoptotic process. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol and nucleus. Orthologous to human USP42 (ubiquitin specific peptidase 42).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K11855 USP36_42; ubiquitin carboxyl-terminal hydrolase 36/42

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018416 True 5032 mRNA 0.53 19 10120599 10134619
TU145571 False 1604 TUCP 0.54 10 10129560 10136769

Neighbor

gene id symbol gene type direction distance location
AMCG00018410 rac1a,rac1,LOC105026138,LOC107569188,LOC107596579,LOC106601744,LOC108437155 coding downstream 79083 10029502 ~ 10041516 (-)
AMCG00018408 NA coding downstream 105706 10004233 ~ 10014893 (-)
AMCG00018409 NA coding downstream 118449 9986174 ~ 10002150 (-)
AMCG00018404 kdelr2,LOC103354828,LOC102232388,LOC100710456,LOC107091462,LOC104935524 coding downstream 139603 9973285 ~ 9980996 (-)
AMCG00018403 NA coding downstream 160539 9944688 ~ 9960060 (-)
AMCG00018417 NA coding upstream 10763 10147532 ~ 10150509 (-)
AMCG00018418 ccz1,LOC103028980 coding upstream 37651 10174420 ~ 10189358 (-)
AMCG00018421 pvalb8,LOC103030409,LOC108412252,LOC103372314,LOC107548708,LOC107691229,LOC103141687,LOC107724728 coding upstream 59440 10196209 ~ 10198405 (-)
AMCG00018419 LOC108273406,LOC108431966,LOC107724689 coding upstream 66010 10202779 ~ 10218488 (-)
AMCG00018420 NA coding upstream 86903 10223672 ~ 10231201 (-)
G116136 NA non-coding downstream 332020 9784430 ~ 9788579 (-)
G116065 NA non-coding downstream 592863 9527492 ~ 9527736 (-)
G116058 NA non-coding downstream 638447 9480910 ~ 9482152 (-)
G115949 NA non-coding downstream 904782 9200800 ~ 9215817 (-)
G115874 NA non-coding downstream 1258222 8861873 ~ 8862377 (-)
G116236 NA non-coding upstream 6656 10143425 ~ 10144599 (-)
G116255 NA non-coding upstream 26509 10163278 ~ 10163522 (-)
G116256 NA non-coding upstream 32479 10169248 ~ 10169622 (-)
G116352 NA non-coding upstream 472249 10609018 ~ 10671019 (-)
G116355 NA non-coding upstream 601782 10738551 ~ 10739008 (-)
G116165 NA other downstream 196017 9919046 ~ 9924582 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other downstream 341054 9774306 ~ 9779545 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other downstream 862397 9239812 ~ 9258202 (-)
AMCG00018339 NA other downstream 1443791 8666737 ~ 8676808 (-)
AMCG00018344 NA other downstream 1471792 8641896 ~ 8648807 (-)
AMCG00018424 tecpr1,LOC102784946,LOC103372311 other upstream 166285 10303054 ~ 10332982 (-)
G116306 NA other upstream 198432 10335201 ~ 10342089 (-)
G116307 LOC108412765,LOC107713954,LOC107665916,LOC107691223,LOC107548703 other upstream 223360 10360129 ~ 10385216 (-)
AMCG00018431 trrap other upstream 425785 10562554 ~ 10580105 (-)
AMCG00018437 srebf1,LOC107713935 other upstream 924859 11061628 ~ 11083780 (-)

Expression


Co-expression Network