AMCG00018423 (bri3)


Basic Information

Item Value
gene id AMCG00018423
gene name bri3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10333521 ~ 10342424 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018423
ATGGTAAAGCCTCATCCTTCTGCTGTCTCCCCATCCTCTGTGGAGTGCCACATGTCCTCGTCCACGAAGGAGCACCGAGGCCATGGAGAAGGGCAGTCAGATGGCAAACCCACAGGGCCATCCTGGCACTGCAGTCTGGAGGAGGCTAGGGACTCTACGTCCAGTGGCCCTTTTGACTCCACAGTCAATGCAGAGGAGGAGGGGAAACCAATCAACACGTCGCACTCGGATATGGATAGCAAGCCGCTCCTGCAAGACAGACCCCCGGCTTACAACGCCGCGCCCGCGGGGTATGAATACGGGCAACAGCAGAACTACGGTGCAATTCCCACACCGGCGCCCCCGCCGCCCGGCTTTCAGCAGCCACCGCCACCGTATCAGTATCCCGATGGACAGGGGTATCCCCAGCCTCCCCCACAGATGCCACCTGTTGCCCAACAACCAAACTACCCTGGCACTTACACCATCATCCAGCCCTCTGTGGTGGTGGTAGGGGGCTGCCCAGCTTGCAGAGTGGGGGTGCTGGAGGACGACTTCACCTGCTTGGGGATCCTGTGTGCCATCGTCTTCTTTCCCATCGGCATCCTGTTCTGCCTTGCTCTGCGCCAGAGGAGGTGTCCCAACTGCGGGGCCACCTTTGGTTAGAGGGATCAAACTCTTCGGCTTGTTTTCAAGTCCAACCTGTACCACTTTATACTGttctaattgttttcttttgtttgttacaaTCAGTGCCATGTATGTCCTACTGAAGAAGTCTCTATAGGTCGTCATGGCAAgactaattatttttaaaagagcatGTGAGCTTTTCTCNNNNNNNNNNNNcccccccccccccggacaCAATGTATGAAataagagtttattttttattttaaatccatgtAAACTTATAAATTCCCAGATTCCTTCCTGTatttgtcagtcagtcaatggtgcctttacacacacacacaatcccccCACAGGTTTTGGTTACATggcatacaatttaaatatttgtttggttttggacTGCACCAATAATTTTTGGGGAGTGTTTTGCGTTCCAAATGAAAATTAATGCGATTCTGGCCTGAAGCGCTCTTTTCTTCCACTGTGTTATTTGGGTTTACTGCAGCCTGCACTGTTTAATACGATAccctttattttacattaaagttGGACTTGCTGCTGAGTTCCAGAACACCATTGCTAGTCAAGAAGCAGGACTGTAAAAGCCTGATGCAGAGTTCTAGGGGGCTATAGAGAGATTCCCAtttctgtatgtttaaaaacaccCAAAAATAGCAGAGCAATGCTGACCTTTTTTTCAAAAGGTAGGGATCAATTTTTCTTGCAAATCGAGGTATCTTAATCTGTCTTTCGGCCTTGTGCGTATTGTACATACATTGACGCAAGCATGACAAAGGACAGCAGCTGCTACcatgtacagtaagagactcgCCGATACAGGGAGTACCTCGTCACCAATGTGTGACATCACGCCCAGCTTTTTCTTCTGGCTGTAGCGGGCCAGGAGTTTGTATCGGCCATGTCATGCACATAGGGGAGTCTATCGTCTCAGTGTGTTAAAGAGCTGAGAGTAAAGCTCACCACCTGTACAGGTCAGAGTTCATTGCAGCCGTAAATGCTGATGAGAAATGCTTTGCCATACGGTTCATTCTCAGCTGGGTTATGTTCTGTAAGATTGACTACAGCTGATTGGTActccctgtgtttttttttttttttgttcttctcatttatgttttgttaaatctCTCAACAATGTCACAAACAATTTGACTTGCTATAACCAGAGCAGTTTTCCACAGCTGCCATCTGGTCTGGGGCCATGCTACATCTGcactgattttttgtttttgtttcgtaattatcattttttatttttatttaaagtaactGAAGCCTTTTCAGAACCCcggcagttttttttcttccaaaccTGCCTGAAGTGCCACTGTAAATGCATCTTGGGTTCTGCAGGGTCAATACACATTCAGGAGTCTTTTTCTCATCCTTAATGTCTCGAACAAGCGAAACATACATCTTCATAGACTTTCTGGTAACCCATGTTTTCTCGTCAACTACAACTAGCGGACAGTcgtttttctttcaaagacaATCAACGTTCGCCCACACAAGTTTTAAGAGTACTATTCTCTGTGTGAGAGCTTGCCACATTAAAGTATGTGAGGACATACtctattgtgttgtgtttgtcagTATCTTGTATGTTaacataattgtaattgttaaaaATGCTTCAGGGCTACAGGCTTTGCTTTGAAGCACACTACTTGCTATTATGAATGAagtaaacacttttttttatatatcagaaaagcactgtaaataaaatgtcatgagCAACAACAACGGTCTGGAGTTAATTTAATCACACAAGTGTCTACGACGGAAGCATTGGTCTTCCTATATAAACTGTGTAGATGGGATGGGCAGTGTAATTATTGTCAAAACCACATTTTTGGCTTGGTTTGCTGTTTTGTCACTCACAGGGATTGACATCAAGAGTACAGCTGTCAGCAAGAGCTTCACAAACATTAACCCCCCTGGTAaaatcagatgtttttattccagtacagtaaattaaagtattaaaacatgGATCATTGCACAATCTCCTTGCTTGAACCTTATTGGAAGTATTATTGTGATTTCCATTGATAAGTCTTGTACAATACTG

Function

symbol description
bri3 Predicted to be located in lysosomal membrane and perinuclear region of cytoplasm. Predicted to be integral component of membrane. Orthologous to human BRI3 (brain protein I3).

NR:

description
PREDICTED: brain protein I3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018423 True 2713 mRNA 0.44 4 10333521 10342424

Neighbor

gene id symbol gene type direction distance location
AMCG00018425 NA coding upstream 33967 10299003 ~ 10299554 (+)
AMCG00018411 NA coding upstream 159225 10160464 ~ 10174296 (+)
AMCG00018414 pms2 coding upstream 173878 10150965 ~ 10159643 (+)
AMCG00018413 NA coding upstream 182748 10137980 ~ 10150773 (+)
AMCG00018412 LOC108437157,LOC107710695,LOC102303741,LOC101486233 coding upstream 213467 10100924 ~ 10120054 (+)
AMCG00018426 NA coding downstream 89766 10432190 ~ 10440657 (+)
AMCG00018429 trrap,LOC107699870 coding downstream 154449 10496873 ~ 10562962 (+)
AMCG00018432 trrap coding downstream 232472 10574896 ~ 10609128 (+)
AMCG00018434 NA coding downstream 582612 10925036 ~ 10934367 (+)
AMCG00018435 LOC107699871,LOC105888715,LOC106589575,LOC106609787,LOC108274201,LOC107669229 coding downstream 616141 10958565 ~ 10975479 (+)
G116264 NA non-coding upstream 116732 10215387 ~ 10216789 (+)
G116214 NA non-coding upstream 211963 10120177 ~ 10121558 (+)
G116199 NA non-coding upstream 291688 10032553 ~ 10041833 (+)
G116088 NA non-coding upstream 586134 9689765 ~ 9747387 (+)
G116035 dnah3,LOC107561106 non-coding upstream 714616 9618670 ~ 9618905 (+)
G116300 NA non-coding downstream 2311 10344735 ~ 10345082 (+)
G116301 NA non-coding downstream 8540 10350964 ~ 10351562 (+)
G116302 NA non-coding downstream 13548 10355972 ~ 10357357 (+)
G116303 NA non-coding downstream 17258 10359682 ~ 10359903 (+)
G116354 NA non-coding downstream 395862 10738286 ~ 10739175 (+)
AMCG00018422 NA other upstream 41260 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 286998 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 320848 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 720603 9606661 ~ 9612918 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 768957 9562061 ~ 9564564 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 909935 11252359 ~ 11256165 (+)
G116585 rbbp6,LOC107689611 other downstream 1623823 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 2147043 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 2160599 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 2201121 12543545 ~ 12611879 (+)

Expression


Co-expression Network