AMCG00018432 (trrap)


Basic Information

Item Value
gene id AMCG00018432
gene name trrap
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10574896 ~ 10609128 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018432
GTCCTCTGGCTGCTCAGTTTTGATGACAAGAACACCCTGGCTGACGCAGTGGATAAATACTGCATCGGTGTACCTCCCATACAGTGGTTGGCCTGGATTCCTCAGCTCCTCACCTGCCTAGTAGGCTCAGAGGGCAAGCCCCTTCTCAACCTCATCAGCCAGGTGGGGCGAGTGTATCCGCAGGCCGTGTACTTCCCCATCCGCACGCTGTACCTGACACTAAAGATCGAGCAGCGGGAACGCTATAAAAGCGGTGAGTCTGCCAGTCCGTCTGTGGCGTGCTCCGCAGGGCTAGGCCTGGCACGTTGGAGGGAGCTCCACCCCACCCTGCTGTCCTCACTGGAGGGCATCGTGGATCAGATGGTGTGGTTCAGGGAGAACTGGCATGAGGAGGTCCTGCGCCAGCTCCAGCAAGGCTTGGCCAAGTGTTACTCTGTGGCGTTTGAGAAGAGCGGCGCCGTCTCGGACGCCAAGATCACTCCCCACACGCTCAACTTTGTGAAGAAGCTGGTGAGCACCTTCGGCGTTGGCCTGGAGAACGTCTCCAATGTCTCCACCATGTTCTCAAGCGCTGCCTCGGAGTCCCTGGCACGCCGGGCGCAGGCAACAGCCCAGGACCCCGTCTTTCAGAAGATGAAAGGCCAGTTCACCACAGACTTTGACTTCAGCGTCCCGGGCTCCATGAAACTACACAACCTGATCTCCAAGCTGAAGAAGTGGATCAAGATCCTGGAGGCCAAGACCAAGCAGCTGCCCAAGTTCTTTCTGATTGAGGAGAAGTGTCGCTTCCTCAGCAACTTCTCAGCGCAGACGGCGGAGGTGGAGATCCCCGGGGAGTTCCTGATGCCCAAGCCCACGCACTACTACATCAAGATTGCCAGATTCATGCCCCGAGTAGAGATTGTTCAGAAACACAACACGGCTGCCCGTCGCCTCTACATCCGCGGCCACAATGGCAAGATCTACCCCTACCTGGTGATGAACGACGCCTGCCTGACCGAGTCTCGGCGCGAGGAGCGGGTCCTGCAGCTCCTCCGGCTTCTCAACCCCTGCCtggagaagaggaaggagaCCACCAAGAGACACCTCTTCTTCACAGTGCCCCGTGTGGTAGCGGTCTCCCCTCAGATGCGTCTCGTGGAGGACAACCCCTCATCGCTCTCCCTGGTCGAAATCTACAAGCAGCGCTGCGCCAAGAAAGGCATCGAGCATGACAACCCCATCTCCCGCTACTATGACCGGCTGGCGACTGTCCAGGCCAGGGGCACCCAGGCCAGCCACCAGGTTCTGCGGGACATCCTGAAGGAGGTCCAGGGGAACATGGTTCCTCGCAGCATGCTGAAGGAATGGGCCCTGCACACCTTCCCCAACGCCACCGACTACTGGACCTTCCGCAAGATGTTCACTATCCAGCTGGCCCTGATCGGCCTGGCAGAGTTTGTGCTCCACTTGAACCGTCTCAACCCGGAGATGCTGCAGATTGCTCAGGACACTGGAAAGCTCAATGTGGCATATTTCCGTTTTGACATCAATGATGCCACGGGCGACCTGGACGCCAACCGCCCTGTCCCCTTCCGTCTGACACCCAACATTTCCGAGTTCCTGACGACCATCGGCGTGTCAGGGCCCCTGACTGCGTCCATGATTGCCGTCGCCCGCTGTTTCGCCCAGCCCAACTTCAAGGTTGATGGGATTCTGAAGGCCGTTCTACGGGATGAAATAATCGCCTGGCACAAGAAGACGCAGGAAGACACCTCCATGCCGCTGTCGCCTGCGGGCCAGCCCGAGAACATGGACAGCCAGCAACTGGTATCACTGGTCCAGAAAGCCGTCACGGCCATCATGACCCGGCTGCACAGCCTGGCGCAGTTCGAGGGAGGGGAGAGCAAAGTCAACACCCTGGTCGCTGCCGCCAACAGCCTGGACAACCTCTGCCGAATGGATCCGGCCTGGCACCCATGGCTATAG

Function

symbol description
trrap Predicted to enable transcription coregulator activity. Involved in neuromast hair cell development and startle response. Predicted to be part of NuA4 histone acetyltransferase complex and SAGA complex. Predicted to be active in nucleus. Used to study autosomal dominant nonsyndromic deafness. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 75. Orthologous to human TRRAP (transformation/transcription domain associated protein).

NR:

description
PREDICTED: transformation/transcription domain-associated protein

GO: NA

KEGG:

id description
K08874 TRRAP; transformation/transcription domain-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018432 True 1968 mRNA 0.59 10 10574896 10609128

Neighbor

gene id symbol gene type direction distance location
AMCG00018429 trrap,LOC107699870 coding upstream 11934 10496873 ~ 10562962 (+)
AMCG00018426 NA coding upstream 134239 10432190 ~ 10440657 (+)
AMCG00018423 bri3 coding upstream 232472 10333521 ~ 10342424 (+)
AMCG00018425 NA coding upstream 275342 10299003 ~ 10299554 (+)
AMCG00018411 NA coding upstream 400600 10160464 ~ 10174296 (+)
AMCG00018434 NA coding downstream 315908 10925036 ~ 10934367 (+)
AMCG00018435 LOC107699871,LOC105888715,LOC106589575,LOC106609787,LOC108274201,LOC107669229 coding downstream 349437 10958565 ~ 10975479 (+)
AMCG00018436 NA coding downstream 383029 10992157 ~ 10996021 (+)
AMCG00018433 NA coding downstream 438854 11047982 ~ 11053345 (+)
AMCG00018445 NA coding downstream 522417 11131545 ~ 11139307 (+)
G116303 NA non-coding upstream 214993 10359682 ~ 10359903 (+)
G116302 NA non-coding upstream 217539 10355972 ~ 10357357 (+)
G116301 NA non-coding upstream 223334 10350964 ~ 10351562 (+)
G116300 NA non-coding upstream 229814 10344735 ~ 10345082 (+)
G116264 NA non-coding upstream 358107 10215387 ~ 10216789 (+)
G116354 NA non-coding downstream 129158 10738286 ~ 10739175 (+)
G116358 NA non-coding downstream 367894 10977022 ~ 10979685 (+)
G116374 NA non-coding downstream 452441 11061569 ~ 11083789 (+)
G116477 NA non-coding downstream 801677 11410805 ~ 11412070 (+)
G116479 NA non-coding downstream 806353 11415481 ~ 11415738 (+)
AMCG00018422 NA other upstream 282635 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 528373 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 562223 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 961978 9606661 ~ 9612918 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 1010332 9562061 ~ 9564564 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 643231 11252359 ~ 11256165 (+)
G116585 rbbp6,LOC107689611 other downstream 1357119 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 1880339 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 1893895 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 1934417 12543545 ~ 12611879 (+)

Expression


Co-expression Network