AMCG00018440


Basic Information

Item Value
gene id AMCG00018440
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11088174 ~ 11146940 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018440
ATGCGTCCGTCCCCCCCTTGGCAGTTACTGTGCCGGCTTGGACTGGTTGcgtttgatttttattattttttgttttgtgtgtgtgtgtgtgcttctaATATAGCAGGTGCAGAGGTGTTCGGTGTAAATGATCTGAAAACAACCCaagccaacaacaacaaaaaacaaattggaaatGGATTACAA
>TU145779
AGACTGGTTAGGGAGCATGCTTAGATGGTGTCGCGTAATGAGGGAAAATCAAATCGCTCTGATGGAGAGTTGTACACTTGAGTACGTGCTGGTCAGAGGCAGGCTGACCTGTACTAAATGAGGCGAACAGTCCTTTATCTGTTATTAGGACTTTGGCTGTTTGGCTGAAAACAGCAATTGTGCCACTCATAGTATGAAATCTAAGCTTTGTagcatttgtaattatttaaaatatataacataggATGTGGGGTCCCCTTCATTCTTTCCCAACCGACTCCAAACTTTGTGAGACATGAACTTTTCTTGTACAGTGTATTGTAAATGAGTTCTTTGCCGAGGTAAAGATGTAACACTATCAACAAGTACCTTATTTTAACTGTTATTTACAGAGTTCTgtagaaaacaatgaaacaaacaaccaaacaaaacagttcTGGTTGCTTGCAGCTGAGACCTTTCATGTGTATATCTATAATCACTGTAGAACATTAGaagatatttacttttaataagattaatttattgtttgtaCTATGCTTCTTTTTCGAGCATCACCATGTAAGAGTATGTTATAGCAGGCTAaagaaaaattgtaaaaatgagagagagagtgacaggtCATTTTATCcatgttaaatgtgtattattaagtatgttttgtttgtgtgaactAGCCATGTCAGTCTAATTTTTGACATCCTTTATGGGatctacttttttttgttttccatgttttttttgttgttgttttttttacatgtaaataaatgctTGTCTAAACACTGAGTAATGCCGATAACCATGCAAAGGAGTGAGGATGTAGAGTGAGCATACAGTATGGAGGTGTGTACAAACCATGGCCTGTATGGTTTGGCTGAATTACAGTGGGGTTTGCTTATAGGGATGAAGTGCATTCTGTTGTTGAGTCTTGCGATCCACAGAGAGGCTGATAAGAAGACTATAGACATCTGAGCCTCAGTGTTCTGCAACAGATCACTTCCCACATGGTGAAGTTACACAGACACGCACGATTCTCCTGGAGCTCAATACATTCTGGGTGATGTGGAGTGGGacacaaaaaccaaaacaaaccgCAAACTGTCACTGGCATTCCCCTTCTGCAGACCTCTGTGGATTAAGAACACACGTCcctcttttttttaactctgtGTCTTTTTGCTTTCCAGTTGcgtttgatttttattattttttgttttgtgtgtgtgtgtgtgcttctaATATAGCAGGTGCAGAGGTGTTCGGTGTAAATGATCTGAAAACAACCCaagccaacaacaacaaaaaacaaattggaaatGGATTACAATGTGGATAGTTTGTAGAAGCTCAAATAATATGTCTGACTGAGGGGATATGAGATGTGAGATGATCAGGTGGTTGGCAGAAGCTATCCTGAGATCCTTTCTCCTAGGTACTCGTGATGAACCACTGCCGACAAGAGAGtgagtgtatttgtgtgtgtgggtacgTGTGCACATGCACAATGGCTTGTCCTTTCTGCTGCTAAACTCTGTGCTGTTTGACTCTTGCATGTGTTAATCTCCAATAAAAACACTACCAGTGTGACCTGTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018440 False 186 mRNA 0.42 2 11088441 11090570
TU145779 True 1597 lncRNA 0.39 2 11088174 11146940

Neighbor

gene id symbol gene type direction distance location
AMCG00018430 NA coding downstream 595211 10485173 ~ 10492963 (-)
AMCG00018428 baiap2l1,LOC106601829,LOC108412765,LOC106601826 coding downstream 703317 10377293 ~ 10384857 (-)
AMCG00018427 NA coding downstream 721919 10342142 ~ 10366255 (-)
AMCG00018420 NA coding downstream 856973 10223672 ~ 10231201 (-)
AMCG00018419 LOC108273406,LOC108431966,LOC107724689 coding downstream 869686 10202779 ~ 10218488 (-)
AMCG00018447 LOC100195964 coding upstream 26915 11173855 ~ 11196168 (-)
AMCG00018448 NA coding upstream 59802 11206742 ~ 11209424 (-)
AMCG00018446 NA coding upstream 74889 11221829 ~ 11236984 (-)
AMCG00018455 fahd1 coding upstream 223593 11370533 ~ 11371192 (-)
AMCG00018460 NA coding upstream 240048 11386988 ~ 11393467 (-)
G116368 NA non-coding downstream 108496 10977222 ~ 10979678 (-)
G116367 NA non-coding downstream 114867 10973095 ~ 10973307 (-)
G116365 NA non-coding downstream 117087 10970880 ~ 10971087 (-)
G116355 NA non-coding downstream 349166 10738551 ~ 10739008 (-)
G116352 NA non-coding downstream 417155 10609018 ~ 10671019 (-)
G116446 NA non-coding upstream 105419 11252359 ~ 11253565 (-)
G116454 NA non-coding upstream 133426 11280366 ~ 11353097 (-)
G116501 NA non-coding upstream 364523 11511463 ~ 11514493 (-)
G116511 NA non-coding upstream 384858 11531798 ~ 11532070 (-)
G116529 NA non-coding upstream 461197 11608137 ~ 11609570 (-)
AMCG00018437 srebf1,LOC107713935 other downstream 4394 11061628 ~ 11083780 (-)
AMCG00018431 trrap other downstream 508069 10562554 ~ 10580105 (-)
G116307 LOC108412765,LOC107713954,LOC107665916,LOC107691223,LOC107548703 other downstream 702958 10360129 ~ 10385216 (-)
G116306 NA other downstream 746085 10335201 ~ 10342089 (-)
AMCG00018424 tecpr1,LOC102784946,LOC103372311 other downstream 755192 10303054 ~ 10332982 (-)
G116428 NA other upstream 52638 11199578 ~ 11202888 (-)
G116577 NA other upstream 764074 11911014 ~ 11911336 (-)
AMCG00018490 NA other upstream 1140628 12287568 ~ 12290544 (-)
AMCG00018522 NA other upstream 2106145 13253085 ~ 13257250 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other upstream 2498428 13645368 ~ 13727870 (-)

Expression


Co-expression Network