AMCG00018441


Basic Information

Item Value
gene id AMCG00018441
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11197116 ~ 11199442 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018441
ATGAGCGGGGGATACGATGTCGAGCTGTTTGCAGAAGCTCCGGACTACGACTTGATCTGCACGATCTGCCGCGGGGTGTTGCGATGCCCCGTCAGGGTGGCCTGCAACCACGTGTTCTGCAAGAGGTGCATCTTACAGTGGCTGAAGAGACAGGAGACCTGTCCTTGCTGCAGGAAACCAGTGAACCAGAGCTTGATGTTTGTGATGTATAAACTCAGCAAGGCCATCAGCCGCTTACAGATCAAGTGTAAAAATGAGATCCACGGGTGTACGGCCACTTTCCCCCTGTCGGAGCAGTACTGCCACAGCACAGGCTGCCTGTTTGAGCGGACAGCCTGCCCCCATGAGGGCTGCAGTGCCATAGTCCTGCGCAGGGAGCTGGAGGGCCACATGGGGCGCTGCGAGCATTGGAGACAGCCCTGCCAGATGGGCTGTGGAACTGTGCTTTCCCACCAGACCCAGGCCCAGCACAACTGCTACCGGCAGCTGCGGCGCGAATACGAGGCCCAGCAGCAGACCCACCGTGCCATCGCCACCACCCTgcagaagaagatgaagaagatgcagagcaccatggtgcagATGAAAAGGCAGCTGGGCCTGATCTGCGAGAGCCTGGAGGTCATGGACAAccaagaggagggagagggggaggatgCAGGCGAaggcaacagcagcagcagctccagctcctAA

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24148 RNF151; RING finger protein 151

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018441 True 696 mRNA 0.59 4 11197116 11199442

Neighbor

gene id symbol gene type direction distance location
AMCG00018443 NA coding upstream 26262 11165943 ~ 11170854 (+)
AMCG00018444 gid4,LOC107724729,LOC106601817,LOC107555661 coding upstream 45927 11143263 ~ 11151189 (+)
AMCG00018445 NA coding upstream 57809 11131545 ~ 11139307 (+)
AMCG00018433 NA coding upstream 143771 11047982 ~ 11053345 (+)
AMCG00018436 NA coding upstream 201095 10992157 ~ 10996021 (+)
AMCG00018442 rps2,rs2 coding downstream 3746 11203188 ~ 11209510 (+)
AMCG00018453 NA coding downstream 96907 11296349 ~ 11296846 (+)
AMCG00018454 LOC107694825,LOC107757004,LOC101474240,LOC102192248 coding downstream 118729 11318171 ~ 11326768 (+)
AMCG00018452 NA coding downstream 157517 11356959 ~ 11370202 (+)
AMCG00018450 LOC106606699 coding downstream 172102 11371544 ~ 11377395 (+)
G116374 NA non-coding upstream 113327 11061569 ~ 11083789 (+)
G116358 NA non-coding upstream 217431 10977022 ~ 10979685 (+)
G116354 NA non-coding upstream 457941 10738286 ~ 10739175 (+)
G116303 NA non-coding upstream 837213 10359682 ~ 10359903 (+)
G116302 NA non-coding upstream 839759 10355972 ~ 10357357 (+)
G116477 NA non-coding downstream 211363 11410805 ~ 11412070 (+)
G116479 NA non-coding downstream 216039 11415481 ~ 11415738 (+)
G116546 NA non-coding downstream 529367 11728809 ~ 11818089 (+)
G116601 NA non-coding downstream 927008 12126450 ~ 12126699 (+)
G116603 NA non-coding downstream 939560 12139002 ~ 12142135 (+)
AMCG00018422 NA other upstream 904855 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 1150593 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 1184443 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 1584198 9606661 ~ 9612918 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 1632552 9562061 ~ 9564564 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 52917 11252359 ~ 11256165 (+)
G116585 rbbp6,LOC107689611 other downstream 766805 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 1290025 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 1303581 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 1344103 12543545 ~ 12611879 (+)

Expression


Co-expression Network