AMCG00018442 (rps2,rs2)


Basic Information

Item Value
gene id AMCG00018442
gene name rps2,rs2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11203188 ~ 11209510 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018442
TAGACATCACGTAAGTAGAGTGCGAGCAGGAGGCATAATGTGTGGGGAGAAGAGAAAATCCATCAGATATCGTGACCATCCTTTTACATGATGGATGACTACTTAAAAATCTTCCAACTAAGTGGATTAATACGTGTCCCCCATTCTGTATTTTAGGTTTTACGCGTATACATTCAGATGTTCCTTTCCTGTGTAGTTTGTCATAAATATGGAGAACACAGCCCGCGTTAATTGCTTATTTGGTTAACGCATTAGTCTAAAGAGTAATGCCGAAAGAAATCAGTGTACGGAGGCTACGTAATATAAGTagaaccaagaaaacaattcaaaGTTCTTTTTTGGAATACAGCACAAGAGCCAATGTTCTAACCTAGAATATTAGTTATTATAGTGCGCTTGATTAGTGAGCATGAGCAAGGCTGCGCTATGAATTGCACTGTAGGAAGTGAAAGTGTGTACATCTGTTAGAAACGATGTGGTGCGCTGCTTTTCGGTTTGTTGGTCAGCATTGATAATATTCCCTTGTTCATTCTTAGCAAATGGCGGACGACGCCGGTGGTAGAGGAGGTTTTCGCGGTGGGTTCGGCGGTGGTGGCCGGGGACGCGGCCGAGGTCGTGGCCGGGGACGCGGCAGGGGCCGTGGAGCCCGGGGAGGAAAGTCTGACGACAAGGAGTGGGTGCCAGTGACCAAGCTGGGTCGCCTTGTCAAGGACATGAAGATCAAATCCCTGGAGGAGATCTACCTGTACTCCCTGCCCATCAAGGAGTCTGAGATCATCGACTTCTTCCTGGGTTCCTCTCTGAAGGATGAGGTGTTGAAGATCATGCCTGTCCAGAAGCAGACCAGGGCTGGTCAGAGAACCAGGTTCAAGGCTTTTGTTGCCATTGGGGACTACAATGGCCACGTTGGTCTGGGAGTGAAGTGCTCCAAAGAGGTGGCCACTGCCATCCGTGGGGCCATCATCCTGGCCAAGCTGTCCATTGTGCCCGTCAGGAGAGGCTACTGGGGTAACAAGATCGGCAAACCCCACACAGTGCCCTGCAAGGTTACTGGTCGCTGTGGCTCAGTCCTGGTGCGTCTCATCCCAGCACCCCGTGGTACCGGCATAGTGTCTGCGCCAGTGCCCAAGAAGCTGCTCATGATGGCTGGTATCGATGACTGTTACACCTCAGCCAGGGGGTGCACAGCCACACTGGGCAACTTCGCCAAGGCCACCTTTGATGCCATCTCCAAGACTTACAGCTACTTGACCCCTGATCTCTGGAAGGAGACTGTCTTCACCAAGTCACCATATCAGGAGTTTACGGATCACTTGGCAAAGACCCATACCCGTGTGTCGGTGCAGAGGGCCCAGGCTGGCGTTCCACCAACTTCCTAAAAGTTTTGTATGAAAGATGTAATAAAACCTTGCATCAATATactgttgcattttgtttttattctgccccccccccctccatgcTGGGTAGACACTCTGTGCATTGTGGCAATACAATTTTGGCAAGACATTCTTTAATCCTGAATAAAGAAGTGTGCACTGGATGGGTGCTCTGAAGGATGTTATCAGGGGTTTGTTTCTATAGGATGACACTCCTTCCCCTTGCTTAAATAAAGCCTTTTCAACCACAGTTCTAAAAGTTGTGGGTAGTTTGTGTTCTAGGAGTTTATGGACCTGGCAATGGAAGGTATCCTAAATAAGACCTTAATCCAATACTATGTCCCTAGTCAAAAACAAATGCCTCCTCCTAGGCTCTTCCTCAAACTAGCCTCACTTCAGCTAAATTCACCTCACAGTGGAGAGTGCTCTCTTCTCCATCACTTAACTAGTTCACAGCAGAGTAATCTTGCCCTCTGACATTGTAAATTGCAATCAGAATAGTTTTCCaacaaagctttttattttacagtttcaaaCCCAAGCAAGGAGAGTACTTGTAAGAGAATATTGAGTGCTGTTGGCTTCAGGCTTCAGCAGTTTGTTTCTGACGCTCCTCAATCATCCTGTGCTTCTGCTTCATCAGGCATTTCCGGGCACTGCCATAAGCACCCAGATCCCCATATCGTGACTGGTAGGCCTGGGACACCTCTGTGAACTGTTGCATTTCCTTGGcgcagttctgctgatagctgTTCCCCTCGCGCTGCTGACAGGCCCTCAGCCGCTCCTGCACCACCTTCACAATCTCCTGATCCACTTTACTgcagggggaaaacaaaaagtcagTACAGACTGGCTTCAGATCTAACCTGTGCTGAATGTGTACCTGTGTCAGGAGGCAAGATCAAGTTGTTTCTCTCTTGctttcataaaaaacaaatgccttCAGAGATTTTGATTCTCTTCACCTGTGATCTGTTCTGTTGATGTCCAGGGAGTTTTAACAGATGAAATATGTTAATGATAGCAcactatatactgtacacataGTAGATTTccagaaagatatcgctgctctagaggcagttccgAGGAGAGCAACCTGACTTactccaggtctgaagggaatgtcctactgagagactgagggaactgaaccttttcaccctggaacagaggagactaagttaggacttgattcaagtcttcaaagtaaatgaaaggcatcgaccacatcaaaccagaggggcttttccagatctgcagggacgcagggacacaaaaggaaattgggcttcaaggcattcaagacagaaaacaggagacacatcCTCACACAAAGAGTCATcagaatctggaacaaactccccagaattgtggttgaagctgacaatttgggaacattcaaaaatagactggataggatccttggatcactgagatactaatggataccaaacaagcatgatggggcgaatggcctcctctcatttgtaaactttaggTTTCTTATAGCTATGTccatctatacacacacatttcactgtGACATGTCCAGTATCTAaattttgctttaaatatatatatgttatgaatgtaaaatgtttctaaCAATCTCCAAATTCCATCCCTTTACTTCTTAGCATGCTAAATCTCAACCAGTCAGTAGAGAtgtacagagagacagagcccTGGGGAACAGAGCTCAACTCAGGCAGTCTCGGTCTAATTTTAGCAGGGGCTGTGGATTTACGTATTTTCCAGATAGAAAAAGGTGGcttcattattaatttcatgttCCAAATCATTATTAGGTATATAGTCAGTATGGTCCTTCCAACCAAGAGTTCAGAATGTACTGGAAATAAACTCCCACCCTCTGCAGGTCACAAGTTCCCCAACTTAAATGTTAAATCCCTATAGAGATCCTCTCCGATAAACCGCCatctacaaaaaaacaaaaacaaaaaaaactctctcTATACAACAATGGTAATTCTAAAATTACTAACAACATCTATGAGTGTAACTGCTTCCGAAGCGTGCCATGAATACGTACTGGTCTCTCCTCCACTGCATCTCGGCCTCGTAGTAGCACAGGTAGTCCCCCAGCTGGCACTCGGTCATGTCCGGCACCCTGCGGAACTGCTGGTGGTAATAGTAGAACTTGTTCCTCTCATGCAGCCTGTCCACCCACCCTCTGAATGTGCTGACGGGCAAATCCACCGAGTAGTGGAACAGTTTGGTTACAATGAGCGCCGGGTTGGGAAAGGCCGTCTCTTTCTCCACGGCCGGGGTGCGCCGGGGTGGCTGTGGATAGACATCTTTATCCCAGTCGTCCGGCATCTCTCCCTTGCTGTTTCTGCACTTAAATCCCAAATACACCTTCGATTCGACCTCAACCCTCTCCCGTCACAACAGAGGCTGCGCGG

Function

symbol description
rps2 Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Is expressed in epidermis; mesenchyme; nervous system; pectoral fin; and pharyngeal arch 3-7 skeleton. Orthologous to human RPS2 (ribosomal protein S2).

NR:

description
PREDICTED: 40S ribosomal protein S2 isoform X1

GO:

id name namespace
GO:0006412 translation biological_process
GO:0015935 small ribosomal subunit cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02981 RP-S2e, RPS2; small subunit ribosomal protein S2e

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018442 True 3811 mRNA 0.47 9 11203188 11209510

Neighbor

gene id symbol gene type direction distance location
AMCG00018441 NA coding upstream 3746 11197116 ~ 11199442 (+)
AMCG00018443 NA coding upstream 32334 11165943 ~ 11170854 (+)
AMCG00018444 gid4,LOC107724729,LOC106601817,LOC107555661 coding upstream 51999 11143263 ~ 11151189 (+)
AMCG00018445 NA coding upstream 63881 11131545 ~ 11139307 (+)
AMCG00018433 NA coding upstream 149843 11047982 ~ 11053345 (+)
AMCG00018453 NA coding downstream 86839 11296349 ~ 11296846 (+)
AMCG00018454 LOC107694825,LOC107757004,LOC101474240,LOC102192248 coding downstream 108661 11318171 ~ 11326768 (+)
AMCG00018452 NA coding downstream 147449 11356959 ~ 11370202 (+)
AMCG00018450 LOC106606699 coding downstream 162034 11371544 ~ 11377395 (+)
AMCG00018451 LOC108432196,LOC105891623,LOC100699516 coding downstream 168389 11377899 ~ 11384556 (+)
G116374 NA non-coding upstream 119399 11061569 ~ 11083789 (+)
G116358 NA non-coding upstream 223503 10977022 ~ 10979685 (+)
G116354 NA non-coding upstream 464013 10738286 ~ 10739175 (+)
G116303 NA non-coding upstream 843285 10359682 ~ 10359903 (+)
G116302 NA non-coding upstream 845831 10355972 ~ 10357357 (+)
G116477 NA non-coding downstream 201295 11410805 ~ 11412070 (+)
G116479 NA non-coding downstream 205971 11415481 ~ 11415738 (+)
G116546 NA non-coding downstream 519299 11728809 ~ 11818089 (+)
G116601 NA non-coding downstream 916940 12126450 ~ 12126699 (+)
G116603 NA non-coding downstream 929492 12139002 ~ 12142135 (+)
AMCG00018422 NA other upstream 910927 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 1156665 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 1190515 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 1590270 9606661 ~ 9612918 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 1638624 9562061 ~ 9564564 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 42849 11252359 ~ 11256165 (+)
G116585 rbbp6,LOC107689611 other downstream 756737 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 1279957 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 1293513 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 1334035 12543545 ~ 12611879 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location