AMCG00018443


Basic Information

Item Value
gene id AMCG00018443
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11165943 ~ 11170854 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018443
ATGGACGCCAAACGGTACCCCGTCAACATCCGACTCATCGGAGTGATGCACAAGGAGAAACACAAGTTTTATTCTGAAGACCTTGACCTTGTGAACGTGACCAATGTGAAGCAGAAGTTTAAGAAGAATGGTCCAAGCAAGTCTGTGTTATGCCTGAAGTTCTTGGAGAGTTACTGCAGCAGCCTTCTCCAGTGTGAGGAAAAGATCTCCAGGAGCAATGAGCTCATCCACATTGTGGTCATGCCGTCGGAGGAccaggaggagagcctgggcAGTGCAGTGAACGGCAAGCGCTTCAGCGAAGGCAATGTGAGCCAGCCCTTCATCACTGAGACGTACCGCTGCGTGGCGCCCTTTGAGACCAAGGACACCAAGAACCGGCCCTTCAAGGTGGCGGTGAACGAGGTCGTGGATGTGCTCATCAAAGACCCAGCAGGCTGGTGGCTGGTGGAGAATGAAGACAAGCAGCTGGCCTGGTTCCCAGCGCCGTACTTGGAGAAGAACGAGGAGGATGTAAATGACAACCTGCCAGACGTGTCCGAAGAAGGCATGCTGTACTGCACATTAAGAAATTACGAAGCCAAAATTGCAGACGAGCTCTCAGTGAACATCGGCGCTGTGGTGGAGGTTTTACAGACTTCTGATGATGGATGGTGGTTGATCAGGTATCATGGGAAGGCAGGTTACGTACCTTCCATGTATCTGAAGCCCTACAGGAACCCGCACCTGAGGTTCCAGAATCTGCAGCAGGAAATGCGTAGCTCCAACCTCAACCTGTCCCACTTGCAGAGCACCGAGGCAAACCTACTGTCCCTTCAAAAACGCGACCTAAGCCGCTCCCAGGAGATCCTGCAGTCGCGGCGCTCCTCCCCCCCCGCAGGGGGGTTCCTACTGTTGCCCTCGGACAAGAAGAAGTCACGCTCCCTGAACCAGCTGTCAGCCCGCAGGCAGGCCTTCGCCATCCCTACCATCACCGTGGAGGGAGacgagagagaggaggagcaACCCCGAAAAGACAGCCTGAGCGAGGAGAGCGAGTTGAGCTTCAGTGACGAGTCCAGCTCCCAGGACAGCGACTTCCTCAGTGTCAGCCAACCTGACATGGCTGACCGGCTGCGCATGAGccgcacccccccacccatggTGGCTGACCGCCAAAGCCCTGACTGCATCAGCGCCACCCTCCCCAGGGAGACGCTCTCCAGTGCCAGATCCGACCCCAACCTCTTCAAGACCCCCACTATCCCCAAGGTGCCCCCCCGGCCCAAAGCCCAGGAGATCCTCACTCGCTGCACAACCATGACCAGAAAGGCAGCCCTGGCATCTAAAACACGGCTGTCCATCGAACTAGAGGAGATCCAAAGCCGCTAA

Function

GO: NA

KEGG:

id description
K17934 NOXO1, SNX28; NADPH oxidase organizer 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018443 True 1371 mRNA 0.57 7 11165943 11170854

Neighbor

gene id symbol gene type direction distance location
AMCG00018444 gid4,LOC107724729,LOC106601817,LOC107555661 coding upstream 14754 11143263 ~ 11151189 (+)
AMCG00018445 NA coding upstream 26636 11131545 ~ 11139307 (+)
AMCG00018433 NA coding upstream 112598 11047982 ~ 11053345 (+)
AMCG00018436 NA coding upstream 169922 10992157 ~ 10996021 (+)
AMCG00018435 LOC107699871,LOC105888715,LOC106589575,LOC106609787,LOC108274201,LOC107669229 coding upstream 190464 10958565 ~ 10975479 (+)
AMCG00018441 NA coding downstream 26262 11197116 ~ 11199442 (+)
AMCG00018442 rps2,rs2 coding downstream 32334 11203188 ~ 11209510 (+)
AMCG00018453 NA coding downstream 125495 11296349 ~ 11296846 (+)
AMCG00018454 LOC107694825,LOC107757004,LOC101474240,LOC102192248 coding downstream 147317 11318171 ~ 11326768 (+)
AMCG00018452 NA coding downstream 186105 11356959 ~ 11370202 (+)
G116374 NA non-coding upstream 82154 11061569 ~ 11083789 (+)
G116358 NA non-coding upstream 186258 10977022 ~ 10979685 (+)
G116354 NA non-coding upstream 426768 10738286 ~ 10739175 (+)
G116303 NA non-coding upstream 806040 10359682 ~ 10359903 (+)
G116302 NA non-coding upstream 808586 10355972 ~ 10357357 (+)
G116477 NA non-coding downstream 239951 11410805 ~ 11412070 (+)
G116479 NA non-coding downstream 244627 11415481 ~ 11415738 (+)
G116546 NA non-coding downstream 557955 11728809 ~ 11818089 (+)
G116601 NA non-coding downstream 955596 12126450 ~ 12126699 (+)
G116603 NA non-coding downstream 968148 12139002 ~ 12142135 (+)
AMCG00018422 NA other upstream 873682 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 1119420 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 1153270 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 1553025 9606661 ~ 9612918 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 1601379 9562061 ~ 9564564 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 81505 11252359 ~ 11256165 (+)
G116585 rbbp6,LOC107689611 other downstream 795393 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 1318613 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 1332169 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 1372691 12543545 ~ 12611879 (+)

Expression


Co-expression Network