AMCG00018444 (gid4,LOC107724729,LOC106601817,LOC107555661)


Basic Information

Item Value
gene id AMCG00018444
gene name gid4,LOC107724729,LOC106601817,LOC107555661
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11143263 ~ 11151189 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018444
GGACCGGGGGCTTCAGGGGGGAACTACAGATGGCAACTGAAAGACATACAAGTCCCAGCAGGCGTTTCGACAGGTAAGCCAATCACCGCTGCGTTTTATAGTAAGGTGTATTCCCTCAACGAATCAGAGGAGGCGATGCAGCTGCGTGGCGCTGCGTCGAGGTCCCCACGGTTTTCTGGGACCCTGGAAACGCATCTCTCGGCGGCCCGGGGAGGATTCTTGAGCCGGTGAGCGGCCTCGACAGTTCTCCCCTTTTCCCCTTCCTGTCTGCGTTTCTCCGGCTCCCGTCGACCGCGGTGAGGGCGACCCCCTGAAGTGATCAACATGCCGGTCCGCACTGAGTGCTGCAGTAACGCCTCTGCGGCCTTCATATCCTCGGCCTCGCTTATGCCACCTCCCCCGATCAACACGCAGCAGCCTGGCGTCGCCACCTCGCTCCTGTACAGCGGCTCCAAGTTTCGGGGACATCAGAAGAGTAAAGGAAACTCCTACGACGTGGAGGTTGTTTTGCAGCACGTCACAACGGAAGACTCTTATTTGTGTGGGTACCTCAAGATCAAAGGACTTACAGAGgAGTACCCAACACTTACTACATTCTTTGCCGGGGAAATCATCAGTAAAAAGCGGCCCTTTTTAACACGGAAATGGGATGCGGACGAAGATGTAGATCGCAAACACTGGgGCAAATTCCAGGCTTTTTACCAGTATGCGAAGACATTTAACTCAGATGACTTTGACTATGAAGAACTTAAAAACAGCGATTATGTCTTCATGAGATGGAAGGAACAGTTTTTAGTCCCGGACCACACAATCAAGGACATAAGCGGGGCTTCCTTCGCGGGCTTCTACTACATCTGCTTCCAGAAATCCACAGCCACCATTGAGGGCTATTACTACCACAGAAGTTCAGAATGGTATCAGTCGCTGAACCTCACGCACGTCGCTGAACACAGCGCTCCCATTTATGAGTTTCGGTGACAACTGTGCATGGGCAGCACGGGCAGAGAAGAACTTTTTGGCACTGTCCTGCAAGGAACACGACGAGGGAACGGGGAGATTAACCGCGAGGTCGTGTGGGATATGCCGGTCTTCTCAGCTGAGAGACACGGAGGAAAAGACAGTCAGACGAACAGATCGGCCCGCCAGGGAGGGAGTTAGCAAATCACGTGGGGGTCCGCAGTCTGGAGTATGCTATCTGGGATTTgcgccattttttttttctctttctaattTTAATCTCTGGTTTTTAAAGCTACTTTTGTTTACCTGCACTCTTGTCAAAGTCTCTATAGTCTCCTCTAAAGGAATCACCTGTAAAATGgactttcacttttttttttaaaattagaaatattATTACTGTGCTTCAGTCGGGGGAGTTCAAACTtaatttttaacaaatatagTTTTGGTTGGTTTCGGAGGAGTGATACCAATGTAAGCTTGATGGGGGCAGCACGTGGAGAAAACGTTGTTAAGCTGCAGAGCAGTTTAACCGATAGGGGCCTTAAGAACTACTTAATTGCTATTGAGAACAATATGTCGAGAGAGCTTGTTTCGCTGGGACTTCGCAATTTGTCTGCTGGGTACAGGCTCGGGTACAGCTACAGGAAATTGATTGTCTGCTGGGTACACGCTGGCATCTGACCCTCGATTCATGAGCCCGGAGTCCGGAGGGTTAATGCTTGAACACTGAGCGGCTTCAACACCCATCCCGAGCTGTCGGTGTGAGTGGCGACAGGTTGATCTTCAGAGAcagtgtatgttgtgtgtttataCCAGGTCTCACGTTCAAGGTAAGAGATGGCGCAGAGGTGTAGTAAAGGCTGGCTATGGAAAAATTCACCCGTTACCAGTCCATATGGGCATTCATTTTATGGCCATTGTACCCCTCTTGAGGAATGCTTTTACGTTTCCTCTCTGCATAAAACAAATTGGTATTCGATTCACACACCAATGATCTCATCTCATCATTTTCGTCTATGCAACATGCAGCAATCCATGCAGTAAACAGTCAGAATCAATTTCCTTAACATGATTCagaattgattgtttttttctttcagttgtttttattttttatttcataaagaCTTTTTAGAAATTAGTATTATGAGGAGAGACTAATTCTAGCcataaaagtatttatttaaaagaaatatataaataaatatattataaatctatataagatgatttttttgttgaagtgcttccCATCCTTCTGCTGGCCATTGCAAGTTAACCTTTTCCTGGCTGAGGAGCCCTGCTGTTCATCATCACCTCGGAGTGCTTCCAGCAAAGGGCTCTGTTCTTTAAAGGTGGATTTCTATAGTATTCCTTCCTCCGTTTCAGAGTAAACTCCAGTAACTCTGTCCTGGCGCACTGTGCTGCAAGTGCACAGAGCTGGGCACTGCCCCTCACACCTCTTCAGTAAGGGCAGGGAGGGACTGCCAGTGAGAATTGGGCTGTGTCCTCTTAATGGAAATCATAGTGAGAGAAACTTTACTAACACTATGAACAGCCAGTGATCCCAAGTCTTTATTTCTTCTATTCATTTAAACCCAAGCCAGGCTATGTCTACTTCATCACTGGAAAACAGATTCCTGGTATTTACTGATCCTGGGAACGTACATTGTATTGTCAAATTCAGTTTGGGCAATACACCCGTCCTAAACAAACCGCTTTCCCTGTATGCTAAAGAAAACGTTTGCATTTACACCATGTCCCTCCCCCCTCACCTGTCCCCTTTGGCAAGGTGTACTTTTTAAGGGTCCAGTTATGAGGAGACTTTGGACAGGAGGTGTCTGGCCTGTGGCAGAGTGCAAAATGGGactgcaaaaacagaaaagcacttGGCAATGGCTTTAAGGAACATTTTTAATGcagatttacttttaaattgaactcactcacttttttttttaattgcaatgaTCAAAAACAACTTTGTAAGGGATATCAAGATCCCACTCAGTGCAGacttattttaacaaaacataccAAGCATTCCTTAAAGCTACACAGAGCCTACTgccttaaatacatttatataaagaaatattcTACTACATAGATTACCATTTAAAGTCTTGCTCTATTCATGCTACTACCACCTGGGTagcaaaataaagttttctgtATTATGTCAGGATAGgaatattttctgttctttattttctcccccTGCTCCTCTACATCGTCTGCAGTGGCAGCTCCATTGCGTTCAGACCCATTAGGTTTCACTTCTGCAGTTTGTCCGGAAGTAAAACGCTCAATGTACCTACCTCAAGggtcaattaattaaatcagtgcCACTTTATATCGACTGCTAACAGGTGATTGTGGAGACCGACAGGGAACAGGGGTCAAAGGAGCCAAAAATACAAAGTTTCAGCTTTTTTcagtacaaaaacagaagatgtGTAGCAGACCAGTGCTCATCTCTGGCCTGCTGCTGGCATTTTCATTGGACTCAAACCTATCTGTGGGCACAATTCAGAGAGGAGTCACTGGAGTTGTCCAGGCAACACTAAGGCCAGggtaaaatcaaaactttgcccCCTCTATCAATGCAGAACGGCAAACCAGAACGCAGTggcggcttcatttttaataaaatgtaactttctTTTACTTCTAAAGCTAACCACTATGATATACGGGCCTGTattttgctattagcaggtgggtcacagttttgatttaatccagctaAGTTGGTTTGATTAGTAGTGTTCAATGATACATGCTGTTCTGCAACCCTTACAAAGATGAAACcatgaatgaatacaaaaccacgaaataaattatgtacagaaacaaaattatgATCTTCAATCTTCACTGCATAAATACCCTGTAAAAAAAGACTTTTGTAAATATGGAACTACATTTGTCATAtaggaattattttattctctggaagtgttttttttttttttttttacttcacgCTACATTTTGAGGGTGGGGTTTCGGTGAATACAAGTTACAAGATAGAATGCAAAGAAGCACATGGTTACATGAGGTTGCCAGAAATCAGTGTAAAATGACATGTACAGAGGCTAGACGAAGTGTTGTGAAGATGTGACAAAGTGTGGGGCATTTACTGAATGAGTGCATGGagagaaatattttattaaggttttcgttaaaaaaataaaagtacatgaATTTTGAAAGGAAGGAAGTGCAGTTccatcagcaaaaaaaaaaaaaaaatccttaaaatacatttttgatttgtgttCCTTCCTCTGAGATgatgtgtgaaatgtttaagaagctgaatgtttataaaatataaaataaatttttATTAAGCAAGTTTTTACTGTTGAAAGATATTTGGGCTGTATTTTTACCCTGTATATAGgacaattgtttttgtatttattttaaacattgttctGATAAGTCACCACCAGGTGCCAGTAGAGTGTAAAGTATCCCTCTGGCTCAGACTGCTTTTATACTGCCCTGTTCAATAAAGGAAAGATGCCAGGACTTTCAAAGGGGTTTTTCCTTATGGCATTTTCAAAGCATAGTTG

Function

symbol description
gid4 Orthologous to human GID4 (GID complex subunit 4 homolog).

NR:

description
PREDICTED: glucose-induced degradation protein 4 homolog

GO: NA

KEGG:

id description
K23335 GID4; glucose-induced degradation protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018444 True 4553 mRNA 0.43 6 11143263 11151189

Neighbor

gene id symbol gene type direction distance location
AMCG00018445 NA coding upstream 3956 11131545 ~ 11139307 (+)
AMCG00018433 NA coding upstream 89918 11047982 ~ 11053345 (+)
AMCG00018436 NA coding upstream 147242 10992157 ~ 10996021 (+)
AMCG00018435 LOC107699871,LOC105888715,LOC106589575,LOC106609787,LOC108274201,LOC107669229 coding upstream 167784 10958565 ~ 10975479 (+)
AMCG00018434 NA coding upstream 208896 10925036 ~ 10934367 (+)
AMCG00018443 NA coding downstream 14754 11165943 ~ 11170854 (+)
AMCG00018441 NA coding downstream 45927 11197116 ~ 11199442 (+)
AMCG00018442 rps2,rs2 coding downstream 51999 11203188 ~ 11209510 (+)
AMCG00018453 NA coding downstream 145160 11296349 ~ 11296846 (+)
AMCG00018454 LOC107694825,LOC107757004,LOC101474240,LOC102192248 coding downstream 166982 11318171 ~ 11326768 (+)
G116374 NA non-coding upstream 59474 11061569 ~ 11083789 (+)
G116358 NA non-coding upstream 163578 10977022 ~ 10979685 (+)
G116354 NA non-coding upstream 404088 10738286 ~ 10739175 (+)
G116303 NA non-coding upstream 783360 10359682 ~ 10359903 (+)
G116302 NA non-coding upstream 785906 10355972 ~ 10357357 (+)
G116477 NA non-coding downstream 259616 11410805 ~ 11412070 (+)
G116479 NA non-coding downstream 264292 11415481 ~ 11415738 (+)
G116546 NA non-coding downstream 577620 11728809 ~ 11818089 (+)
G116601 NA non-coding downstream 975261 12126450 ~ 12126699 (+)
G116603 NA non-coding downstream 987813 12139002 ~ 12142135 (+)
AMCG00018422 NA other upstream 851002 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 1096740 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 1130590 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 1530345 9606661 ~ 9612918 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 1578699 9562061 ~ 9564564 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 101170 11252359 ~ 11256165 (+)
G116585 rbbp6,LOC107689611 other downstream 815058 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 1338278 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 1351834 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 1392356 12543545 ~ 12611879 (+)

Expression


Co-expression Network