AMCG00018445


Basic Information

Item Value
gene id AMCG00018445
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11131545 ~ 11139307 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018445
GTGTGAGTTGTGGACAGCAGCGGTAGAGGTAACAGTAGCAGTATGAGCCAGATGTACGACACAGTGGAGCCCAGTGtggtggatgaggagatgcTGCAGAGGGCTGTGGAGGAGCAGGGCCCTCAGAACCGGGCCGGCCACATTGCCAAGGAGGAGGGCATCGAGTTCAGAGAGGTGCACCAGCTGCGCCTGGACTATAAGAACATCCTGAAGATTGACCACTTGTGGCAATTCACCAATCTTACCAAACTGCAGCTGGACAACAACATCATCGAGAAGATCGAAGGACTAGACAGCCTGCGCAACCTAGTGTGGctggacctgTCATTCAACAACATCGAGGTAATCGAGGGACTGGAATCGCTGGAGAAACTGCGGGATCTGAGTTTGTATAACAACCGGATCTCTGTCATCGAAAACATGGACAATCTTCAGCAGCTGCAGGTCCTCTCCCTTGGAAATAACTTCCTGGCCCAGCTGGACAATGCAGTTTACCTGCGCAAGTTTAAAAGGCTACGTACTCTGAACCTGGCTGGCAACCCCATCCACAAAGACGAGCGCTACAAAATCTTCATCGCAGCCTACATGCCTGAGCTGGTCTACCTGGACTACAGGCTGCTGGACGACAACACACGCGAGGTGGCCAGCGTGCAGTACCAGTACGCCATCGAGGAGCTGAGACAAAACGAGGCCCTGGAGCAGCAGGGGCAGGAGGAGCGGCACaggcaggaggaggagctgcagctgcacaagGCCGCCTATGTGGAGTTCCTGAATGGTCCATCTCTGTTTGACAGCATGTATGCTGAAGACACAGAAGCTGCCAAGCTAGCCTACCTACCTGGAGTGGCCCAGCTACTGGAATCCTACAGCAGCCAGTTTGTAGCACTGTGTCAGCAGGTGTTCACGCTGGGGCTGGAGCAGCACGAGAGGAGGGAGGATGAGGTCAGCGCCTTCTTCAGTTGCATGGGCGAGGCTGTGAGCAACAACCAAGAGAGGGCGGCATTGAAAGTGAGCACTTTCGAGAAGGAGAGGCAAGAGGTGTTCAGAGAGCTGCAAAAGATGACTGAGCCAAAGCTGCTGGTGACGCGGCTGGCCCAGTGTGTGGAGGAGACTGTTCAGCTGTGCGACTGCCTCATGACCCTGGAGCTGCAGCTGGTCGACCAACTGGAGgaCATCGTCAAGGACTTTGAACGGAACATCTCTGATATGGTGTCTGGGTTCATTGAGACCGTACAGGgtggcagtagtagtagtagtagtggcgGTGGGGGTTCTAGGTCCACAGTCCTTCTTGTATCCACTCTTCCTTATTGGGAGTTCACATTCGCCCAGTGCCGAGACCTGGAGAACAACCACCACGAGAAGCTGCTAGAGATTGCAGTGGCAACCCTGGAGAAGGTGGCCAAGAATGAGCTGGTGGAGGACCTGTCTGACGACATCCGTATGCTGCTGGTGGATAAGGACACAGTCATCAATGCAGTCAGTGCATCCCATGACACACACCTGCTAAAGATCGACAACCGGGAGGATGAACTGATGACCAAAATCAACTCTTGGAGCACCACGCTGATCGAGAAGGTCCACAGCGATGAGGTGGAGCGAAACCGCAAGCGCATTAGTGAGATTCACACATACATTGACTACCTGAGAGAGCAGCTGGATGACCTGGAGCTGCAGGAGACACTGTAGATAGACGGAGAAGTGGAGCTGCAAACAATTGCATTTcataagttgttttttttacaaaaagtgTGTTcgttgctgttttgtttaaatgcc

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process

KEGG:

id description
ko03030 DNA replication
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018445 True 1782 mRNA 0.53 12 11131545 11139307

Neighbor

gene id symbol gene type direction distance location
AMCG00018433 NA coding upstream 78200 11047982 ~ 11053345 (+)
AMCG00018436 NA coding upstream 135524 10992157 ~ 10996021 (+)
AMCG00018435 LOC107699871,LOC105888715,LOC106589575,LOC106609787,LOC108274201,LOC107669229 coding upstream 156066 10958565 ~ 10975479 (+)
AMCG00018434 NA coding upstream 197178 10925036 ~ 10934367 (+)
AMCG00018432 trrap coding upstream 522417 10574896 ~ 10609128 (+)
AMCG00018444 gid4,LOC107724729,LOC106601817,LOC107555661 coding downstream 3956 11143263 ~ 11151189 (+)
AMCG00018443 NA coding downstream 26636 11165943 ~ 11170854 (+)
AMCG00018441 NA coding downstream 57809 11197116 ~ 11199442 (+)
AMCG00018442 rps2,rs2 coding downstream 63881 11203188 ~ 11209510 (+)
AMCG00018453 NA coding downstream 157042 11296349 ~ 11296846 (+)
G116374 NA non-coding upstream 47756 11061569 ~ 11083789 (+)
G116358 NA non-coding upstream 151860 10977022 ~ 10979685 (+)
G116354 NA non-coding upstream 392370 10738286 ~ 10739175 (+)
G116303 NA non-coding upstream 771642 10359682 ~ 10359903 (+)
G116302 NA non-coding upstream 774188 10355972 ~ 10357357 (+)
G116477 NA non-coding downstream 271498 11410805 ~ 11412070 (+)
G116479 NA non-coding downstream 276174 11415481 ~ 11415738 (+)
G116546 NA non-coding downstream 589502 11728809 ~ 11818089 (+)
G116601 NA non-coding downstream 987143 12126450 ~ 12126699 (+)
G116603 NA non-coding downstream 999695 12139002 ~ 12142135 (+)
AMCG00018422 NA other upstream 839284 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 1085022 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 1118872 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 1518627 9606661 ~ 9612918 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 1566981 9562061 ~ 9564564 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 113052 11252359 ~ 11256165 (+)
G116585 rbbp6,LOC107689611 other downstream 826940 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 1350160 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 1363716 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 1404238 12543545 ~ 12611879 (+)

Expression


Co-expression Network