AMCG00018449 (msrb1,LOC107376545,LOC105933050)


Basic Information

Item Value
gene id AMCG00018449
gene name msrb1,LOC107376545,LOC105933050
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11252359 ~ 11256165 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018449
GCCGCATTCAGTGGCTTATATGAGACAGCGTTGCCCTCTAGTGGCAGTAATTGCACTAAGGCCGCGTCACATGACCCGCTGCGTGGCCACCTGACCAAACCCGTAAAGACGCGTCCTGACGGCAGCACAGCACCCGAAAGTTTTCTCCCAATTGCAGTTGGGATTTCAAAGACATTTCTTCTGATAGTCTCCAGCAATGTCTTTCTGCTCTTTTATGGGAGGTGAGGTCTTTAAAGATCACTTCAAACCTGGCATCTACGTGTGTGTAAAGTGCGGCCACAGGCTGTTTTCCAGCCGGTCGAAGTACGAGCACTCGTCCCCATGGCCCGCCTTCACGGAGACCCTTCAGGAGGACAGCGTGTCCAAATACGTGGAGAGACCCGGAGCCCTGAAGgtGTCCTGTGGGAAGTGTGGGAATGGACTGGGTCACGAGTTCCTGAACGACGGGCCCAAGCAAGGACTGTCCCGCTTCTGAATATTCAGCAGCACGCTCAAGTTTGTCCCTAAAGacaaGGTGGACGGACCCAAGGGTGGACAGTAGGGCGATGTGCGATTACCAGAAGAGAAGACATGACTAGGCTGTGCTTTGGGGCCCCGCGTTTTGATAGTGTCTGGACAGTTGATGAAGTGCTCTGGAAAAAAACCCCAAGGGGACGTTCAGGGCACCGATGGGTAAATGGCCACACTAGACAGCAAGAGCGCGATTTCTATTGAATTGTTTCTCCTCCAGGGTCTCGGACTACATTCCTGAAAGGGCACACACTCGTTCCAGTTCGGTTATTTAAATCGGTTATGTTTGAACATTTAAGCAGATTTACTGGGTGATTAATTCATCACCCCATTTCAGTTACTcctaaaattaaaacagtttgtacatgctttttatttttgtatttagtagGAGTAGCTGAACATAATGTATGTATGGGAATGCCAGTGAGTTAGAAACATATGAGCAACTGAAATGGCTGCACgaataatagaaataaaataatccttttATATGGCCTTAAGATATTTTACGGTTGTTGGCTGAAAAGATTGCTTTGATTCATTTGCGATGTCATTTTGCAAACTCAAAGAGAAGCATTGAACCCATCCAGCCAAGCAGACCGATTTAAGTAATCACGAGATGTTTCTGCAACAAAAGATGACTGTGGCCCACCAGGAATTTACTTCAAGACCCCTGCTgtacacagacatgcacataATGAACACACTGCAGGTATTTTAAAAGACTTCTGTCATGTTTGTCTCGAGGAAGGCAAGTGTTTACAATTTGAgtttaatcaataataatgataatgtgtAAAGAGATGCCTTAAGGGttgatttttaaaactttgcttttgactCCCCTCTAATATTAAATCATTAgatctttattaaattattatggaGCAGGAGAGAATCCCTCCCCTCCCTGATGGAACTCAAGATTCCAGAATGTGAGAGTCTTCTGGGATACCCCTGTAATAACATCTGAGCAGGTTTTTATTTCATCAGTCGATAAAATCAACCCCTGGAATTAGAAACAAATGCCGCTACTTTGATTTACgcattcaaatattgttttccattcCGACaaaccctatatatatatttttttttatttcaccatttatttCACTCATTGAATTATTGACACGATGGGGGagtaagtcttttttttttaattttgtcttttgaGAACTTTGGCAATACACACAGGCAAGGAAAGGAACCCATCATTGCCTAACATCATTTCAAGCTTCCATTTCTACGTCAAGGGGATCTTTTGCTTCAATTACTGCTGCTATATCTGTGACAGAGCTAAAATGAGAGGAGAGACCACAACTCATAGGAACAGACCAAGGCTGCATGCAGTGAACTCTGAGTGCTTATTTctaagttgctctggataagggcatctgcctagaaataaataattgtgagATTACACAGacaagaaaataagtaattttaaGCAcatcttcctttatttttaatagtataAAAGAATACTGTATAGGAATAGGTATTGAACCATGGGATTGGGGGTTAAGTAATGTACcgctcatttatttttatactatcCTCCCTaccaaatacaattttaaaagcacttaaaaaaagttttcactATGTTAACTATGGAGACAAAATGACAGGTTACAGCTTTGGAAATGCTAGTTTCCTCTCCAGCAGCACACAAAGCTTCAATTCACTGCATCTCAATATTGACTGTCGGCCTGTGACCAAAAGAATAATACTTTATGTCACGGTAATGTACAGCAGGGAACAGATGAATCCCAGTCTCTGGTCTCTGAACACTGAAACCAAACAGCTCTCTCCTCTTTCTACTTTTATGGTCAGGTCAAGTCAGGGCAGTAGTTAGAGGCTATTTTTCTAAGGGTTTTAGAAATGATCTTTTAATATCACTTGTACACTTGTAAGGAAAATGGGTTTGTAGCAAGCTGTAAATGATTCACAGGAGTGCTTTGCTCTCTGAAATCCAACAGTTCACTGCACACTAAAACAAAGTAAGTTATTTAACATAATCTCCAGCAAAGCAGTTAATCGTCTGTGCCAAAGCGGATGGACTTGAGTTTAAGGGGGTTGAAGTACtgcattgacacacacacagtggataTAACTGGAAAAGACAAGGACTTGTGATCTTCCAGCCAACATAGCTGCTTTCTGGTACCTGGCATAAAGATGTACTCAACTGGACTTTAGCAGTTTAAAtatacgttttattttttttaagccgAATTGTGTAATGCCAAATATCCCTGTTTAGCTCCACAGTTGTCTTAaatactgaaacactgaaataaaaatgattctCAGAAACTCACAAAA
>TU145839
GCCGCGTCACATGACCCGCTGCGTGGCCACCTGACCAAACCCGTAAAGACGCGTCCTGACGGCAGCACAGCACCCGAAAGTTTTCTCCCAATTGCAGTTGGGATTTCAAAGACATTTCTTCTGATAGTCTCCAGCAATGTCTTTCTGCTCTTTTATGGGAGGTGAGGTCTTTAAAGATCACTTCAAACCTGGCATCTACGTGTGTGTAAAGTGCGGCCACAGGCTGTTTTCCAGCCGGTCGAAGTACGAGCACTCGTCCCCATGGCCCGCCTTCACGGAGACCCTTCAGGAGGACAGCGTGTCCAAATACGTGGAGAGACCCGGAGCCCTGAAGgtGTCCTGTGGGAAGTGTGGGAATGGACTGGGTCACGAGTTCCTGAACGACGGGCCCAAGCAAGGACTGTCCCGCTTCTGAATATTCAGCAGCACGCTCAAGTTTGTCCCTAAAGacaaGGTGGACGGACCCAAGGGTGGACAGTAGGGCGATGTGCGATTACCAGAAGAGAAGACATGACTAGGCTGTGCTTTGGGGCCCCGCGTTTTGATAGTGTCTGGACAGTTGATGAAGTGCTCTGGAAAAAAACCCCAAGGGGACGTTCAGGGCACCGATGGGTAAATGGCCACACTAGACAGCAAGAGCGCGATTTCTATTGAATTGTTTCTCCTCCAGGGTCTCGGACTACATTCCTGAAAGGGCACACACTCGTTCCAGTTCGGTTATTTAAATCGGTTATGTTTGAACATTTAAGCAGATTTACTGGGTGATTAATTCATCACCCCATTTCAGTTACTcctaaaattaaaacagtttgtacatgctttttatttttgtatttagtagGAGTAGCTGAACATAATGTATGTATGGGAATGCCAGTGAGTTAGAAACATATGAGCAACTGAAATGGCTGCACgaataatagaaataaaataatccttttATATGGCCTTAAGATATTTTACGGTTGTTGGCTGAAAAGATTGCTTTGATTCATTTGCGATGTCATTTTGCAAACTCAAAGAGAAGCATTGAACCCATCCAGCCAAGCAGACCGATTTAAGTAATCACGAGATGTTTCTGCAACAAAAGATGACTGTGGCCCACCAGGAATTTACTTCAAGACCCCTGCTgtacacagacatgcacataATGAACACACTGCAGGTATTTTAAAAGACTTCTGTCATGTTTGTCTCGAGGAAGGCAAGTGTTTACAATTTGAgtttaatcaataataatgataatgtgtAAAGAGATGCCTTAAGGGttgatttttaaaactttgcttttgactCCCCTCTAATATTAAATCATTAgatctttattaaattattatggaGCAGGAGAGAATCCCTCCCCTCCCTGATGGAACTCAAGATTCCAGAATGTGAGAGTCTTCTGGGATACCCCTGTAATAACATCTGAGCAGGTTTTTATTTCATCAGTCGATAAAATCAACCCCTGGAATTAGAAACAAATGCCGCTACTTTGATTTACgcattcaaatattgttttccattcCGACaaaccctatatatatatttttttttatttcaccatttatttCACTCATTGAATTATTGACACGATGGGGGagtaagtcttttttttttaattttgtcttttgaGAACTTTGGCAATACACACAGGCAAGGAAAGGAACCCATCATTGCCTAACATCATTTCAAGCTTCCATTTCTACGTCAAGGGGATCTTTTGCTTCAATTACTGCTGCTATATCTGTGACAGAGCTAAAATGAGAGGAGAGACCACAACTCATAGGAACAGACCAAGGCTGCATGCAGTGAACTCTGAGTGCTTATTTctaagttgctctggataagggcatctgcctagaaataaataattgtgagATTACACAGacaagaaaataagtaattttaaGCAcatcttcctttatttttaatagtataAAAGAATACTGTATAGGAATAGGTATTGAACCATGGGATTGGGGGTTAAGTAATGTACcgctcatttatttttatactatcCTCCCTaccaaatacaattttaaaagcacttaaaaaaagttttcactATGTTAACTATGGAGACAAAATGACAGGTTACAGCTTTGGAAATGCTAGTTTCCTCTCCAGCAGCACACAAAGCTTCAATTCACTGCATCTCAATATTGACTGTCGGCCTGTGACCAAAAGAATAATACTTTATGTCACGGTAATGTACAGCAGGGAACAGATGAATCCCAGTCTCTGGTCTCTGAACACTGAAACCAAACAGCTCTCTCCTCTTTCTACTTTTATGGTCAGGTCAAGTCAGGGCAGTAGTTAGAGGCTATTTTTCTAAGGGTTTTAGAAATGATCTTTTAATATCACTTGTACACTTGTAAGGAAAATGGGTTTGTAGCAAGCTGTAAATGATTCACAGGAGTGCTTTGCTCTCTGAAATCCAACAGTTCACTGCACACTAAAACAAAGTAAGTTATTTAACATAATCTCCAGCAAAGCAGTTAATCGTCTGTGCCAAAGCGGATGGACTTGAGTTTAAGGGGGTTGAAGTACtgcattgacacacacacagtggataTAACTGGAAAAGACAAGGACTTGTGATCTTCCAGCCAACATAGCTGCTTTCTGGTACCTGGCATAAAGATGTACTCAACTGGACTTTAGCAGTTTAAAtatacgttttattttttttaagccgAATTGTGTAATGCCAAATATCCCTGTTTAGCTCCACAGTTGTCTTAaatactgaaacactgaaataaaaatgattctCAGAAACTCACAAAACACTGTACTACATCATTCATTTTGGAAGTGAGTGCGTTCTGTGTCTTTGCTGCGGCTGAAGCCGATGTCAG
>TU145840
GCCGCGTCACATGACCCGCTGCGTGGCCACCTGACCAAACCCGTAAAGACGCGTCCTGACGGCAGCACAGCACCCGAAAGTTTTCTCCCAATTGCAGTTGGGATTTCAAAGACATTTCTTCTGATAGTCTCCAGCAATGTCTTTCTGCTCTTTTATGGGAGGTGAGGTCTTTAAAGATCACTTCAAACCTGGCATCTACGTGTGTGTAAAGTGCGGCCACAGGCTGTTTTCCAGCCGGTCGAAGTACGAGCACTCGTCCCCATGGCCCGCCTTCACGGAGACCCTTCAGGAGGACAGCGTGTCCAAATACGTGGAGAGACCCGGAGCCCTGAAGGTCGGTATCTATCAGCCTGTTACGATCTCCCAGCCCATGTCTGTCTGCTGACATATGCATGCTCTCCATTGCAAACCTGAATACGGTGCATGCAGCATCTGAAATAGCAGAGCAGGACCTCCTGAATCTTGATTCTTCCCTGATTTCTGTGAAAGGTTTTTATAGCACAAAAAGCTGCACAAGTGTGATTGGTTGGCATGCTTTCTGGAAATAAGCAAACTGTCTCCTCACACACAGTATTAGCCCAGCGCTATATTTGCTGATGATTGCATGACCTGAAAACGCACCTTTTCAGACCGCACATGTAGACCCTATGATCTTGCTACTCTTCTCTCATTTTACTTGCAAACTGCTTATGGTAATCTGAacaagttttctgtttaataatcATCCATATTCTAAGGatttcataaatatgtatatgtgcgGTATACTCTGCATTCATGCATACACCCCCACAGCCTTaagtctctgtgtgtttgtttgaggtGTCCTGTGGGAAGTGTGGGAATGGACTGGGTCACGAGTTCCTGAACGACGGGCCCAAGCAAGGACTGTCCCGCTTCTGAATATTCAGCAGCACGCTCAAGTTTGTCCCTAAAGacaaGGTGGACGGACCCAAGGGTGGACAGTAGGGCGATGTGCGATTACCAGAAGAGAAGACATGACTAGGCTGTGCTTTGGGGCCCCGCGTTTTGATAGTGTCTGGACAGTTGATGAAGTGCTCTGGAAAAAAACCCCAAGGGGACGTTCAGGGCACCGATGGGTAAATGGCCACACTAGACAGCAAGAGCGCGATTTCTATTGAATTGTTTCTCCTCCAGGGTCTCGGACTACATTCCTGAAAGGGCACACACTCGTTCCAGTTCGGTTATTTAAATCGGTTATGTTTGAACATTTAAGCAGATTTACTGGGTGATTAATTCATCACCCCATTTCAGTTACTcctaaaattaaaacagtttgtacatgctttttatttttgtatttagtagGAGTAGCTGAACATAATGTATGTATGGGAATGCCAGTGAGTTAGAAACATATGAGCAACTGAAATGGCTGCACgaataatagaaataaaataatccttttATATGGCCTTAAGATATTTTACGGTTGTTGGCTGAAAAGATTGCTTTGATTCATTTGCGATGTCATTTTGCAAACTCAAAGAGAAGCATTGAACCCATCCAGCCAAGCAGACCGATTTAAGTAATCACGAGATGTTTCTGCAACAAAAGATGACTGTGGCCCACCAGGAATTTACTTCAAGACCCCTGCTgtacacagacatgcacataATGAACACACTGCAGGTATTTTAAAAGACTTCTGTCATGTTTGTCTCGAGGAAGGCAAGTGTTTACAATTTGAgtttaatcaataataatgataatgtgtAAAGAGATGCCTTAAGGGttgatttttaaaactttgcttttgactCCCCTCTAATATTAAATCATTAgatctttattaaattattatggaGCAGGAGAGAATCCCTCCCCTCCCTGATGGAACTCAAGATTCCAGAATGTGAGAGTCTTCTGGGATACCCCTGTAATAACATCTGAGCAGGTTTTTATTTCATCAGTCGATAAAATCAACCCCTGGAATTAGAAACAAATGCCGCTACTTTGATTTACgcattcaaatattgttttccattcCGACaaaccctatatatatatttttttttatttcaccatttatttCACTCATTGAATTATTGACACGATGGGGGagtaagtcttttttttttaattttgtcttttgaGAACTTTGGCAATACACACAGGCAAGGAAAGGAACCCATCATTGCCTAACATCATTTCAAGCTTCCATTTCTACGTCAAGGGGATCTTTTGCTTCAATTACTGCTGCTATATCTGTGACAGAGCTAAAATGAGAGGAGAGACCACAACTCATAGGAACAGACCAAGGCTGCATGCAGTGAACTCTGAGTGCTTATTTctaagttgctctggataagggcatctgcctagaaataaataattgtgagATTACACAGacaagaaaataagtaattttaaGCAcatcttcctttatttttaatagtataAAAGAATACTGTATAGGAATAGGTATTGAACCATGGGATTGGGGGTTAAGTAATGTACcgctcatttatttttatactatcCTCCCTaccaaatacaattttaaaagcacttaaaaaaagttttcactATGTTAACTATGGAGACAAAATGACAGGTTACAGCTTTGGAAATGCTAGTTTCCTCTCCAGCAGCACACAAAGCTTCAATTCACTGCATCTCAATATTGACTGTCGGCCTGTGACCAAAAGAATAATACTTTATGTCACGGTAATGTACAGCAGGGAACAGATGAATCCCAGTCTCTGGTCTCTGAACACTGAAACCAAACAGCTCTCTCCTCTTTCTACTTTTATGGTCAGGTCAAGTCAGGGCAGTAGTTAGAGGCTATTTTTCTAAGGGTTTTAGAAATGATCTTTTAATATCACTTGTACACTTGTAAGGAAAATGGGTTTGTAGCAAGCTGTAAATGATTCACAGGAGTGCTTTGCTCTCTGAAATCCAACAGTTCACTGCACACTAAAACAAAGTAAGTTATTTAACATAATCTCCAGCAAAGCAGTTAATCGTCTGTGCCAAAGCGGATGGACTTGAGTTTAAGGGGGTTGAAGTACtgcattgacacacacacagtggataTAACTGGAAAAGACAAGGACTTGTGATCTTCCAGCCAACATAGCTGCTTTCTGGTACCTGGCATAAAGATGTACTCAACTGGACTTTAGCAGTTTAAAtatacgttttattttttttaagccgAATTGTGTAATGCCAAATATCCCTGTTTAGCTCCACAGTTGTCTTAaatactgaaacactgaaataaaaatgattctCAGAAACTCACAAAACACTGTACTACATCATTCATTTTGGAAGTGAGTGCGTTCTGTGTCTTTGCTGCGGCTGAAGCCGATGTCAG

Function

symbol description
msrb1 Predicted to enable actin binding activity; peptide-methionine (R)-S-oxide reductase activity; and zinc ion binding activity. Predicted to be involved in actin filament polymerization; innate immune response; and protein repair. Located in nucleoplasm.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018449 False 2847 mRNA 0.41 4 11252359 11256094
TU145839 False 2858 lncRNA 0.41 4 11252419 11256165
TU145840 True 3346 lncRNA 0.41 3 11252419 11256165

Neighbor

gene id symbol gene type direction distance location
AMCG00018442 rps2,rs2 coding upstream 42849 11203188 ~ 11209510 (+)
AMCG00018441 NA coding upstream 52917 11197116 ~ 11199442 (+)
AMCG00018443 NA coding upstream 81505 11165943 ~ 11170854 (+)
AMCG00018444 gid4,LOC107724729,LOC106601817,LOC107555661 coding upstream 101170 11143263 ~ 11151189 (+)
AMCG00018445 NA coding upstream 113052 11131545 ~ 11139307 (+)
AMCG00018453 NA coding downstream 40184 11296349 ~ 11296846 (+)
AMCG00018454 LOC107694825,LOC107757004,LOC101474240,LOC102192248 coding downstream 62006 11318171 ~ 11326768 (+)
AMCG00018452 NA coding downstream 100794 11356959 ~ 11370202 (+)
AMCG00018450 LOC106606699 coding downstream 115379 11371544 ~ 11377395 (+)
AMCG00018451 LOC108432196,LOC105891623,LOC100699516 coding downstream 121734 11377899 ~ 11384556 (+)
G116374 NA non-coding upstream 168570 11061569 ~ 11083789 (+)
G116358 NA non-coding upstream 272674 10977022 ~ 10979685 (+)
G116354 NA non-coding upstream 513184 10738286 ~ 10739175 (+)
G116303 NA non-coding upstream 892456 10359682 ~ 10359903 (+)
G116302 NA non-coding upstream 895002 10355972 ~ 10357357 (+)
G116477 NA non-coding downstream 154640 11410805 ~ 11412070 (+)
G116479 NA non-coding downstream 159316 11415481 ~ 11415738 (+)
G116546 NA non-coding downstream 472644 11728809 ~ 11818089 (+)
G116601 NA non-coding downstream 870285 12126450 ~ 12126699 (+)
G116603 NA non-coding downstream 882837 12139002 ~ 12142135 (+)
AMCG00018422 NA other upstream 960098 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 1205836 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 1239686 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 1639441 9606661 ~ 9612918 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 1687795 9562061 ~ 9564564 (+)
G116585 rbbp6,LOC107689611 other downstream 710082 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 1233302 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 1246858 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 1287380 12543545 ~ 12611879 (+)
G116832 NA other downstream 1997178 13253343 ~ 13255794 (+)

Expression


Co-expression Network