AMCG00018450 (LOC106606699)


Basic Information

Item Value
gene id AMCG00018450
gene name LOC106606699
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11371544 ~ 11377395 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018450
GTTTAAAGGTAGTGATGCTCCGCGGTGCTTAAAACCGGACAGTTTTTAGTTCCTGTACATGCGATAATATTAGCAGACAGCGGCTGAGTTGCTATGTTATTCAGGTCAGTGCTGGGTGCCTGCACTCTTGGTGTAGTAGGAGCTGCTGCGTATAAAATCGTTCCGCCACGGGTTCGTGCAGCCAGCCTCCATTCCTGCACAAAGCCTTCAGTATTCGCTCAATCCGACATGAAGATAGAGTTACTCCCTGCACTGACAGACAACTACATGTACCTTCTCATTGATGAGGAGACCAAGGAAGCTGCCATAGTGGACCCAGTGGAGCCGTCCAAGGTCGTGGATGCAGTTAAGAAGCATGGAGTGAAGCTAACCACTGTGCTTACCACACATCATCACTGGGACCATGCTGGGGGGAATGAGAAGCTGGTGAAGCTGGTATCAGGGCTGAAGATCTATGGAGGAGATGACAGGGTGGGGGCTTTAACTCAGAAAGTAACGCACTATAATACCTTCAAGATTGGCTCTTTGAATGTGAAGTGCCTATTTACACCTTGTCACACATCTGGTCACATCTGCTATTTTGTCACCAAAGACAATAGCTCTGAGCCCCCAGCTGTTTTCACAGGGGACACGCTGTTTGTGGCTGGCTGTGGGAAGTTCTTTGAAGGCACTGCTGATGAAATGTACAAGGCTCTAATCGATGTTCTGGGGCGTCTTCCTCCCGAGACAGAAAAGTACAACAATGGAGAACCAACTATCCCGTCTACTGTGGCTGAAGAATTTACCTACAATCCATTCATGAGAGTCAGGGAGAAGTCCGTGCAGGACCATGCAGGAAAATCGGATCCCATTGCCACGATGGGTAGCCTCCGGAAAGAAAAGGACAACTTCCGAGTGCCCAAGGACTGACCCTGCGACAGAGACACTCCGCACTCTCCGTTTCATCCCCGTGCACTGCAAGCTTTAACTAGCTCCCATAGTGAACAACACTGCACGCtctttaattatacatattatgtGTAATTTCTCTGTAAATtgaatgtacaaaaaataaatctatattttaatgtctaaaaaaaaatctaccacCTTTCCTGTTTAAGGGactcaaaacaaaagaagaaattaatagaacatgagaacataataGCAGGGAAACTGTCAAATCCAAAATGTGTGTCTTAACATTGTGTGCAATAGTGttacaattgtttttctttttgtatgtcGTTATAAAGCACTAAGCACAAATGCAAACCTTTTGTTACCTAAGCCATAgttctttaaatttaaatgacaaaCTACCCGTTTTAGTTtagctaaataaaaaaaaaagtttatttttgtctgaattctgatatttacatttagttGCATGTCTAAATGAAATGtgcagaaattacattttaagctgGCAGTTATATTTAATgtggaattattttatataacgGGAAGActatttacaattttatttttaatctttaataaattaagtggTTACATTAGtgtcacattattttcttatgaagtattttatgtttacttttaaaatgactatTTCAAGTTGCTTAACTTAAACCagctaaaaatataatttaaatatagctGTAAGTTGTAAGAAGTTGTCATTTTCCACGTTTCTGTTAAACAATGCAGCGTTGGAGCCTGTGCATATCCATATATCAGCAATAAAGCATGTGGTTGAAGGTGATTAACAATAGCAAATTCTGTTGTTTCTTCTGTGAAGTTTTAAGAGTGGACAAAGAAAAGATAATTGGATGTTGTTTTGGGgttgagggagagagagcattTTGGTTGCA

Function

NR:

description
Hydroxyacylglutathione hydrolase

GO:

id name namespace
GO:0006750 glutathione biosynthetic process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0004416 hydroxyacylglutathione hydrolase activity molecular_function

KEGG:

id description
K01069 gloB, gloC, HAGH; hydroxyacylglutathione hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018450 True 1820 mRNA 0.40 8 11371544 11377395

Neighbor

gene id symbol gene type direction distance location
AMCG00018452 NA coding upstream 1342 11356959 ~ 11370202 (+)
AMCG00018454 LOC107694825,LOC107757004,LOC101474240,LOC102192248 coding upstream 44776 11318171 ~ 11326768 (+)
AMCG00018453 NA coding upstream 74698 11296349 ~ 11296846 (+)
AMCG00018442 rps2,rs2 coding upstream 162034 11203188 ~ 11209510 (+)
AMCG00018441 NA coding upstream 172102 11197116 ~ 11199442 (+)
AMCG00018451 LOC108432196,LOC105891623,LOC100699516 coding downstream 504 11377899 ~ 11384556 (+)
AMCG00018456 mlst8 coding downstream 24563 11401958 ~ 11408807 (+)
AMCG00018463 e4f1,LOC107758096 coding downstream 50288 11427683 ~ 11436200 (+)
AMCG00018465 NA coding downstream 73105 11450500 ~ 11452474 (+)
AMCG00018462 grid2ip,LOC108274076,LOC108432200,LOC106589205 coding downstream 110752 11488147 ~ 11514342 (+)
G116374 NA non-coding upstream 287755 11061569 ~ 11083789 (+)
G116358 NA non-coding upstream 391859 10977022 ~ 10979685 (+)
G116354 NA non-coding upstream 632369 10738286 ~ 10739175 (+)
G116303 NA non-coding upstream 1011641 10359682 ~ 10359903 (+)
G116302 NA non-coding upstream 1014187 10355972 ~ 10357357 (+)
G116477 NA non-coding downstream 33410 11410805 ~ 11412070 (+)
G116479 NA non-coding downstream 38086 11415481 ~ 11415738 (+)
G116546 NA non-coding downstream 351414 11728809 ~ 11818089 (+)
G116601 NA non-coding downstream 749055 12126450 ~ 12126699 (+)
G116603 NA non-coding downstream 761607 12139002 ~ 12142135 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 115379 11252359 ~ 11256165 (+)
AMCG00018422 NA other upstream 1079283 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 1325021 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 1358871 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 1758626 9606661 ~ 9612918 (+)
G116585 rbbp6,LOC107689611 other downstream 588852 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 1112072 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 1125628 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 1166150 12543545 ~ 12611879 (+)
G116832 NA other downstream 1875948 13253343 ~ 13255794 (+)

Expression


Co-expression Network