AMCG00018452


Basic Information

Item Value
gene id AMCG00018452
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11356959 ~ 11370202 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018452
ATGGGCATTGCCTCCTTAGTGCAGACGGTGCGGGGGGTCAGTGGCTTCGACTCTGGCCTCCCCGTGCGGGACTGCAGGGAGCTGCCCCTGATGGGAGTCATGATTGAAAACCCTTTAATTGTAACAAAAGATGCAGAGAAAGAGGAGCGATACAACCCTTCAACACCAAGtttCTACAGGTTGTTAGTGAGTGAAAACCATTCAACAGTCAGGGTCTGCTCTGACATTGAAGCAGACGCCCGGCTTCTGTCTTTACTCCACCTGCCTGTGAAGGATCCACAAGATTTTTACTCACTGGGGGACATTCTTGCAAATGGACAGAGCTTGGATGGAAGAGTCATTAATATTCTAGCAGCTGTTCGATCAGTGGCAGAACCAAAGTTTTTCACGACTGCTGACAGACGCAAAGGACAGAGGTGTGAAGTGAATCTCTTTGATGACACTGTTCCATTCTTTGCTTTGGTCTGCTGGGACAATGAGGCCATTCAGCTTGCGCAGACATGGATTCCAAAAGAGACAGTGCTCTTCATTGCCGACGTCCGAATTACCTTTGATAGATTTCGCAACAGTATGATTGCGACAGTGACCTCGAAAACCATCATTACGGTCAACCCTGACACAAAAGAAGCCAACCTGCTATTCAACTATGCCAGGGAGCTTGCTGAAACTGGAGGACTGGATGAACACATGGACAGGACAGGAGATCAAGTGAATTTGGACACTATTGTAGATGTATTTAATGTGCATCAGCTGAAACTCAGAGCCCAGCAAAATCCCGACAAGCCTGAAACCATCTATGCAATCATGTATGCTTTCATCACCACAATGAATCTTGACTCATCCCTTTCCAAATTAATACGAAACCGGTGTGCAAAGTGCAGATTCACAGTAAGTGAAGAAACACAGAGCTGCTCCAATGTGGCATGCCCAGGGTTAGGAGACTCTGCAGAGGTCATAACTGGCTTTGATTTACTGGTGGACCTCACTGATCACACAGGCACACTGCAGTCCTGTAACCTGTCCGGCACTGCTGCTGAAAAGACCCTGGGCTGTACTGTGCTTCTAACTCATAAAGCCAGGAGTGGTCTGAGAGTGAATGTCCTGTCTTGCACACTGGCTGACCCTGGGGAAGTGAGGCAGAGCTTACCCAGTTCAGGACTGTTAATGCAGAATTAGAGCCAAGCCCAGGCCAGCATGGGCAATATTACCTTtttaacatgttaaaaaaaagacccagatttgtatttcttttaactAAACTAACTGAAGAGGTGGCAAATTCTAACACCttaaatgtatgaatgcatATTCTTAACTGTCAGAAACAATAGATTGGAATTTACAAAATTGAGTTCATATGAATGTAAGACATTAATGTCTGAGAAAAGACTATGTTTAGTATATCTGTTTTAATCAGATATTGTGTATATTTGGTATGGTTTATTACATGATGTTATGCGACTTTTTATTATCAATAAACTTGAAAAAACGGAATGCTTGAATATTTgcctgaataaatacataatgtacttaagaaaacaaagtttacagatTACAATTAAATGCTGATCTGTGagaatttacaaatgtaaatagattTATATTTACACAACATTGCATGTGAGAAA

Function

GO: NA

KEGG:

id description
K22420 MEIOB; meiosis-specific with OB domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018452 True 1628 mRNA 0.43 11 11356959 11370202

Neighbor

gene id symbol gene type direction distance location
AMCG00018454 LOC107694825,LOC107757004,LOC101474240,LOC102192248 coding upstream 30191 11318171 ~ 11326768 (+)
AMCG00018453 NA coding upstream 60113 11296349 ~ 11296846 (+)
AMCG00018442 rps2,rs2 coding upstream 147449 11203188 ~ 11209510 (+)
AMCG00018441 NA coding upstream 157517 11197116 ~ 11199442 (+)
AMCG00018443 NA coding upstream 186105 11165943 ~ 11170854 (+)
AMCG00018450 LOC106606699 coding downstream 1342 11371544 ~ 11377395 (+)
AMCG00018451 LOC108432196,LOC105891623,LOC100699516 coding downstream 7697 11377899 ~ 11384556 (+)
AMCG00018456 mlst8 coding downstream 31756 11401958 ~ 11408807 (+)
AMCG00018463 e4f1,LOC107758096 coding downstream 57481 11427683 ~ 11436200 (+)
AMCG00018465 NA coding downstream 80298 11450500 ~ 11452474 (+)
G116374 NA non-coding upstream 273170 11061569 ~ 11083789 (+)
G116358 NA non-coding upstream 377274 10977022 ~ 10979685 (+)
G116354 NA non-coding upstream 617784 10738286 ~ 10739175 (+)
G116303 NA non-coding upstream 997056 10359682 ~ 10359903 (+)
G116302 NA non-coding upstream 999602 10355972 ~ 10357357 (+)
G116477 NA non-coding downstream 40603 11410805 ~ 11412070 (+)
G116479 NA non-coding downstream 45279 11415481 ~ 11415738 (+)
G116546 NA non-coding downstream 358607 11728809 ~ 11818089 (+)
G116601 NA non-coding downstream 756248 12126450 ~ 12126699 (+)
G116603 NA non-coding downstream 768800 12139002 ~ 12142135 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 100794 11252359 ~ 11256165 (+)
AMCG00018422 NA other upstream 1064698 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 1310436 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 1344286 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 1744041 9606661 ~ 9612918 (+)
G116585 rbbp6,LOC107689611 other downstream 596045 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 1119265 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 1132821 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 1173343 12543545 ~ 12611879 (+)
G116832 NA other downstream 1883141 13253343 ~ 13255794 (+)

Expression


Co-expression Network