AMCG00018454 (LOC107694825,LOC107757004,LOC101474240,LOC102192248)


Basic Information

Item Value
gene id AMCG00018454
gene name LOC107694825,LOC107757004,LOC101474240,LOC102192248
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11318171 ~ 11326768 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018454
ATGCGGGCAAGGGGCGAGGGGGAAGCTCTCATCGTCCGGATGTTCTCCTCGCGCTGGCACTGGAATCGTCTGGATGTTTTCCTCTCACCCACTGGGTTACGAGCTGCAGGCAGCATTCTGCTGATGTGTCAGCAAGCCCCAGCACACGCCCCTCCACCCCTGGCCACCCGGCAGCCTCGGTCGAGGCCCGAGGGAGCCATAGCCGTCCGGAACCTGATGCCGCGCACTCTGGATGGCCAGATCACCATGGAGAAGACACCCAGCTACTTCGTGACCAAGGAGGCACCGCGCCGCGTCTTCTCCATGAGCCGTGACACCAAACTGATCGTGGTGGTGCGTGACCCCGTGACCCGGGCCGTGTCCGACTACACGCAGACCCTGTCCAAGAACCCAGGGCTGCCCGCTTTCCAGCAGCTGGCCTTCAAGAACACGAGCACGGGGCTCATCGACACGGCCTGGAGTGCCGTACGCATCGGCATCTACGCCAAGCACCTGGAGAACTGGCTGCAGTTCTTCCCCCTGTCACGCTTCTTGTTCGTCAGCGGCGAGCGACTGGTGAGTGACCCAGCGGGGGAGATGGGCCGTGTGCAGGACTTCCTAGGGCTCAAGCGGGTCATCACAGACAAACACTTTTACTTCAATGAGACCAAGGGCTTCCCCTGCCTCAAGAAGCCGGAGGGCAGCAGCCGCCCACGCTGCCTGGGGAAGTCCAAGGGCCGCCCGCACCCCCACATCCCCCCCGAGGTGCTGCATCGCCTGCGGGACTTCTACCGGCCCTTCAACCTCAAGTTTTACCAAATGACCAGTCAGGACTTCGGCTGGGACTGA

Function

NR:

description
PREDICTED: heparan sulfate glucosamine 3-O-sulfotransferase 6-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018454 True 828 mRNA 0.63 3 11318171 11326768

Neighbor

gene id symbol gene type direction distance location
AMCG00018453 NA coding upstream 21325 11296349 ~ 11296846 (+)
AMCG00018442 rps2,rs2 coding upstream 108661 11203188 ~ 11209510 (+)
AMCG00018441 NA coding upstream 118729 11197116 ~ 11199442 (+)
AMCG00018443 NA coding upstream 147317 11165943 ~ 11170854 (+)
AMCG00018444 gid4,LOC107724729,LOC106601817,LOC107555661 coding upstream 166982 11143263 ~ 11151189 (+)
AMCG00018452 NA coding downstream 30191 11356959 ~ 11370202 (+)
AMCG00018450 LOC106606699 coding downstream 44776 11371544 ~ 11377395 (+)
AMCG00018451 LOC108432196,LOC105891623,LOC100699516 coding downstream 51131 11377899 ~ 11384556 (+)
AMCG00018456 mlst8 coding downstream 75190 11401958 ~ 11408807 (+)
AMCG00018463 e4f1,LOC107758096 coding downstream 100915 11427683 ~ 11436200 (+)
G116374 NA non-coding upstream 234382 11061569 ~ 11083789 (+)
G116358 NA non-coding upstream 338486 10977022 ~ 10979685 (+)
G116354 NA non-coding upstream 578996 10738286 ~ 10739175 (+)
G116303 NA non-coding upstream 958268 10359682 ~ 10359903 (+)
G116302 NA non-coding upstream 960814 10355972 ~ 10357357 (+)
G116477 NA non-coding downstream 84037 11410805 ~ 11412070 (+)
G116479 NA non-coding downstream 88713 11415481 ~ 11415738 (+)
G116546 NA non-coding downstream 402041 11728809 ~ 11818089 (+)
G116601 NA non-coding downstream 799682 12126450 ~ 12126699 (+)
G116603 NA non-coding downstream 812234 12139002 ~ 12142135 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 62006 11252359 ~ 11256165 (+)
AMCG00018422 NA other upstream 1025910 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 1271648 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 1305498 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 1705253 9606661 ~ 9612918 (+)
G116585 rbbp6,LOC107689611 other downstream 639479 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 1162699 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 1176255 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 1216777 12543545 ~ 12611879 (+)
G116832 NA other downstream 1926575 13253343 ~ 13255794 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000301_01848605_01870368 NA coding CI01000301 null 1848475 ~ 1870509 (-)