AMCG00018463 (e4f1,LOC107758096)


Basic Information

Item Value
gene id AMCG00018463
gene name e4f1,LOC107758096
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11427683 ~ 11436200 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018463
ATGagtggagaaaataataatacggCAGAAACAGTGGATGAGCAAACGGTAGCCGGCAACATCATCACCATCCACACCACACTCGGAGACGAAGaTGAGGATGTGCACAAGTGTGGCCGCTGCCAGGTGGAGTTCACCAGCCTGGAAGCTTTCATCCAACACAAACTCCAGAACAACTGCCAGAGGATCCAGGAGGTCCCAGGCTCTCAAGGGCCCAATGAGGAGCTGCATAGGTCCAGCCAGGAGGTAAAGACCCTGATTCCCTGCATTCAATTAAAACGCTACAAATATGAAGCGGGGGAGATGGGCACTGCTCATGGGGGGCGTCGGAGGCGAGGCAGTGCGGCCAGGGGCTCCCCAACCACTCAGGGCTCAGATAGCGGGCAGGAGAGCAGGTCAGAGGTCAACAAGGCGGCATACAGGCTGAATTCAGATGGGCGTTTCGTCTGTCCGCTCTGTGAGAAGACCTTTAAAACGGCCAACATTCTGAGAGCACACTTGACCACTCACAGTGAAAAGAAGAGCTTCCTGTGCAAGCTGTGTGGGAACGCCTTCCGGACCAAGGGCTCGCTGATTCGACACAACCGGCGACACACAGACGAGCGTCCCTACAGATGTAACCTCTGCGGCCTCTGCTTCAGGGAGTCGGGGGCGCTGACCCGGCATCTGAAGTCCATCACCCCCTGCACGGAGAAGATCCGCTTCAGCCAGTGCAAAGAGATCCTGGTCAATAAGGACGGCGTGCAGAAAGGTGAGTGTCCGGCAGTCCTCCGCACACCTGGGTCTGAGAGCCCCCCCAGGACTTTCTCCTCATCCCCTTTCccattatattttgcatatgttTTAGAAACAAGAAATAGTGCAGCCCCAAAGCTGCCGACAGCCCTCTCACCCCCTGGCACGCCCACAGAGGCACAGGTGTCCGTGGTGACTGTGGTACCCGGCTCCGAGGAGGACATTCTCCAGGAAGTCCACGTGCAGATGGAGGTGGACAGCTCTGAGGAGATGGAGTCTGCTGCTGAGGAGGAGCACCAGGTCGAAGAGCACACAGAGGGAGACAATCTGATCAGCCAGGCCATCATCAACTCGGGTATTGCACTGGAGGGCGACAGGGAGGAGGACGAAGGCGAGGATGAGGGCAAAGAGCCGGAGCTGCCTCTGCCTGCCCATGACACAGAGAACAGGATTGCGGAGATCCAGGTCCGAGAGGAGTGCGTAGAGGTGGACTCAGAGGACATCACTGAGCCTCTGGAGAGACATGGTGAGGAAAAGGGCCACAAATGTCCTCACTGCAACCGGGTCTTCAAAGCTCCAAACTACCTGCGGATACATGTGAAAGGACACTTGGGGTACAAGCCATTCAGGTGTGTGGTCTGCCAGAAGGACTTCCTCACAGGGTACCTGCTGAAGAAACACATGGAGGCCCATCTGAGCGAGCGGCGCTTCAAGTGCGGGGAGTGCGGAAAGCTGTACAAGACCATTGGCCATGTCCGGGAGCACATGAGAGCGCACTCTGATGACCGGCCCTATCGCTGCAACAAGTGCGACAAGGGCTACAAGACCAAGaACGCTCTGCAGGTGCATCAGCGGACTCACGGGGAGGAGAGGCCGTATGTGTGCCAGTTTTGCTCGCGGGGTTTCCGGGAGAAGGGCTCCCTTGTGCGCCACATCCGCCACCACACTGGAGAGAAGCCATTCAAGTGCTACAAGTGTGACCGGGGCTTTGCCGAGCATGGCACTCTGAACCGGCACCTGCGCGCCAAAGGGGGCTGTTTCGGGGGGCTGAAGGATGGGGAGCAGGCCGAGGAGACGGAGGACCAGGCTTCTGCAGACAGTGTGGCCGCCACCATCATCTCGGAGGACCCCCACGCCGTGCTGGTCGAGTTTTCCTCTGTGGTGGCGGACACACAGGAGTACATCATTGAGGCACCGTCAGAAACAGCTGAGTCGGGAGGAGAAGTAGCACTGATGCAGGATGACAGAAATGAGGTGGGCAGCCACATCATGAAGGTGGTCCAGCAGATTGTGAACCAGTCCCACGCGGGCCACCAGATCATCGTGCAGAACGTTACCATGGATGAGGCCGCCGCGCTCTCCTCCGACTGCGGCGACACGATCACCATTGCGACGCCCGAGAGCCTTACAGAGCAGGTCGCCATGACGCTCGCCTCCGCCATCAGTGACGGCACCATTCTGACCACGGAGGGTGGGCTGGAGACGGGAGATGGCACGGTCACGATGGTAGCGGCCCGGGACATCGAGGTGATGGAGCAGGCGGAAGAGTTTGTCATTACCTCCCCAGAGGAGGTGGAGATCCAGACTGTGATCGTACAGGACTGA

Function

symbol description
e4f1 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cell division and regulation of growth. Predicted to be located in cytoplasm and nucleus. Predicted to be active in nucleoplasm. Is expressed in notochord. Orthologous to human E4F1 (E4F transcription factor 1).

NR:

description
PREDICTED: transcription factor E4F1 isoform X3

GO:

id name namespace
GO:0044238 primary metabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005488 binding molecular_function

KEGG:

id description
K22401 E4F1; transcription factor E4F1 / E3 ubiquitin-protein ligase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018463 True 2340 mRNA 0.58 13 11427683 11436200

Neighbor

gene id symbol gene type direction distance location
AMCG00018456 mlst8 coding upstream 18876 11401958 ~ 11408807 (+)
AMCG00018451 LOC108432196,LOC105891623,LOC100699516 coding upstream 43127 11377899 ~ 11384556 (+)
AMCG00018450 LOC106606699 coding upstream 50288 11371544 ~ 11377395 (+)
AMCG00018452 NA coding upstream 57481 11356959 ~ 11370202 (+)
AMCG00018454 LOC107694825,LOC107757004,LOC101474240,LOC102192248 coding upstream 100915 11318171 ~ 11326768 (+)
AMCG00018465 NA coding downstream 14300 11450500 ~ 11452474 (+)
AMCG00018462 grid2ip,LOC108274076,LOC108432200,LOC106589205 coding downstream 51947 11488147 ~ 11514342 (+)
AMCG00018464 NA coding downstream 79755 11515955 ~ 11526795 (+)
AMCG00018468 NA coding downstream 159721 11595921 ~ 11606352 (+)
AMCG00018467 NA coding downstream 183173 11619373 ~ 11638050 (+)
G116479 NA non-coding upstream 11945 11415481 ~ 11415738 (+)
G116477 NA non-coding upstream 15613 11410805 ~ 11412070 (+)
G116374 NA non-coding upstream 343894 11061569 ~ 11083789 (+)
G116358 NA non-coding upstream 447998 10977022 ~ 10979685 (+)
G116354 NA non-coding upstream 688508 10738286 ~ 10739175 (+)
G116546 NA non-coding downstream 292609 11728809 ~ 11818089 (+)
G116601 NA non-coding downstream 690250 12126450 ~ 12126699 (+)
G116603 NA non-coding downstream 702802 12139002 ~ 12142135 (+)
G116653 NA non-coding downstream 836389 12272589 ~ 12273496 (+)
G116654 NA non-coding downstream 842230 12278430 ~ 12278840 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 171518 11252359 ~ 11256165 (+)
AMCG00018422 NA other upstream 1135422 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 1381160 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 1415010 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 1814765 9606661 ~ 9612918 (+)
G116585 rbbp6,LOC107689611 other downstream 530047 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 1053267 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 1066823 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 1107345 12543545 ~ 12611879 (+)
G116832 NA other downstream 1817143 13253343 ~ 13255794 (+)

Expression


Co-expression Network