AMCG00018470


Basic Information

Item Value
gene id AMCG00018470
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11677762 ~ 11678127 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018470
ATGGTGTGGGATAGAGCAGCCGAGCGCACAGTCTGGCGCTCAGTGTGCCGGTGTGCGGTGCGTTGCGCAGAGGGAAGCGGAGGCTCGCCGTCCACAGCGCAGTGCTGTCACTACAGTGGAGCCGCACAGACGGGCGTAAAGACACGCAGCACAACCCAAACTTCTCCACCGCACACTTCCGCGTTCAAAATGGCTGACCCCGTGCAAGTGAGCAGCGACGGCGAAGCGAGCGAGATCCTCCCGCGGTTCGCCCGGCAAGGTGCCCTGCGGCAGAAGAATGTGCATGAGGTGAAGAACCACAAGTTCATCGCCCGCTTCTTCAAGCAGCCGACCTTCTGCAGCCACTGCACCGACTTCATCTGGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018470 True 366 mRNA 0.62 1 11677762 11678127

Neighbor

gene id symbol gene type direction distance location
AMCG00018467 NA coding upstream 39712 11619373 ~ 11638050 (+)
AMCG00018468 NA coding upstream 71410 11595921 ~ 11606352 (+)
AMCG00018464 NA coding upstream 150967 11515955 ~ 11526795 (+)
AMCG00018462 grid2ip,LOC108274076,LOC108432200,LOC106589205 coding upstream 163420 11488147 ~ 11514342 (+)
AMCG00018465 NA coding upstream 225288 11450500 ~ 11452474 (+)
AMCG00018469 prkcb,LOC107722959,LOC105899995 coding downstream 77707 11755834 ~ 11817048 (+)
AMCG00018471 cacng3b,LOC107710002,LOC107590403,LOC107689612,LOC107719973,LOC107688095 coding downstream 177393 11855520 ~ 11900247 (+)
AMCG00018476 NA coding downstream 278102 11956229 ~ 11966330 (+)
AMCG00018475 NA coding downstream 289762 11967889 ~ 11987054 (+)
AMCG00018478 tnrc6a,LOC107601257 coding downstream 394978 12073105 ~ 12116828 (+)
G116479 NA non-coding upstream 262024 11415481 ~ 11415738 (+)
G116477 NA non-coding upstream 265692 11410805 ~ 11412070 (+)
G116374 NA non-coding upstream 593973 11061569 ~ 11083789 (+)
G116358 NA non-coding upstream 698077 10977022 ~ 10979685 (+)
G116354 NA non-coding upstream 938587 10738286 ~ 10739175 (+)
G116546 NA non-coding downstream 50682 11728809 ~ 11818089 (+)
G116601 NA non-coding downstream 448323 12126450 ~ 12126699 (+)
G116603 NA non-coding downstream 460875 12139002 ~ 12142135 (+)
G116653 NA non-coding downstream 594462 12272589 ~ 12273496 (+)
G116654 NA non-coding downstream 600303 12278430 ~ 12278840 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 421597 11252359 ~ 11256165 (+)
AMCG00018422 NA other upstream 1385501 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 1631239 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 1665089 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 2064844 9606661 ~ 9612918 (+)
G116585 rbbp6,LOC107689611 other downstream 288120 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 811340 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 824896 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 865418 12543545 ~ 12611879 (+)
G116832 NA other downstream 1575216 13253343 ~ 13255794 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000108 prkcba coding NC_007112.7 CM002885.2 9004719 ~ 9064912 (+)
grasscarp (Ctenopharyngodon idella) CI01000300_00695491_00729459 PRKCB, PRKCBA, PRKCBB coding CI01000300 null 695267 ~ 729746 (+)
striped catfish (Pangasianodon hypophthalmus) G368856 NA non-coding NC_047620.1 CM018566.1 701616 ~ 701992 (+)