AMCG00018475


Basic Information

Item Value
gene id AMCG00018475
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11967889 ~ 11987054 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018475
ATGAAAGGCGGCTTGCTTGTGATCGTACCGAACCTTCAAGTGGATCTTCAAAAGCaTTACATGAAGAAACTCGTAGGACCTCCCCCACCCAACTACACGTGCTTCCGCTGTGGAAAGAATGGACACTACATTAAAAACTGCCCAACCAATGGGGCATATGCAATTGGGAAGAAGGAGAAGCCCCCATTCCTCCCGCAGGAGCAGTCTTCGTCATCTGAAGAGGAGGACCCGGTGCCAGACGAGCTGCTCTGTCTGCTCTGTAAGGACCTGATGACGGACGCCGTGGTCATCCCCTGCTGCGGGAACAGTTACTGTGATGATTGTATTAGGACATTTCTCCTGGAGTCAGACGAGCACGTGTGTCCTACCTGCCATCAGTCTGATGTTTCCCCCGATGCCCTGATTGCAAACAAGTTCCTTCGCCAGGCTGTCAATAACTTCAAGAACGAGACTGGCTACACCAAGCGGCTGCGTAAGGGTCAAGCCCAGGTGGCTACTCCGATCATGCCAACCCAGCCAAGGCCGGTGGTGCAGCGCCCGGTTCAGCTGCCGCTCCGCCCACCTGCCTCCAGGCAGCAGGACCCCCTTATGGCCAATGTCGCTCGACCGGTTCCAGctgcctcctctcctcctgtGGTGCCAGCCCCGATACCACCTCCAGTAACCCAGCAGCCTTCAGCCACCACCTCTTCTGCCCCTGCCAGCACTGCTGCCACCCCCTCTCTTCAGGTCAACCAAGTCAGTAGTGGGGCCGTCCCAGCTGAGGTCTCCACCTCCATGCCCTCCCCTCAACCCCTCATGAAGCAGGAAGAGGTGATCGTGCCTAAAGAGCTAGAGAAGGTGGTCGTCACCTCTGCCCCACCATCTCTTATGGCTTCATCGGATGCgtctctgcctcctcctcctctcatgCCTAAAGGATATCACGTGCCTGTGATTGGCCAGCCTCACTCCCTTGGGCACTCCATTCCCACAACAGGACAACCATTGCGATCCAACCCACCCCGACCTGGAGGCAGTAGACCAGTCTGGGATACGCCTCCTGGCAGAGGCAGGCCACACAACGACCGTCCTCCCCGGGTTCCGCCGGTGGCTGCCACTGCAACACTCCCTACGGCAGCCCAGGTGTATGTGCCACCTCCCTTCCCCCCGCCACCCCACGTGATGCCTCAGCCGCCTGGAGTTGCCCCACAGCAGTTCTCAATGCAGTACAACGCCGGGCAGCCACCTCCGGCTGGCTACCCTGTGCCCCCGCCGGTGTACCCCCCAGTTCCTGCGACGGTGCCTGCCACCTGGGTGCCTCCTGGAAACCCGACGGCAATCACCAGCACCATCCCCTCCCTCACACCCACGCCCTTCCTCTCTAAGGAGGAGTTCTACCGGCAGCAGCGCAGACTGAAAGAGGAGGAGAAGTCCAAGCTTGAGGAGTTTACTAATGACTTTGCCAAAGAGCTACTGGAGTACAGAAAGATGCAAAAGGAAAGGAGGCGATCATACTCCAGATCCAAATCTCCATACAGTGGCTCATCCTACAGTGGAAGCTCCTACTCCTACTCCAAATCCCGGTCTCGGTCTCGCTCCTCCCGCTCCTACTCCCGCTCCATGACCCGCACCCGCTCACGCTCGCGGTCCCGGTCGCGCTCGCGCTCCTACTCCCGCTCACCCGTGTACTCCCGCCGCCCGGCCCGGGGCCGCAGTCGCAGCTACCGGTCTAGATCACGCTCCCACGGCTACCACCGGTCCCGCACACGCTCTCCCGCCTACAGGGTTGGGGGAagtggtggaggggggggtgccAGTGGTGGGTACCGGTCCCGCTCCAGATCCCCTGGGGGTTACAGGGGTCACACCCCCAGCAAGAAGCCAGCTCCACCCCCACAGGCTGAAGGAGACCGAAAATACATGGGTCGATACAGAGAGCCCCCTGCCTATGATGCCAAGGCTGTGTATGGCCGTCCTGTGGACCAGAGAGACCCTTTCGAGAGGGATAGATACcgggagtgggagagggagtaCCGTGAGTGGTATGACAAATACTTTAAGAACTACAACAACCCTCCAGGCAACATACCCAGGGTGCGTGCCCCCCAACCCAACCGAGAGCCCTTCACACCAGAACGGTTCGCCCCACCCAGGCCCAGGGACAACTCGCCGTACAGCCGTGGTCGTAGAGAGGAGTACCCCCCTCCTGGTCAGAGTCACGGCCCCCTGCAGAGGGGCCGCAATATGCCCCTTACTTACCAAGAGAAGTTCGCATTTAAAGAAGCGCACAACCTGATTGGTGCCAACGCAGGGCCTGGCAGAGGATGTAGCAAAGAGCCTCGCAAAGCGTCAAAGGAGAAAGAGACCGCTGTCAACTTGGCAGCAGATTCCAAAGGcctgaaacacaaaaaacataggAAGAAGAGGAAAGGTGAGGAGGGGGACCTGTTTTCCCACTCGGAGCCCCTGGAGGGCACCAGGAAGGCTGGGGATGATGGGAAAGAGTCCATTCTGATGCCCCCAAGTCGAGATGACGCCACGCCTGTCAGAGATGAGCCCATGGACAGCTCCTCTCTTTCTTACAAGTCCTCCTCTGACAAGGACAGGAGGGAGAAGGCCAAAGGAAAAAGTGAGAAATTGAAGCGTAAGCCGGAAACTACCACCGTTAAAAAAGAGTCTTCAGTTAAAGTGACTAAATCATCCAGAGAGAAGCCAGCAGAGACCGACCGTGAAAAATCACCCCGTTTGGAGCCTGCAGCCAAAAAGGCTAAGGAGGAATCATCTCAGAAGGCAGAGCCCTCCAAACAGCACACGTCCCAGCGAGATGACAAGGCCCCCCGCAGGCCGGCCCCAAAACCAACCAAACACCATCAGGAGACCAAAGCTGTAAAAGAGGAGGTGAAGCAGAAAAAAGAGTATGTCAAGGAGACTACCAAGCACGACAAGGCCCCTGCCAAGGAGGAGAAGCCCAAGAGAGACACTGAGAAGACTACCAAGCCTGAGGACAAACCCCCCAGCAAGGTCCCGGAGGTCAAGCCCGAGAAGCGGAAAAGGAAAGACGAGAAGAGTGCTGAAAAAGACCAGAGCGCGCTCTCGATAAAGTCCCCCCGGGCGGATGTGGCAGAGGTGGTGAAACAGTCTCCGAGGCCTAAGCCTGAGCCTGAGCCCGAGAAGCAGCCCGAGAAAGAGAAACCCGTCATCAGGCCCCTGATGGAGAAAGAGGAGAAGCCCGCCCCCTCCAGAAAGATCAAAATCAACCGCGAGATGGGGAAGAAGATCGTGAGTGGCGAGGGCGTGGTGCCAGTGGAGGAGCCTGCCGAGCCGGCGGGGAAGGCCAAGCCCGAGAGGGTGAAAACCAAGGTCCGCAGGAAAGTCCAGTCAGCGGATGGAACTGCCTCCCTGTTGGTGGATTACACCAGCACGAGTTCCACCGGTGGCAGCCCCATTAAGAAGCTGGACGAGAAGATCGATATGAAGAAGACGGTTGTGAAGACCCTGGAGGAGTACACCAATGACAGCTCGACCCCCGCGGAGGATGAGATCGTCATGATCCAGGTCCCCCGCTCAAAGTGGGAGAAGGAGGACTACGAATCGGAGGACGAGGAGGCCAAGGCGTCTGCGCCCACTGCAGAGCCGGAGTCTGCTGCTCAAGCCAGCCCTGCTGCTCCTGTTACTGTGAAGGACGTGGCCGTGAAGCCGCCCACCACTGTGAAGCCGGCCGATAAGGACTCGCCACAGCTCGACAAGGCCCCCCAGCCCACTAAAGAGACTGCAATCCCTGAGCCCCAGCCTGAGCACAAACCTGCAAAGACCTCAACCGTGTCtgacaaagaaaaggaaaaggagcgGGATAAGGacaaggagaaagagaaagagagggatcGAGAGAGGGCAAAGGAGAAAGAGCGCAGTGCTTCAGACAGAGAGGCGGTAGAGAAGAGGAAGCCTCCCGCCATCCATCCGGAGAAAGAGAGGATCCCGGAGCGTAGCAGTGAACACGGCAGCGAGAAGAGCACTTCCTCTGCCTCGAACGCCTCTACGAAAGACCGGACTTCCGACAAATCCGACACCGTCGCTCGGAAGCCAGCCAGCAAGGATGGCGGGGTAGTTTCCGACAGAAAGCCGGAGCACCCAGCAACGTCCAGAGACCATTCCGGCACCAAACGCAAGGACGATAAGTCCCGAGACCACTCCAAGAGGAGAGACTCTCCGGGCCTTTCCAAGGACCACGCCCAGCCTCCAAAGAGCCGAGACCGGGATAAAGGAGGGTCTGAGCCCAAGAGGCCAGAGCATAGTCCTGCCAGGGACAAGCGCCCTCACTCTGAGCACAAGAGTGCTTCCGAACCCAAGAGAGCTGCACTGGAGGACCACAGGACCGACCGTCCGTCCACTAAGGACTTGATCCGCCCGGACACGAGAGGCACGAAGGACCGGGGTGAGCACAACACTCACAAGCCGCCCCACAGGCCAGCATCCCCAGATGTTAGGAAAGAGGGCGAGAGGGTGGCAGGCCGAGGGGAGCGCGATCACAACAAGAGCAAGACCCCCCTGGTGCGTTCTACTCGTCTCTCTTCAGACCTGGCCCGGGAGACGGACGAGGCGGCCTTCGTCCCGGACTACAGTGAGAGCGAGAGCGACAGCGATGTCTCGGAGCCCAACAGCAAGGCAGAGCAGCGGGTCAGGGAGAAGGGAGCCGACAGCAGCCCCAGCGCCAGCCACAGCCGCAGCCAGAGCCCCTCCGGCAGCCAGGCGCGCAGCAGCAGTGCCAGCTCGGGTGGCAGCCAGGacagcaagaaaaagaaaaagaataagaagGATAAGAAGAAGCACAAGAAGCAtaagaaacacaagaaacacaagaagcatgcGGCCAATGAGTCTGACTCTGAGATGAAGggacaaaaacacaagcataaGAAAAAGAAGTCCAAAAAGAGCAAGGACAAGGAGAAGGACAAAGAGAAGGATGACCAAAAACCTAAAGTGACTATTTGA

Function

GO: NA

KEGG:

id description
K10624 RBBP6; E3 ubiquitin-protein ligase RBBP6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018475 True 4977 mRNA 0.58 14 11967889 11987054

Neighbor

gene id symbol gene type direction distance location
AMCG00018476 NA coding upstream 1559 11956229 ~ 11966330 (+)
AMCG00018471 cacng3b,LOC107710002,LOC107590403,LOC107689612,LOC107719973,LOC107688095 coding upstream 67642 11855520 ~ 11900247 (+)
AMCG00018469 prkcb,LOC107722959,LOC105899995 coding upstream 150841 11755834 ~ 11817048 (+)
AMCG00018470 NA coding upstream 289762 11677762 ~ 11678127 (+)
AMCG00018467 NA coding upstream 329839 11619373 ~ 11638050 (+)
AMCG00018478 tnrc6a,LOC107601257 coding downstream 86051 12073105 ~ 12116828 (+)
AMCG00018477 dctn5,LOC107579625,LOC107590401,LOC107719975,LOC105899917 coding downstream 164335 12151389 ~ 12163807 (+)
AMCG00018481 NA coding downstream 199636 12186690 ~ 12187328 (+)
AMCG00018482 plk1,LOC102776063 coding downstream 208488 12195542 ~ 12202096 (+)
AMCG00018483 NA coding downstream 247957 12235011 ~ 12270627 (+)
G116546 NA non-coding upstream 149800 11728809 ~ 11818089 (+)
G116479 NA non-coding upstream 552151 11415481 ~ 11415738 (+)
G116477 NA non-coding upstream 555819 11410805 ~ 11412070 (+)
G116374 NA non-coding upstream 884100 11061569 ~ 11083789 (+)
G116358 NA non-coding upstream 988204 10977022 ~ 10979685 (+)
G116601 NA non-coding downstream 139396 12126450 ~ 12126699 (+)
G116603 NA non-coding downstream 151948 12139002 ~ 12142135 (+)
G116653 NA non-coding downstream 285535 12272589 ~ 12273496 (+)
G116654 NA non-coding downstream 291376 12278430 ~ 12278840 (+)
G116667 NA non-coding downstream 300515 12287569 ~ 12319488 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 711724 11252359 ~ 11256165 (+)
AMCG00018422 NA other upstream 1675628 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 1921366 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 1955216 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 2354971 9606661 ~ 9612918 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 502413 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 515969 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 556491 12543545 ~ 12611879 (+)
G116832 NA other downstream 1266289 13253343 ~ 13255794 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other downstream 1320844 13307898 ~ 13346877 (+)

Expression


Co-expression Network