AMCG00018483


Basic Information

Item Value
gene id AMCG00018483
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12235011 ~ 12270627 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018483
GCCTGACCCGGATGTAGATGCGTAGAGAGGTTTTGCGCGAAATGCGAGTTTGTCCGTTTTCTGAGTTATAGACGGAGAAGCACGAATCAATCAAACAATTTCTATATAAAGGAAGTGTTATGATATTTTTGAGTTAAACCTACGGACAAGCCTTGTAAGAGGTTCAGTCGGTTTGAAAATGGACGAATACGATGAGATGTACGGCATCGAGGATGACTTTGAGCAGCAGTTTGCAGACGAGCTGGAAGCCTTGGCTGAAATAGACCACAAGTCCCCCATCCGAAAGAAGGAGTCAACCTTCAGGACGAAGCCACAGTCGTTCGAGGAGGCAATTGCCGCTGGAGATGTACTTCCCAAGAGCCAGTCTGCTGTGCAAGCCAGTGCCGCCTCGCCCGCTCTTTCCCCTGCTGCTCCCAGGGCTGCTCGGTCCCAGCCAGCAGGGCCACTGCCTCCCCCTCCCGCCTCAGAGGAGAACTGGTTCCCTGAACATCTGCTGGACAGTGGAGAAGCCCAGAcCCCCAAGCCCAAGCGGAGGAGGCACGATGCGGTGAAGAAGTTGACATTTGGGTTGGCAGATGGGGAGGATGACAtcacccctccctcctcccccgAGGATTACTGCAAGCCACAGCTGCAGCCCCACAATGCTCTGGATGTCAGCGGGCTGGCGGAGCTACAGGAGTCTCCCCGCAGAGACGCAGCCAGGCGGCAAGTCCTGCGCCGCCCCCCCCCGGCTGGAGATTACATCAGCATTACAGACTCCTCCGGGAATAGAGTGTACCTGGCCATGAAGGCCGAGGAGAGCGGGCGCCATCTCCAGGTTGTGGAGGAGTCACAGAGACTGACTGAACTGCTTAACAGCCGTATCGACCAGGCTTTCGGGGAGGTGGATGGCAAGGAGACGGAGGAGAGaattgaggaggaggagggagaagggggTGAAGAGCACCAGGAATCAAGTGTCTCTCGGCTCTGGGTGGATAAGTTCTCCCCCCGGCACTTCACGGAGCTGCTCAGTGATGATTTCACAAACAGGTGCCTGCTGAAGTGGCTGAAGCTGTGGGACAAGGTGGTGTTCGGCAGGGAGAAGCCAGTTAAAAAGGCCATTGTGGCAGCAGTTGACAGCAGGCAGTCCCTCTGGCAGCAGAAGGAACAGCAGCAGAACCAGCGCTTCAAGACCAAAACCCAGATCACTGAGGAGATCCTCGAGGCCGAGCTGGACCAGTACAACCGGCCCAAGTACAAGGTGGCGCTGCTGTGCGGGCCGCCGGGTTTGGGCAAGACCACGCTGGCACACATCATTGCAAGGCATGCTGGGTACAATGTGGTGGAAATGAACGCCAGCGATGACCGCAGCGTAGAGCTCTTCCAGAAACGCATTGACACGGCCACGCAGATGAAGTCTGTCCTGGGTGTCGATGAGAAGCCCAACTGCCTGGTGATCGATGAGATCGACGGAGCGCCCACTGCCGCGATCAACGTCCTCCTGGCTACCCTGAACCGCAAGGACACCCGGCAGGAGGATGCGGGCAGCGGGGCAGCGGCCAGCActttgaaaaagaagaagaagaaagagtcCGTGCTGCAGAGACCTATCATCTGCATTTGCAATGACCTGTACGTTCCTGCGTTGCGGCAGTTGCGGCAGCAGGCCTTCATACTGACCTTTCCTCAGACGCAACCCTCCCGCCTGGTTCAGAGGCTCTCCGAGATCTCCAGGAGGCAGGGGATGAAGGCCGACACGGGGGCTCTCATGGCACTGTGCGAGAAGACCGACAATGACATCCGCTCCTGTATCAACACACTGCAGTTCCTGCACGGCCGTGGGCGGAAGCAGGTGGACCAACGGATGGTGCAGTCCATGTCGATCGGGCTGAAGGACCAGAATAAGGGGCTGTTCTCTGTGTGGCAGGAGATCTTCCAGCTGCCCAGAGTCAAGAGGAAGCGGGTTGGGCAGGAGCTGTCTCTGGGCTTGGAGGAGGGGCACCTGCAGGGAGCAGGGGACTCTGTTGGGGGCAGCGTCAACGCACAGAGACTGCAGCACATCCTCCACCTGGCCTCCTCCACTGGGGAATACGAAAAACTCACACAGgggcTGTATGAGAACTTCCTCAGTATGAAGCTGAAAGACCCCAGTCTGCAGGGTGTGTGTAGGGGCCTGGATTGGCTGGGCTTCACAGACATGCTTAGCGAGACAGTGTTCCGTGGCCAGAACTTCTCCCTCTTGAGATACCTGCCCTTCCTGCCCGCCGCCTTCCACATGTTCTTCGCGGCCAACAACGCCCAATCCCGTAAGCAGCAGACTGAGAATGTTTTGATTGCCATGCTGGCCGAGGTCCACCCGTCTGTCCGCAGCCGTTCCTGCCTGCACACCCTCTCCCTGGACATCCTCAGCCTGCTGCTGGACATCATCTGCCCCAGACTGCGGCCGGTGAACCCCCAGCTGTACAGCACTCGGGAGAAGCAGCAGCTGGTGGAGCTGATTGACACCATGCTGACCTACAACCTCACCTACAGGCAGGACCGCACCCCTGAGGGGCAGTACCTCTACGTATTGGAGCCGAATGTGGAGGGGGTGAAGCAGACGAAGGAGATGGAGCCACCCAAAAGTGCAGCGCCCAAAAGTGCAGCGCCCAAACCAGAAATGAGGAACCATCAGCAGAGACTGGAGAACATTGTGAAGCAGGCCGCAGTGGAGACCAGGCCCGAGCTGGATTTCTTTGGACGCACCGTTACCACTAAAGGGAAGATGGTGTCAGCAACCACTTCTGCAGACCCGGCAAAGGCTGCCGTGGAGCCCCAGATTGGGAAGGCGGTGGGCAGCAGCGATGTCTGGTTCCGCTTCAACGAGGGTGTCTCCAATGCTGTCCGGCGCAACATTTACATCAAGGACCTGCTAACATTATGCTTCGTTTTCAAGTATCAAAATTGGAATGCACTGCTGGACAGAGAGAAGACCTTGTTAACCCTTGACTCTTCAGAAGGAGCTGAAAGTCCTAATCTTTTCCTAGTATTG

Function

GO: NA

KEGG:

id description
K11269 CTF18, CHL12; chromosome transmission fidelity protein 18

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018483 True 3016 mRNA 0.57 22 12235011 12270627

Neighbor

gene id symbol gene type direction distance location
AMCG00018482 plk1,LOC102776063 coding upstream 32915 12195542 ~ 12202096 (+)
AMCG00018481 NA coding upstream 47683 12186690 ~ 12187328 (+)
AMCG00018477 dctn5,LOC107579625,LOC107590401,LOC107719975,LOC105899917 coding upstream 71204 12151389 ~ 12163807 (+)
AMCG00018478 tnrc6a,LOC107601257 coding upstream 118183 12073105 ~ 12116828 (+)
AMCG00018475 NA coding upstream 247957 11967889 ~ 11987054 (+)
AMCG00018487 traf7,LOC107719978,LOC107601260,LOC107590399 coding downstream 23350 12293977 ~ 12312814 (+)
AMCG00018492 NA coding downstream 259931 12530558 ~ 12539267 (+)
AMCG00018497 epn2,LOC107738009,LOC104959799 coding downstream 348733 12619360 ~ 12648880 (+)
AMCG00018500 NA coding downstream 443480 12714107 ~ 12738068 (+)
AMCG00018501 LOC107376712,LOC106516530,LOC103393184,LOC108242978 coding downstream 514064 12784691 ~ 12819143 (+)
G116603 NA non-coding upstream 92876 12139002 ~ 12142135 (+)
G116601 NA non-coding upstream 108312 12126450 ~ 12126699 (+)
G116546 NA non-coding upstream 416922 11728809 ~ 11818089 (+)
G116479 NA non-coding upstream 819273 11415481 ~ 11415738 (+)
G116477 NA non-coding upstream 822941 11410805 ~ 11412070 (+)
G116653 NA non-coding downstream 1962 12272589 ~ 12273496 (+)
G116654 NA non-coding downstream 7803 12278430 ~ 12278840 (+)
G116667 NA non-coding downstream 16942 12287569 ~ 12319488 (+)
G116725 NA non-coding downstream 429874 12700501 ~ 12700765 (+)
G116728 NA non-coding downstream 608959 12879586 ~ 12883914 (+)
G116585 rbbp6,LOC107689611 other upstream 264233 11966247 ~ 11970778 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 978846 11252359 ~ 11256165 (+)
AMCG00018422 NA other upstream 1942750 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 2188488 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 2222338 10004273 ~ 10012673 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 218840 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 232396 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 272918 12543545 ~ 12611879 (+)
G116832 NA other downstream 982716 13253343 ~ 13255794 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other downstream 1037271 13307898 ~ 13346877 (+)

Expression


Co-expression Network