AMCG00018490


Basic Information

Item Value
gene id AMCG00018490
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12287568 ~ 12290544 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018490
ATGGCCCACAACACTCGACCGGCTTTACGGTACAGACCCGACTCCTGCGAAAAGACGTCTGAGTATATTAGAATCAGCTCGCTGATGAGATTTGTACCTGGAGGTGAAGACGGACCGAATGGCCGGGTCAGTTTGCGGACCGAGGTGAGACCCGGGGCCCGTGTGCGGGGCGGCGATGTGAACACTGCGGGGAGCCTGTGatgattttcaaaaatattttctgacaCCTCGTATGAGTGCTGCTGCGGCAGTACTTGATTACAGCTTTAATCTGAGGCTCCTCTGCATTTCTGACGTGAATCCGAGaggagatgtgtgtgtttgttttaagcaTAGTATCAGTTTCAGGTAGGATATTGACCAAACAAATGTTCGCAATTCATCCAAGAGCACTAAACTATTACTATTTAAAGACCAACCCTATTGCCTTTAAGTAGTTTGATTTTAACCTATGATTGAGTACTGGTTTGCATAACATGCGTGCAATTGGCAAGTTTTGCTTTGATCTAGACCAAGGCTTTACATCCGTCTTGCTCAAAAGTTTTGTTCAACCACCCTTTCCCatccttattttaaattaggcCATGTGGCATAACAAAAGACATGCTATGGAGTACAACAGTGCTGGAGTAACAAGCATGTAGAGCAGTGTAATGGAGCGCCTGATGAATCTAACTTGAACGTCCATACTGTGCAGTAATGCAGTGCCTGGGTGTGGATTGAATAGATCTGGGGAGGTGCTAGAAGTGGGTTAAGTAGTGGGGGTCTGATGTTGCAGGGACTTAATGGGGACAAAGTGGGGATGTGCAGCTAGATAAGGCAAACTGGGTCCTATGGCCATGTGGTACAAATGGATTCAGTTAATTGGTTGACCCTAAACATTCTCCATGTGCACCGCAGTAATCTTGTGTGGTTTCTGTATTTTGCAGGTGACTGGGGTACGGCAAAATAACTGGACTGGCTGGCATTGGAAGACTACAATGGCTGATGCAGTCTTGATTTGTGGCATCGAGTCCTGCAGTAGGACTCGCAATCTGCTGACAGCCTAGTACTGTAAACCACTTGCTGGGGAAAATGTGTTGTTGAAGACTATCGGTTTATATTCAAATCCATGGTGGCTGGTGACTTAAGTTCCAGATTGGCAAAAAGCGAGGAAAATTTACTAATTGTACCCATTCAGTTTACTAATTTCTTGGATGGAGCACTATAAATACCCAAACTAAATATCACCATTCATTTAACTAAAGGGATTTTGTGGCAATAAGCAAATCTACATTATAAAGGGAAATCGTGCCTACCTTACTTGTAGTGACGgtcttggtgtgtgtgtttttttttttttttatgtaaactgCCATAACATTCAGGGAAACCTCATTCCTTAGTGGTGTGCTCCTGTGATGAGCTGTGCACAGTGTCACTGACTTTCTATTTGGTGACCATCACTCATTCAAACTGATTTTTCTGTTGACTGAAGCAAACCTGACCAGCAGTGATTCAATCTGTCAAGTGCTCTATGGTGACCATGTGAAGGGTactttactaaataaaaatgtatttgaagacAA
>TU146137
CTCTTTCCCTGTCACAAGTCATGGAGTTGCTGGAAAAGCCCGATCCCACACTTACACCGTGGCCCGGCGGACAGACCCCAGCGGCCCGGGAGGCAGGGGAGCCCGCAGGCGCTTGAGGGAGCATGTCGGAGGATCAGCTCGCTGATGAGATTTGTACCTGGAGGTGAAGACGGACCGAATGGCCGGGTCAGTTTGCGGACCGAGGTGACTGGGGTACGGCAAAATAACTGGACTGGCTGGCATTGGAAGACTACAATGGCTGATGCAGTCTTGATTTGTGGCATCGAGTCCTGCAGTAGGACTCGCAATCTGCTGACAGCCTAGTACTGTAAACCACTTGCTGGGGAAAATGTGTTGTTGAAGACTATCGGTTTATATTCAAATCCATGGTGGCTGGTGACTTAAGTTCCAGATTGGCAAAAAGCGAGGAAAATTTACTAATTGTACCCATTCAGTTTACTAATTTCTTGGATGGAGCACTATAAATACCCAAACTAAATATCACCATTCATTTAACTAAAGGGATTTTGTGGCAATAAGCAAATCTACATTATAAAGGGAAATCGTGCCTACCTTACTTGTAGTGACGgtcttggtgtgtgtgtttttttttttttttatgtaaactgCCATAACATTCAGGGAAACCTCATTCCTTAGTGGTGTGCTCCTGTGATGAGCTGTGCACAGTGTCACTGACTTTCTATTTGGTGACCATCACTCATTCAAACTGATTTTTCTGTTGACTGAAGCAAACCTGACCAGCAGTGATTCAATCTGTCAAGTGCTCTATGGTGACCATGTGAAGGGTactttactaaataaaaatgtatttgaagacAAG
>TU146138
CTCTTTCCCTGTCACAAGTCATGGAGGTAGGttggaaaaataatttgaggTTACGGTTTACGTTATACCAAACTagcattgttttagtttattcGTTCATGAAATTACATGTAACGACACGATCTACTTGTAAGAAAATGTAGGAGgggaaataaaagcagaactaaaatattagttttagaaaatgtaatatctcATTAACCTGTCTTTATGATGCAATACTTCAGGTGTGTATTAagtctattttttgtttttatcgtTTTTTTCTGATACGGCAgcttctgtatgtttttaatggacCACGTGTCGACGTAGCTACGCTGGCACGTCTAGTCCCGCTAAACTAAACGATCAATGCTTAGATGTTGTAATAACGAAACGTATATCTTGCAGTTGCTGGAAAAGCCCGATCCCACACTTACACCGTGGCCCGGCGGACAGACCCCAGCGGCCCGGGAGGCAGGGGAGCCCGCAGGCGCTTGAGGGAGCATGTCGGAGGGTATGTGGGCCTCTATTTTTGATCGGTCTGGTCTTTTGTACAGTGCTCATGCCCGCCTCTCTCCGCAGTGTTGATGATGAGTCCATATTTATTTCTGACACCTCGTATGAACACGCTGCTTTGCGGCCGTTGATTTCACTGTGTGTGGCTGAGACCCTACGGAGGAAGGCCCGGATGAGACCACTGTCTGACCCGGATTTAAAAGCTCGGAGTGCAAGATCATGACCCCAACAAAACGATTCATTTGCAGAGATCAGCTCGCTGATGAGATTTGTACCTGGAGGTGAAGACGGACCGAATGGCCGGGTCAGTTTGCGGACCGAGGTGACTGGGGTACGGCAAAATAACTGGACTGGCTGGCATTGGAAGACTACAATGGCTGATGCAGTCTTGATTTGTGGCATCGAGTCCTGCAGTAGGACTCGCAATCTGCTGACAGCCTAGTACTGTAAACCACTTGCTGGGGAAAATGTGTTGTTGAAGACTATCGGTTTATATTCAAATCCATGGTGGCTGGTGACTTAAGTTCCAGATTGGCAAAAAGCGAGGAAAATTTACTAATTGTACCCATTCAGTTTACTAATTTCTTGGATGGAGCACTATAAATACCCAAACTAAATATCACCATTCATTTAACTAAAGGGATTTTGTGGCAATAAGCAAATCTACATTATAAAGGGAAATCGTGCCTACCTTACTTGTAGTGACGgtcttggtgtgtgtgtttttttttttttttatgtaaactgCCATAACATTCAGGGAAACCTCATTCCTTAGTGGTGTGCTCCTGTGATGAGCTGTGCACAGTGTCACTGACTTTCTATTTGGTGACCATCACTCATTCAAACTGATTTTTCTGTTGACTGAAGCAAACCTGACCAGCAGTGATTCAATCTGTCAAGTGCTCTATGGTGACCATGTGAAGGGTactttactaaataaaaatgtatttgaagacAAG
>TU146140
CTCTTTCCCTGTCACAAGTCATGGAGATCAGCTCGCTGATGAGATTTGTACCTGGAGGTGAAGACGGACCGAATGGCCGGGTCAGTTTGCGGACCGAGGTGACTGGGGTACGGCAAAATAACTGGACTGGCTGGCATTGGAAGACTACAATGGCTGATGCAGTCTTGATTTGTGGCATCGAGTCCTGCAGTAGGACTCGCAATCTGCTGACAGCCTAGTACTGTAAACCACTTGCTGGGGAAAATGTGTTGTTGAAGACTATCGGTTTATATTCAAATCCATGGTGGCTGGTGACTTAAGTTCCAGATTGGCAAAAAGCGAGGAAAATTTACTAATTGTACCCATTCAGTTTACTAATTTCTTGGATGGAGCACTATAAATACCCAAACTAAATATCACCATTCATTTAACTAAAGGGATTTTGTGGCAATAAGCAAATCTACATTATAAAGGGAAATCGTGCCTACCTTACTTGTAGTGACGgtcttggtgtgtgtgtttttttttttttttatgtaaactgCCATAACATTCAGGGAAACCTCATTCCTTAGTGGTGTGCTCCTGTGATGAGCTGTGCACAGTGTCACTGACTTTCTATTTGGTGACCATCACTCATTCAAACTGATTTTTCTGTTGACTGAAGCAAACCTGACCAGCAGTGATTCAATCTGTCAAGTGCTCTATGGTGACCATGTGAAGGGTactttactaaataaaaatgtatttgaagacAAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0005840 ribosome cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018490 True 1568 mRNA 0.43 2 12287569 12290544
TU146137 False 844 lncRNA 0.46 4 12287568 12289928
TU146138 False 1463 lncRNA 0.43 3 12287568 12289928
TU146140 False 738 lncRNA 0.42 3 12287568 12289928

Neighbor

gene id symbol gene type direction distance location
AMCG00018485 NA coding downstream 14106 12271996 ~ 12273462 (-)
AMCG00018484 LOC103399497 coding downstream 52667 12223651 ~ 12234901 (-)
AMCG00018486 NA coding downstream 64800 12203200 ~ 12222768 (-)
AMCG00018479 NA coding downstream 140244 12138773 ~ 12147324 (-)
AMCG00018480 NA coding downstream 152465 12122873 ~ 12135103 (-)
AMCG00018488 caskin1,LOC107721515 coding upstream 28862 12319406 ~ 12350065 (-)
AMCG00018489 LOC105030342,LOC107721515,LOC107654476 coding upstream 72752 12363296 ~ 12371524 (-)
AMCG00018494 NA coding upstream 228785 12519329 ~ 12530668 (-)
AMCG00018495 NA coding upstream 254396 12544940 ~ 12553398 (-)
AMCG00018496 NA coding upstream 280344 12570888 ~ 12574512 (-)
G116619 NA non-coding downstream 166961 12119808 ~ 12120607 (-)
G116610 NA non-coding downstream 168758 12093469 ~ 12118810 (-)
G116529 NA non-coding downstream 677998 11608137 ~ 11609570 (-)
G116511 NA non-coding downstream 755498 11531798 ~ 11532070 (-)
G116501 NA non-coding downstream 773075 11511463 ~ 11514493 (-)
G116672 NA non-coding upstream 4917 12295461 ~ 12298711 (-)
G116749 NA non-coding upstream 584371 12874915 ~ 12876763 (-)
G116750 NA non-coding upstream 589121 12879665 ~ 12884422 (-)
G116784 NA non-coding upstream 698892 12989436 ~ 13046593 (-)
G116875 slc29a4,LOC108430547,LOC107104199 non-coding upstream 1040347 13330891 ~ 13342748 (-)
G116577 NA other downstream 376232 11911014 ~ 11911336 (-)
G116428 NA other downstream 1084680 11199578 ~ 11202888 (-)
AMCG00018440 NA other downstream 1140628 11088174 ~ 11146940 (-)
AMCG00018437 srebf1,LOC107713935 other downstream 1203788 11061628 ~ 11083780 (-)
AMCG00018431 trrap other downstream 1707463 10562554 ~ 10580105 (-)
AMCG00018522 NA other upstream 962541 13253085 ~ 13257250 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other upstream 1354824 13645368 ~ 13727870 (-)
AMCG00018555 LOC107689851 other upstream 1952001 14242545 ~ 14263154 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other upstream 2212859 14503403 ~ 14520875 (-)
G117377 NA other upstream 2445594 14736138 ~ 14738312 (-)

Expression


Co-expression Network